Heatmap: Cluster_60 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000539 (SPX2)
0.08 -0.08 -0.36 -0.48 -0.39 0.06 0.14 -0.56 -0.27 -0.35 -0.64 -0.45 -0.99 -0.95 -0.19 0.17 -0.24 2.55 1.61 0.21 -0.43 -0.07 -0.99 -0.68 -0.59 -0.83 -0.83 -0.75 -0.72 -0.73 -0.81
Bra002239 (MED19B)
-0.75 -0.92 -0.74 -0.61 0.32 0.28 -0.61 -0.79 -0.27 -0.65 -0.32 -0.58 -0.44 0.28 0.26 -0.18 -0.22 2.34 1.44 -0.23 -0.45 -0.54 0.2 -0.32 -0.49 -0.7 -0.48 -0.29 -0.32 -0.6 -0.35
-8.79 -6.45 -5.15 -6.05 -4.53 -3.05 -1.04 -0.95 -1.69 -1.02 -1.73 -1.17 -2.5 -3.33 -3.71 -0.07 -0.25 4.04 2.69 0.11 -0.62 -1.38 -6.43 -2.3 -1.56 -4.32 -2.19 -3.97 -4.11 -4.85 -3.43
Bra003426 (TKL1)
-2.14 -1.47 -0.87 -2.19 -2.64 -2.29 -0.3 -0.21 -0.75 -0.04 -0.2 -0.29 0.17 -1.55 -1.39 0.43 0.72 3.09 1.81 -0.58 -0.56 -0.32 -1.7 -1.26 -0.78 0.44 -0.81 -1.42 -1.36 -0.69 -0.41
Bra005694 (SQD2)
-0.21 -1.15 -1.47 -1.17 0.69 -0.16 -0.49 0.12 0.28 -0.48 -0.43 0.03 -1.23 -0.44 -0.37 -0.92 -0.91 2.47 1.58 -0.51 -0.85 -0.61 -2.35 -0.58 -0.69 -0.59 -0.62 0.47 0.43 0.25 -0.5
Bra006022 (DIC3)
-3.07 -3.31 -2.09 -4.28 -1.16 -3.41 -1.47 -1.54 -1.07 -0.75 -1.1 -0.92 -2.59 -3.58 -2.95 -0.68 -1.36 3.62 3.08 0.51 -0.02 -1.22 -0.83 -1.88 -2.59 -1.6 -3.1 -0.76 -3.09 -4.1 -
Bra006543 (SPX1)
-1.39 -2.26 -2.24 -3.14 -1.27 -0.75 -0.33 -0.91 -1.18 -0.96 -1.3 -0.8 -1.39 -2.66 -2.03 -0.77 -0.19 3.2 3.01 -0.04 -0.96 -0.98 -1.67 -1.15 -1.14 -0.95 -1.2 -1.06 -0.97 -0.6 -1.0
-2.95 -3.38 -3.75 -3.59 -1.78 -0.23 -0.28 -0.39 0.04 -0.41 -0.55 -0.44 -0.4 -0.7 -1.05 0.09 -0.17 2.92 2.31 0.42 0.21 -0.07 -2.16 -0.54 -0.5 -1.77 -0.68 -0.79 -0.7 -1.26 -0.39
Bra007210 (UGP3)
-0.11 -0.51 -0.37 -0.49 -0.86 -0.65 -0.02 -0.25 0.09 -0.01 -0.0 0.05 -0.36 -0.86 -0.92 -0.08 0.29 1.93 1.94 -0.0 -0.38 -0.14 -2.79 -0.53 -0.4 -0.53 -0.47 -0.34 -0.08 -0.19 -0.34
Bra007235 (AGAL3)
-1.64 -0.9 -1.78 -1.46 -0.34 -0.01 -0.21 -0.7 -0.17 -0.21 -0.16 -0.13 -0.27 0.16 0.3 0.01 0.14 2.12 1.23 0.1 -0.31 -0.01 0.74 -0.28 -0.32 -0.63 -0.32 -0.62 -0.56 -0.57 0.1
-0.05 -0.3 -0.31 -0.24 -0.3 -0.13 -0.14 -0.36 0.26 0.32 0.13 0.36 -0.65 -0.53 -0.56 -0.05 0.05 1.74 1.65 0.35 0.09 0.29 -2.13 -0.72 -0.69 -1.01 -0.58 -0.55 -0.5 -0.57 -0.78
Bra007963 (CRF8)
-1.57 -1.66 -1.4 -1.59 -0.55 -0.04 -0.34 -0.69 -0.47 -0.53 -0.47 -0.79 -0.64 -0.41 -0.04 -0.47 0.01 2.97 2.22 0.35 -0.52 -0.41 -1.02 -0.93 -0.95 -1.7 -0.85 -0.87 -0.7 -1.1 -0.97
Bra008171 (KJC1)
-0.36 -0.23 -0.53 -0.45 0.1 -0.54 -0.99 -0.89 -0.91 -0.61 -0.61 -0.5 -0.42 -0.44 -0.28 0.03 0.04 2.84 1.86 -0.65 -0.86 -0.38 0.15 -1.2 -0.8 -1.15 -1.07 -0.53 -0.85 -0.64 -0.81
Bra008855 (G6PD2)
-0.55 -2.27 -3.33 -4.76 0.34 -2.61 -3.28 -3.63 -3.61 -2.71 -3.92 -5.37 -1.55 -2.99 -2.8 -1.77 -1.31 4.08 2.61 -1.19 -2.64 -2.56 -1.41 -1.42 -1.49 -1.88 -2.29 -0.27 -1.84 -3.14 -2.6
-1.44 -0.61 -2.13 -2.63 -1.57 -0.84 -0.96 -1.02 -0.3 -1.25 -0.7 -0.79 0.33 -0.61 0.11 0.1 -0.02 2.63 2.28 0.04 -1.17 -0.77 -1.39 -0.19 -0.31 -0.83 -0.5 -1.46 -0.4 -0.48 0.94
Bra009633 (SQD2)
-2.35 -2.83 -3.5 -3.47 -1.45 -1.17 -1.95 -3.28 -1.78 -2.23 -2.02 -1.95 -1.79 -1.75 -1.21 -0.88 -0.77 3.79 2.87 -0.47 -1.88 -1.44 -2.1 -1.11 -1.28 -1.56 -1.36 -1.41 -0.91 -1.35 -0.86
Bra011407 (SQD1)
-1.11 -1.31 -1.04 -0.91 -1.33 -1.46 -0.07 -0.08 -0.88 -0.13 -0.51 -0.22 -0.06 -1.49 -1.27 0.26 0.14 2.43 1.88 0.06 -0.28 -0.36 -0.84 -0.07 -0.08 -0.23 -0.06 -0.09 -0.46 -0.39 0.05
-2.61 -3.54 -3.8 -4.16 -1.86 -1.89 -2.37 -3.36 -2.32 -2.8 -3.19 -2.98 -2.83 -2.9 -2.73 -1.57 -1.86 4.17 3.02 -1.58 -3.11 -2.62 -4.09 -2.55 -2.6 -3.27 -2.72 -2.82 -2.42 -2.19 -2.1
-2.91 -2.33 -3.34 -2.56 -3.0 -2.1 -1.8 -2.09 -0.6 -1.36 -0.73 -0.56 -1.75 -1.62 -1.69 -0.79 -0.85 3.77 2.7 -0.55 -1.18 -0.44 -2.64 -2.11 -1.29 -3.09 -1.32 -1.44 -1.18 -0.91 -1.13
Bra012665 (KUA1)
0.29 -0.21 0.0 0.2 0.14 -0.13 -0.93 -0.31 -0.36 -0.45 -0.46 -0.54 -0.68 -0.02 0.0 -0.7 -0.45 2.26 1.28 -0.81 -0.56 -0.46 -1.07 -0.55 -0.39 0.01 -0.35 -0.01 0.04 -0.22 -0.43
Bra013819 (PGI)
-1.38 -1.89 -2.68 -1.84 -0.99 -0.85 0.27 0.9 -0.63 -0.44 -0.44 -0.42 0.12 -1.09 -0.79 -0.19 -0.05 2.65 1.91 -0.49 -0.84 -0.72 -1.3 -0.38 -0.42 -0.65 -0.26 -0.07 -0.37 -0.33 0.13
Bra014262 (SPP1)
-2.95 -3.01 -3.27 -4.05 -0.03 -2.38 -3.21 -3.87 -1.75 -2.99 -3.14 -3.03 -2.36 -2.2 -2.34 -2.02 -2.82 3.91 3.13 -1.76 -3.01 -2.41 -5.61 -1.45 -1.48 -2.22 -1.26 -0.66 -0.82 -1.14 -2.12
-0.95 -0.95 -1.11 -1.37 -0.35 0.19 0.11 -0.47 -0.34 -0.43 -0.29 -0.54 -0.62 -0.48 -0.31 -0.42 -0.18 2.19 1.82 0.06 -0.6 -0.25 -0.1 -0.01 -0.01 -0.79 0.0 -0.4 0.04 -0.41 -0.19
Bra015928 (GDPD5)
-1.67 -1.09 -0.86 -1.77 -0.29 -0.19 -0.62 -1.16 -0.52 -0.45 -0.66 -0.12 -0.92 -0.99 -0.51 -0.33 0.08 2.62 1.65 -0.14 -0.62 -0.26 -0.19 0.03 -0.12 -0.47 -0.13 -0.42 -0.13 0.1 0.18
Bra016591 (PEPC1)
-1.44 -3.51 -4.32 -5.68 -3.16 -2.55 -1.62 -4.18 -3.74 -3.61 -3.67 -3.81 -4.25 -5.29 -4.53 -2.18 -1.95 4.12 3.39 -0.77 -3.3 -3.4 -5.17 -4.82 -4.43 -5.42 -5.86 -3.67 -4.24 -7.77 -9.05
Bra017108 (PECT1)
-1.39 -1.29 -2.35 -2.41 0.32 0.04 -0.69 -1.57 -0.1 -0.6 -0.69 -0.66 -0.57 -0.14 0.12 -0.05 -0.21 2.8 1.87 -0.47 -0.39 -0.27 -0.05 -0.54 -0.5 -0.83 -0.54 0.02 0.06 -1.53 -1.83
-0.87 -1.22 -4.07 -1.77 -0.54 0.11 -1.41 -2.46 -1.54 -0.54 -3.15 -1.41 -1.34 -1.27 -0.6 -2.1 -2.29 3.87 2.22 -1.5 -2.67 -2.32 -1.68 -1.06 -1.53 -1.51 -1.41 -1.27 -1.21 -1.46 -0.22
Bra018150 (PS3)
-1.08 -1.36 -1.54 -2.18 -1.74 -0.08 -0.27 -1.06 -0.46 -0.29 -0.16 -0.34 -0.92 -1.34 -1.2 0.07 0.07 2.36 1.93 0.47 0.02 -0.0 0.6 -0.04 0.17 -0.59 0.15 -0.27 -0.45 -1.06 -0.87
-8.61 -6.49 -6.96 -9.36 -7.26 -6.63 -2.89 -4.33 -4.21 -3.28 -3.46 -3.02 -3.79 -6.85 -6.61 -3.4 -1.62 4.33 3.14 -1.34 -3.41 -3.31 -4.27 -3.31 -3.87 -4.8 -3.55 -5.97 -6.15 -5.65 -4.92
Bra021274 (PAP17)
-4.37 -5.16 -3.93 -4.77 -3.17 -2.56 -0.64 -0.71 -2.43 -1.55 -2.24 -2.02 -0.66 -6.31 -4.35 -0.32 -0.31 3.94 2.54 -0.0 -0.98 -0.79 -2.36 -0.96 -1.06 -1.88 -1.06 -2.01 -2.34 -2.46 -2.21
-0.46 -0.23 -0.19 -0.05 -0.8 -1.1 -0.25 0.12 -1.22 -0.5 -0.94 -0.51 -0.03 -1.06 -0.83 -0.01 0.0 2.19 1.66 -0.2 -0.16 -0.56 -1.05 0.04 0.14 -0.0 0.17 -0.11 -0.81 -0.56 0.22
-1.28 -1.8 -1.53 -1.97 0.02 -0.05 -0.49 -1.18 -0.83 -0.68 -0.82 -0.62 -0.58 0.14 -0.42 -0.77 -0.05 2.69 2.05 -0.34 -0.69 -0.53 0.01 0.14 -0.18 -0.78 -0.31 -0.14 -0.18 -0.71 -0.76
- -0.95 -0.34 -3.95 -2.72 -2.38 -2.86 -2.92 - -4.36 -3.52 -1.0 -4.17 -2.1 -0.13 -2.56 -2.74 3.26 2.8 -1.13 -1.75 -1.43 1.46 -4.37 -0.35 -2.42 -0.92 -2.48 -0.87 0.58 1.41
Bra026890 (PAP1)
-0.88 -1.03 -1.61 -1.12 -1.11 -0.3 -0.4 -0.52 -0.69 -0.37 -1.26 -0.14 -1.1 -1.28 -0.96 0.13 0.26 3.05 2.37 -0.01 -0.68 0.05 -0.83 -1.39 -1.43 -1.33 -1.05 -1.04 -1.38 -1.0 -1.45
Bra028485 (GDPD2)
-3.17 -2.43 1.06 0.51 -6.61 -7.68 -1.39 -0.04 -4.42 -0.99 -2.05 -0.92 -0.67 -5.71 - -2.14 -0.27 3.83 2.42 -2.16 -2.3 -3.38 -1.09 -1.88 -1.63 -0.67 -2.45 -3.38 -4.06 -1.1 -2.29
-0.56 0.49 0.02 0.25 -0.92 -0.49 -0.88 -1.15 -0.22 -0.64 -0.64 -0.73 -0.98 -0.13 -0.55 -0.87 -0.55 2.38 1.94 -0.41 -0.88 -0.45 0.55 -0.63 -0.46 -0.46 -0.64 -0.28 -0.37 -0.4 -0.37
Bra029480 (PFA-DSP4)
-0.73 -1.59 -0.69 -1.02 -0.64 -0.55 -0.57 -0.7 0.04 0.15 0.19 -0.26 -0.02 -1.14 -0.83 0.31 -0.26 2.48 2.09 0.33 0.1 0.42 -1.98 -0.91 -0.84 -0.76 -0.71 -0.69 -1.17 -1.11 -0.76
-0.76 -0.48 - -0.16 -1.58 -0.72 -4.67 -2.89 -0.8 -1.33 -1.08 -3.49 -2.2 -0.27 -1.51 -0.24 -0.3 3.39 3.36 -1.73 -1.14 -0.74 - -1.91 -4.35 -2.13 -3.42 -2.21 -2.65 - -
-1.45 -3.5 -1.32 -1.38 -1.83 -2.33 -0.11 0.05 -1.25 -0.99 -1.15 -0.48 0.39 -1.28 -1.02 0.07 0.31 2.98 2.26 0.13 -0.76 -1.41 -0.87 -0.07 -0.69 -0.96 -0.31 -0.25 -1.07 -0.72 -0.73
Bra031878 (PLAT3)
-0.54 - - -3.92 0.07 -1.11 -4.37 - -1.32 -2.77 -3.34 -1.97 -2.44 -0.22 -0.82 -0.83 -2.07 4.0 2.56 -2.6 -1.12 -2.63 -1.23 -2.26 -1.95 -4.3 -1.68 -0.88 -0.44 -3.15 -
Bra032470 (CCT1)
-0.49 -0.72 -0.94 -1.36 0.48 0.15 -0.44 -1.17 -0.95 -0.73 -0.93 -0.83 0.16 -1.32 -0.08 0.13 0.1 3.01 2.34 -0.12 -1.04 -0.34 -1.22 -1.48 -1.79 -1.72 -1.65 -1.53 -1.66 -1.64 -1.84
Bra032671 (RNS2)
-0.78 -0.62 -0.82 -0.85 -0.42 -0.39 -0.82 -1.13 -0.44 -0.21 -0.55 -0.35 -0.22 -0.09 -0.18 -0.52 -0.13 2.46 1.71 -0.37 -0.72 -0.16 1.04 -0.52 -0.56 -0.5 -0.41 -0.55 -0.62 -0.51 -0.35
-5.74 -5.19 -3.76 -6.39 -4.89 -3.78 -8.5 -6.14 -8.6 - -5.89 -7.05 -3.91 -7.32 -5.73 -5.58 -4.35 4.48 3.02 -3.58 - -7.43 -4.72 - - - - - - - -
-0.39 -0.33 -0.38 -0.89 -0.64 -0.43 -0.27 -0.66 -0.54 -0.32 -0.52 -0.44 -0.26 -0.43 -0.38 0.23 -0.04 2.74 1.7 0.22 -0.4 -0.21 0.49 -1.05 -0.98 -1.32 -1.08 -1.16 -0.93 -1.27 -0.93
Bra034304 (FAP2)
-3.16 -3.61 -3.17 -6.16 0.76 -0.25 -1.33 -2.26 -1.63 -1.52 -1.82 -1.32 -1.2 -1.18 -0.92 -1.61 -1.22 3.56 2.75 -0.65 -1.83 -1.01 -0.75 -1.32 -1.21 -1.86 -1.15 -0.37 -1.0 -1.75 -1.33
-1.75 -2.16 -2.77 -1.75 -0.59 -0.12 0.08 -0.41 -0.44 -0.45 -0.74 -0.69 -0.29 -0.46 -0.45 0.16 0.07 2.97 1.99 0.06 -0.37 -0.31 -1.49 -0.52 -0.4 -0.97 -0.59 -0.48 -0.75 -1.32 -1.41
Bra035466 (HISN1A)
-0.56 0.08 0.18 0.06 -3.77 -3.51 -0.87 -0.58 -1.73 -0.63 -0.77 -0.66 -0.15 -7.15 -4.36 -0.41 0.18 3.18 2.23 -0.11 -0.65 -0.27 -0.88 -1.15 -0.83 -0.71 -0.66 -2.18 -2.86 -0.75 -0.34
Bra037199 (MGD3)
-1.31 -3.68 -3.62 -1.91 0.35 -0.56 -1.57 -1.85 -0.84 -1.71 -1.45 -1.81 -1.99 0.37 -0.47 -1.62 -1.41 3.33 2.1 -1.1 -1.95 -1.81 -3.2 -0.72 -0.67 1.08 -0.9 0.65 0.51 -0.71 -2.72
Bra038357 (PHO1;H1)
-3.58 -1.64 -3.29 -5.44 -5.67 -4.74 -3.42 -2.31 -4.48 -3.05 - -2.75 -3.27 -2.5 -2.05 -1.64 -2.32 4.15 3.29 -2.98 -5.7 -2.97 -0.52 -5.15 - -6.38 -3.75 -4.49 -4.85 -5.06 -4.92
Bra039131 (VDAC1)
-1.27 -0.72 -1.83 -1.94 -0.97 -0.41 -0.66 -0.69 -1.2 -0.71 -0.99 -0.62 0.2 -0.56 0.09 -0.05 0.04 3.16 2.13 -0.29 -0.56 -0.78 0.24 -1.12 -1.2 -1.38 -0.95 -1.98 -2.14 -1.69 -0.54
-0.44 -0.97 -1.04 -0.93 0.27 -0.72 -0.87 -0.89 -0.31 -0.46 -0.3 -0.42 -0.7 -0.55 -0.6 -0.64 -0.65 2.52 2.01 -0.35 -0.87 -0.63 -1.22 -0.29 -0.21 -0.2 -0.25 0.44 -0.0 -0.21 -0.46
Bra040531 (PDLZ2)
0.46 -0.33 -1.59 -1.35 -0.94 -1.03 -2.59 -3.34 -2.17 -1.62 -2.32 -2.32 -2.28 -1.8 -1.47 -1.52 -1.02 3.94 2.66 -1.07 -2.14 -2.16 -2.43 -2.94 -3.12 -1.47 -3.34 -2.27 -2.16 -3.08 -3.13

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.