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Heatmap: Cluster_107 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000558 (MAX1)
 1.66 0.94 1.06 1.02 9.32 12.39 2.16 2.21 2.9 2.33 1.93 1.75 4.05 23.9 15.41 3.8 2.75 4.83 5.87 2.77 1.99 2.86 3.45 4.15 2.96 3.92 2.64 3.65 3.97 2.12 3.35
0.31 0.46 0.33 0.38 1.7 1.6 0.63 0.58 0.93 0.72 0.94 0.68 0.73 3.09 2.77 0.77 0.94 1.77 1.42 0.74 0.84 0.77 0.68 0.7 0.72 0.56 0.86 0.84 1.02 0.59 0.51
Bra002048 (MPT1)
 0.23 0.3 0.2 0.27 1.96 2.92 0.97 0.62 0.58 0.69 0.99 0.99 0.23 6.07 2.77 0.89 0.39 1.45 1.03 0.48 0.77 1.18 1.54 1.78 1.86 1.9 1.99 2.41 2.89 0.61 1.39
7.73 8.08 7.65 8.27 27.92 25.98 10.61 8.11 14.3 13.23 10.41 10.25 10.66 35.07 34.73 18.98 11.46 14.49 16.39 14.52 14.91 13.09 12.37 13.3 13.06 15.37 9.01 12.46 14.87 10.47 12.53
0.37 0.67 0.37 0.58 5.97 2.6 1.06 3.21 1.57 0.97 1.68 1.38 2.27 11.5 4.83 2.57 2.23 0.98 1.89 2.42 2.38 2.47 0.62 1.15 0.71 1.03 0.99 1.23 0.79 0.37 0.43
Bra005005 (PROT1)
 4.2 2.64 2.39 3.35 8.16 9.99 5.04 4.04 6.18 4.75 5.25 4.82 4.84 12.49 10.63 7.65 5.52 3.31 4.69 5.5 5.33 5.42 4.44 3.95 3.78 2.03 3.5 4.67 4.89 3.37 3.73
6.96 7.69 11.28 8.82 18.33 23.99 14.32 11.9 13.85 14.31 17.25 11.67 11.39 37.55 37.24 15.84 15.04 12.61 17.24 18.66 16.44 15.23 14.17 17.16 15.03 11.13 12.86 12.96 15.86 9.96 8.37
Bra005762 (AtHMP43)
 1.97 3.69 6.75 16.53 3.4 4.55 2.67 1.8 1.77 1.58 1.41 1.85 2.89 30.55 18.79 3.6 1.43 4.53 2.15 1.81 1.05 1.69 10.23 1.58 2.44 3.68 1.68 1.92 1.66 1.43 0.75
0.0 0.16 0.0 0.0 7.19 12.52 0.13 0.02 0.74 0.6 0.27 0.78 1.19 36.38 25.41 1.15 1.6 8.37 1.71 0.95 0.19 0.79 7.31 0.66 0.38 0.31 0.15 0.65 0.28 0.0 0.02
5.13 6.44 5.49 3.3 9.23 14.52 5.93 6.53 11.51 10.96 7.95 8.54 9.07 22.11 23.36 10.4 6.62 11.47 8.88 9.52 7.53 10.13 10.82 6.8 6.58 5.19 5.72 6.75 9.56 6.34 6.45
2.84 0.85 0.81 0.26 84.35 136.03 5.25 4.25 10.16 5.17 5.54 3.11 4.44 432.64 185.34 18.8 13.27 53.14 32.57 8.25 15.28 4.22 19.29 30.48 21.32 10.62 12.02 52.29 45.03 4.55 8.28
Bra009001 (CAF1i)
 38.31 44.71 43.47 33.89 72.96 69.79 38.21 38.4 52.48 43.14 48.1 40.56 43.21 103.73 84.49 48.83 44.77 47.84 55.44 54.7 43.95 47.27 46.09 47.85 46.02 33.0 43.48 41.85 48.53 34.61 38.24
Bra009200 (NF-YA10)
 0.47 0.0 0.17 0.06 24.3 25.46 2.28 1.8 7.41 3.72 2.29 1.37 1.8 58.23 36.28 6.83 5.52 4.3 10.1 5.5 4.59 2.86 1.16 2.52 2.36 2.1 1.08 4.67 4.97 0.67 0.61
12.28 11.42 16.11 11.18 29.3 39.19 25.83 18.9 26.82 23.1 24.48 21.17 18.13 53.0 50.21 27.75 22.8 18.87 25.54 33.58 34.17 29.44 15.94 27.85 29.07 15.53 24.59 23.06 23.68 16.49 15.56
Bra011408 (ROXY21)
 4.73 0.78 0.94 1.38 211.39 249.54 30.59 7.78 78.47 27.93 50.77 24.01 24.97 380.63 312.46 77.98 35.43 91.51 63.89 48.79 63.78 35.49 117.65 83.58 64.6 14.16 44.39 114.49 140.85 21.23 17.47
Bra011567 (A/N-InvB)
 0.13 0.06 0.05 0.03 0.61 0.58 0.09 0.03 0.26 0.12 0.14 0.24 0.43 3.74 1.37 0.32 0.09 0.53 0.3 0.26 0.15 0.14 0.56 0.16 0.23 0.15 0.21 0.15 0.23 0.12 0.34
Bra012725 (KINbeta2)
 9.1 10.67 10.64 9.06 22.83 23.45 11.9 10.25 15.37 15.82 16.33 15.79 17.09 27.23 27.85 16.95 15.49 14.92 16.67 15.41 14.5 15.94 12.29 16.82 17.0 10.01 15.64 13.42 14.37 13.81 15.14
0.0 0.0 0.0 0.0 0.67 0.03 0.0 0.05 0.0 0.0 0.06 0.0 0.23 2.33 0.77 0.1 0.06 0.23 0.25 0.09 0.08 0.03 0.23 0.08 0.25 0.13 0.03 0.22 0.0 0.03 0.21
1.23 0.7 1.01 1.65 5.15 4.04 2.12 2.48 3.67 2.08 2.97 2.15 3.94 8.28 6.28 2.58 2.65 1.61 2.59 1.72 2.18 1.98 0.83 2.28 2.27 2.43 2.35 3.15 3.54 1.61 1.65
0.58 0.55 0.72 0.37 1.71 1.63 0.36 0.18 0.96 0.91 1.36 0.64 0.37 3.18 2.53 1.19 0.76 0.85 1.21 1.37 1.26 0.68 0.63 0.71 0.52 0.46 0.65 0.8 0.64 0.49 0.4
2.56 2.71 2.05 1.67 5.52 5.77 2.87 2.67 3.5 3.03 2.99 2.95 2.7 7.15 6.74 3.92 3.26 2.63 3.38 3.66 3.63 3.44 2.94 2.34 2.39 1.42 2.36 2.66 2.95 2.23 1.99
Bra020568 (NRG1A)
 0.12 0.04 0.09 0.06 1.16 1.2 0.34 0.31 0.59 0.53 0.45 0.5 0.37 2.45 2.2 0.68 0.43 1.1 0.7 0.51 0.54 0.51 1.13 0.86 0.71 0.46 0.53 0.7 0.95 0.49 0.58
0.38 0.01 0.06 0.15 0.62 0.83 0.13 0.17 0.14 0.07 0.24 0.3 0.33 1.47 0.65 0.3 0.1 0.39 0.15 0.38 0.11 0.29 0.2 0.19 0.18 0.09 0.06 0.1 0.23 0.05 0.27
0.0 0.0 0.0 0.0 5.69 8.22 0.05 0.03 0.36 0.32 0.21 0.49 0.63 21.81 12.52 0.37 1.11 5.87 1.45 0.51 0.06 0.61 4.89 0.44 0.15 0.19 0.06 1.14 0.43 0.15 0.03
0.0 0.0 0.0 0.0 0.49 0.84 0.0 0.0 0.17 0.0 0.08 0.0 0.1 7.12 2.88 0.09 0.26 0.83 0.42 0.25 0.0 0.0 0.25 0.15 0.0 0.0 0.0 0.25 0.15 0.0 0.0
Bra022654 (EAL)
 4.51 4.34 1.88 2.6 23.81 21.49 9.01 5.76 13.59 13.96 8.61 7.72 9.77 38.34 38.57 15.07 16.05 9.37 13.75 11.86 12.33 10.81 6.52 11.12 10.81 8.39 9.75 9.27 11.03 7.4 10.64
Bra023030 (PAM18-1)
 63.52 68.23 75.41 60.28 130.71 131.08 64.14 54.15 94.47 82.8 81.74 84.41 86.84 164.0 164.6 94.55 91.23 94.45 97.44 100.78 90.27 99.88 70.59 97.47 78.03 55.05 88.11 64.67 81.42 68.33 78.79
Bra025018 (SSP4)
 9.55 9.69 8.72 6.93 18.14 28.33 11.27 8.6 15.74 13.37 15.18 13.85 9.33 47.53 39.81 15.47 14.14 15.33 16.24 14.35 12.28 15.0 19.41 10.56 9.71 9.97 9.57 10.41 13.6 10.24 10.46
Bra025910 (BEE1)
 4.23 5.64 1.95 1.61 16.96 28.41 8.47 3.76 7.95 4.07 5.47 4.99 7.6 43.09 35.63 11.44 8.95 18.92 14.79 10.35 9.84 6.49 14.44 11.35 10.22 5.82 6.47 18.96 13.22 5.76 5.22
0.0 0.0 0.0 1.05 2.76 3.92 0.42 0.78 0.95 0.6 0.41 0.51 1.46 13.55 7.44 2.84 2.49 3.5 0.89 0.36 2.45 1.12 0.0 0.0 0.0 0.0 0.0 0.18 0.0 0.0 0.0
Bra026749 (NRB4)
 3.97 3.69 4.27 4.19 6.82 7.38 4.72 4.17 5.71 4.77 5.65 5.11 4.43 7.55 8.3 5.83 4.9 4.46 4.2 5.13 5.08 5.14 4.65 4.29 4.71 4.68 4.37 4.64 5.18 3.83 4.32
Bra028369 (MYB305)
 0.02 0.14 0.0 0.0 0.48 0.4 0.01 0.07 0.06 0.1 0.01 0.0 0.05 1.22 0.98 0.06 0.09 0.11 0.02 0.0 0.01 0.07 0.0 0.08 0.0 0.0 0.01 0.02 0.0 0.0 0.0
4.69 4.94 4.31 4.44 6.63 6.16 3.63 4.03 4.97 5.18 6.16 4.23 6.22 12.03 9.57 4.48 5.15 6.23 5.33 5.5 5.17 5.63 5.16 5.4 4.77 5.87 4.72 4.68 4.87 4.77 4.29
Bra031056 (BTSL2)
 0.55 1.13 1.0 0.44 1.84 2.81 0.67 0.62 1.75 1.03 0.91 1.26 1.22 6.88 4.13 1.01 1.23 1.5 1.39 1.55 1.32 1.47 1.53 1.41 1.15 1.2 1.65 1.17 1.86 1.32 1.88
Bra031473 (GEM1)
 16.2 15.94 24.37 13.93 40.59 32.34 12.78 16.28 26.35 22.0 25.61 23.99 19.58 45.56 43.59 25.05 23.94 26.83 28.68 28.74 24.55 23.93 14.36 24.74 20.97 18.09 19.67 20.91 25.7 21.31 19.61
0.06 0.03 0.02 0.01 0.25 0.23 0.06 0.02 0.06 0.08 0.1 0.07 0.05 1.05 0.42 0.08 0.1 0.18 0.13 0.11 0.07 0.08 0.29 0.12 0.08 0.06 0.04 0.17 0.12 0.14 0.08
2.93 2.52 3.29 2.41 6.38 4.87 1.68 1.36 3.36 2.61 3.35 2.57 2.23 6.88 5.84 3.16 2.66 3.76 2.96 3.12 2.64 2.64 2.06 2.43 2.49 1.76 2.34 2.54 3.11 2.39 2.5
Bra031663 (GolS3)
 0.45 0.23 0.2 0.15 10.69 9.18 1.82 2.21 4.92 1.73 2.15 2.39 3.17 96.63 26.63 3.01 1.57 26.86 6.04 2.71 3.17 2.61 27.43 2.89 2.08 1.09 1.39 6.11 6.25 1.54 1.53
Bra032147 (SAW1)
 21.6 15.65 20.55 21.48 43.21 45.81 23.55 24.62 28.64 24.92 22.83 22.71 19.59 73.6 66.91 31.35 30.06 23.05 25.17 28.13 27.38 24.48 10.68 19.53 18.73 19.58 18.57 25.31 27.53 14.33 15.46
Bra032315 (COR413IM2)
 254.38 195.2 203.75 150.31 450.62 743.0 290.54 211.1 567.51 381.3 331.06 245.42 248.12 1340.49 1053.75 285.9 360.93 197.58 428.32 254.91 283.15 284.67 85.28 305.78 272.16 214.89 259.98 346.37 416.56 261.41 290.72
Bra034628 (ELK4)
 2.8 2.5 3.93 3.28 9.02 10.13 4.3 3.91 6.9 5.1 4.78 5.08 4.32 18.16 15.06 6.75 5.91 4.18 6.44 6.91 5.37 4.55 3.86 4.55 4.17 4.06 3.69 5.41 5.29 2.84 2.8
0.0 0.0 0.0 0.0 3.04 2.58 0.01 0.0 0.13 0.0 0.01 0.0 0.01 14.0 6.16 0.1 0.02 1.41 0.54 0.01 0.01 0.08 0.6 0.12 0.04 0.0 0.01 0.16 0.18 0.01 0.1
5.62 5.79 7.16 5.37 8.47 9.42 5.4 6.14 7.85 6.46 7.66 6.77 5.62 13.42 11.41 8.09 7.67 6.1 6.86 7.68 6.49 7.64 6.22 6.08 7.33 6.44 6.94 6.39 6.78 5.57 5.91
Bra036650 (AEP2)
 0.03 0.09 0.07 0.06 0.29 0.23 0.1 0.04 0.14 0.14 0.12 0.13 0.15 1.44 0.57 0.16 0.17 0.8 0.07 0.15 0.08 0.15 1.18 0.17 0.2 0.15 0.08 0.16 0.21 0.15 0.13
Bra037028 (ROXY21)
 0.05 0.54 0.67 0.26 34.95 41.4 3.46 1.21 6.9 4.62 6.52 4.45 8.3 118.1 64.48 8.11 5.64 14.97 12.62 7.72 7.06 3.57 11.29 11.54 10.75 6.65 6.21 16.16 21.43 4.43 6.4
Bra037037 (GATA9)
 0.09 0.0 0.1 0.13 0.91 0.58 0.11 0.18 0.32 0.07 0.25 0.17 0.51 3.55 2.02 0.27 0.11 0.65 0.27 0.08 0.21 0.12 1.54 0.21 0.51 0.19 0.16 0.28 0.93 0.27 0.54
Bra037352 (ADF8)
 2.72 1.44 1.06 1.04 7.45 5.68 2.33 1.86 2.38 2.62 3.59 3.16 2.05 11.98 6.57 2.53 3.73 2.13 2.68 3.51 4.83 2.78 0.32 2.98 1.93 1.87 1.75 3.67 2.3 4.08 1.75
0.41 0.04 0.24 0.14 0.81 1.35 0.19 0.35 0.79 0.26 0.43 0.41 0.47 2.41 2.14 0.36 0.61 1.18 0.86 0.49 0.52 0.89 1.34 0.17 0.43 0.31 0.23 0.58 0.65 0.35 0.41
2.99 2.5 3.31 1.43 7.63 11.45 2.95 4.89 7.44 5.96 6.1 4.5 4.01 20.07 17.26 4.0 4.81 6.06 8.45 5.22 5.16 4.87 10.01 5.41 5.79 3.78 5.44 5.49 7.75 5.67 6.26
Bra039212 (BLH4)
 11.67 9.51 12.03 8.94 26.96 28.89 14.52 15.19 16.27 15.3 13.54 13.96 9.95 36.0 35.05 16.6 20.86 15.82 16.76 17.62 14.16 15.86 7.19 15.29 13.99 12.45 14.2 16.84 17.51 10.89 10.65
2.92 2.77 3.84 2.31 5.8 7.07 2.34 1.45 4.77 3.41 4.17 3.36 2.75 9.11 8.41 3.31 2.9 3.97 3.73 3.3 2.8 3.75 3.39 3.25 2.81 2.15 2.51 3.44 4.45 2.9 3.29
Bra040529 (UNE8)
 1.33 0.58 0.7 0.45 25.03 34.01 7.39 3.33 23.26 13.98 17.24 8.44 7.33 82.26 56.42 20.64 17.61 17.3 24.38 20.58 18.95 10.66 8.66 13.29 11.95 9.6 10.27 16.71 22.72 8.02 10.43
0.0 0.0 0.03 0.0 0.24 0.28 0.01 0.0 0.07 0.05 0.16 0.15 0.16 1.11 0.55 0.11 0.04 0.01 0.14 0.05 0.24 0.07 0.05 0.06 0.05 0.0 0.02 0.03 0.04 0.04 0.07
Bra040594 (DJ1D)
 48.99 41.37 35.77 36.57 49.68 66.45 45.41 43.75 49.28 43.85 42.59 39.19 41.58 89.08 94.51 53.72 49.51 40.41 52.24 41.24 45.63 43.11 28.12 49.02 45.88 48.14 46.63 44.78 52.72 38.63 52.04

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)