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Heatmap: Cluster_60 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view zlog-transformed or row-normalized)

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(Showing raw values)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000539 (SPX2)
 26.3 23.69 19.39 17.92 19.0 26.05 27.45 16.9 20.72 19.63 15.97 18.27 12.58 12.93 21.95 28.17 21.1 146.22 76.36 28.85 18.54 23.81 12.6 15.57 16.63 14.07 14.05 14.8 15.12 15.06 14.24
Bra002239 (MED19B)
 6.43 5.74 6.52 7.13 13.57 13.2 7.11 6.3 9.0 6.94 8.72 7.28 8.03 13.15 12.96 9.59 9.3 54.93 29.36 9.25 7.95 7.48 12.46 8.67 7.74 6.68 7.81 8.88 8.68 7.18 8.53
0.09 0.46 1.14 0.61 1.75 4.9 19.68 20.93 12.54 20.0 12.23 18.0 7.14 4.04 3.1 38.56 34.03 664.8 261.37 43.81 26.36 15.59 0.47 8.24 13.68 2.02 8.84 2.58 2.35 1.4 3.77
Bra003426 (TKL1)
 0.41 0.66 1.0 0.4 0.29 0.37 1.48 1.58 1.08 1.78 1.59 1.49 2.05 0.62 0.7 2.46 3.0 15.5 6.39 1.22 1.24 1.47 0.56 0.76 1.07 2.48 1.04 0.68 0.71 1.13 1.38
Bra005694 (SQD2)
 95.65 49.85 39.79 48.9 178.06 98.4 78.37 119.63 133.69 79.13 81.92 112.98 47.06 81.42 85.26 58.12 58.57 611.11 330.04 77.41 60.98 72.21 21.58 73.74 68.49 73.07 71.68 152.93 148.99 131.58 77.79
Bra006022 (DIC3)
 0.34 0.29 0.68 0.15 1.29 0.27 1.04 0.99 1.37 1.72 1.34 1.52 0.48 0.24 0.37 1.8 1.12 35.4 24.3 4.1 2.83 1.24 1.62 0.78 0.48 0.95 0.34 1.7 0.34 0.17 0.0
Bra006543 (SPX1)
 15.46 8.42 8.56 4.6 16.82 24.06 32.15 21.57 17.82 20.74 16.4 23.17 15.45 6.42 9.89 23.63 35.44 370.47 326.65 39.3 20.81 20.44 12.7 18.22 18.31 20.92 17.61 19.37 20.6 26.75 20.24
4.1 3.05 2.37 2.64 9.28 27.05 26.16 24.27 32.78 23.96 21.71 23.47 24.16 19.52 15.39 33.88 28.24 240.74 157.44 42.62 36.88 30.26 7.12 21.87 22.44 9.33 19.8 18.42 19.63 13.29 24.22
Bra007210 (UGP3)
 81.25 61.56 68.13 62.69 48.39 56.1 86.86 74.12 93.86 87.63 87.89 91.09 68.47 48.51 46.47 83.31 107.71 335.55 337.93 87.86 67.4 80.0 12.73 60.96 66.46 60.9 63.36 69.71 83.24 76.88 69.38
Bra007235 (AGAL3)
 8.71 14.58 7.91 9.86 21.38 26.87 23.46 16.71 24.15 23.52 24.29 24.75 22.48 30.28 33.49 27.29 29.86 118.05 63.52 29.13 21.87 27.0 45.28 22.31 21.74 17.5 21.7 17.65 18.45 18.25 29.17
34.83 29.34 29.12 30.48 29.23 32.92 32.7 28.12 43.27 45.04 39.5 46.22 22.91 24.97 24.43 34.89 37.37 120.09 113.37 45.92 38.2 43.99 8.2 21.87 22.25 17.92 24.06 24.64 25.45 24.29 20.91
Bra007963 (CRF8)
 29.27 27.47 33.04 28.9 59.56 84.38 68.65 53.86 62.73 60.04 62.92 50.4 55.63 65.4 84.51 62.59 87.77 682.01 405.16 110.87 60.5 65.34 42.82 45.5 45.16 26.71 48.38 47.71 53.53 40.54 44.44
Bra008171 (KJC1)
 3.15 3.46 2.8 2.96 4.35 2.77 2.03 2.19 2.15 2.65 2.64 2.86 3.02 2.98 3.32 4.12 4.16 28.97 14.66 2.57 2.23 3.11 4.48 1.76 2.32 1.82 1.93 2.8 2.24 2.6 2.3
Bra008855 (G6PD2)
 1.5 0.46 0.22 0.08 2.78 0.36 0.23 0.18 0.18 0.34 0.15 0.05 0.75 0.28 0.32 0.65 0.89 37.11 13.37 0.97 0.35 0.37 0.82 0.82 0.78 0.6 0.45 1.82 0.61 0.25 0.36
13.46 23.9 8.35 5.93 12.32 20.44 18.81 17.99 29.74 15.43 22.6 21.2 45.91 23.98 39.59 39.13 36.19 226.45 177.95 37.59 16.26 21.52 13.95 32.14 29.52 20.65 25.93 13.26 27.78 26.28 70.16
Bra009633 (SQD2)
 4.85 3.49 2.19 2.23 9.05 11.0 6.41 2.55 7.19 5.27 6.13 6.42 7.16 7.36 10.73 13.44 14.51 342.41 180.69 17.91 6.73 9.15 5.76 11.47 10.18 8.38 9.63 9.32 13.17 9.75 13.67
Bra011407 (SQD1)
 17.44 15.17 18.39 20.08 14.95 13.74 35.91 35.58 20.53 34.36 26.39 32.28 36.09 13.46 15.67 45.02 41.46 202.51 138.33 39.38 30.97 29.28 21.06 35.88 35.64 32.12 36.08 35.4 27.32 28.83 39.0
2.16 1.13 0.95 0.74 3.63 3.55 2.56 1.29 2.65 1.89 1.44 1.67 1.86 1.77 1.99 4.43 3.62 237.23 107.27 4.4 1.52 2.15 0.77 2.26 2.18 1.37 2.0 1.86 2.46 2.9 3.07
0.36 0.54 0.27 0.46 0.34 0.63 0.77 0.63 1.77 1.05 1.62 1.82 0.8 0.87 0.84 1.55 1.49 36.72 17.49 1.83 1.19 1.99 0.43 0.63 1.1 0.32 1.07 0.99 1.18 1.43 1.23
Bra012665 (KUA1)
 14.25 10.06 11.68 13.46 12.89 10.71 6.13 9.39 9.1 8.55 8.5 8.02 7.28 11.54 11.7 7.21 8.53 55.87 28.45 6.66 7.9 8.51 5.55 7.95 8.89 11.8 9.14 11.59 12.03 10.03 8.66
Bra013819 (PGI)
 2.53 1.78 1.03 1.85 3.31 3.67 7.94 12.31 4.26 4.87 4.84 4.94 7.17 3.1 3.81 5.78 6.37 41.35 24.85 4.69 3.69 4.0 2.68 5.07 4.93 4.19 5.5 6.3 5.11 5.24 7.2
Bra014262 (SPP1)
 0.29 0.28 0.24 0.14 2.22 0.44 0.24 0.16 0.67 0.28 0.26 0.28 0.44 0.49 0.45 0.56 0.32 33.95 19.78 0.67 0.28 0.43 0.05 0.83 0.81 0.49 0.95 1.43 1.28 1.03 0.52
3.8 3.82 3.42 2.85 5.78 8.39 7.96 5.3 5.82 5.45 6.0 5.06 4.79 5.28 5.92 5.51 6.48 33.56 25.97 7.66 4.84 6.21 6.87 7.3 7.32 4.25 7.37 5.57 7.59 5.56 6.44
Bra015928 (GDPD5)
 2.72 4.07 4.78 2.54 7.09 7.61 5.62 3.88 6.02 6.35 5.47 7.95 4.57 4.36 6.07 6.89 9.14 53.22 27.23 7.85 5.64 7.25 7.59 8.84 7.98 6.25 7.9 6.45 7.92 9.29 9.82
Bra016591 (PEPC1)
 11.48 2.73 1.56 0.61 3.5 5.31 10.14 1.72 2.34 2.55 2.45 2.23 1.64 0.8 1.35 6.87 8.07 542.42 326.04 18.32 3.17 2.96 0.87 1.11 1.45 0.73 0.54 2.44 1.65 0.14 0.06
Bra017108 (PECT1)
 1.68 1.81 0.87 0.83 5.5 4.54 2.74 1.49 4.12 2.91 2.74 2.79 2.97 4.02 4.79 4.28 3.83 30.85 16.12 3.19 3.36 3.67 4.26 3.05 3.13 2.49 3.03 4.48 4.6 1.53 1.24
2.81 2.21 0.31 1.51 3.53 5.56 1.93 0.94 1.77 3.53 0.58 1.93 2.03 2.13 3.39 1.2 1.05 75.06 24.01 1.82 0.81 1.03 1.61 2.47 1.78 1.81 1.94 2.13 2.22 1.87 4.41
Bra018150 (PS3)
 34.29 28.26 24.94 15.94 21.6 68.66 59.97 34.58 52.69 59.26 64.9 57.18 38.27 28.55 31.48 76.02 76.16 370.82 276.48 100.22 73.15 72.1 109.91 70.31 81.1 48.14 80.38 59.79 52.81 34.59 39.63
0.09 0.41 0.3 0.06 0.24 0.37 5.0 1.84 2.01 3.81 3.36 4.57 2.67 0.32 0.38 3.5 12.08 742.43 326.65 14.65 3.49 3.74 1.92 3.73 2.53 1.32 3.16 0.59 0.52 0.74 1.22
Bra021274 (PAP17)
 0.96 0.56 1.3 0.73 2.21 3.37 12.72 12.11 3.67 6.76 4.2 4.88 12.59 0.25 0.97 15.94 16.02 304.25 115.47 19.8 10.04 11.46 3.86 10.19 9.52 5.39 9.53 4.94 3.91 3.61 4.31
5.81 6.81 7.02 7.7 4.59 3.72 6.72 8.65 3.42 5.63 4.15 5.59 7.8 3.83 4.49 7.93 7.99 36.37 25.28 6.96 7.14 5.41 3.85 8.21 8.81 7.97 8.98 7.42 4.57 5.41 9.33
2.75 1.91 2.31 1.7 6.76 6.41 4.75 2.94 3.74 4.15 3.77 4.34 4.44 7.34 4.98 3.9 6.41 42.9 27.63 5.27 4.11 4.59 6.68 7.32 5.87 3.87 5.38 6.05 5.87 4.07 3.91
0.0 0.07 0.1 0.01 0.02 0.02 0.02 0.02 0.0 0.01 0.01 0.06 0.01 0.03 0.12 0.02 0.02 1.25 0.9 0.06 0.04 0.05 0.36 0.01 0.1 0.02 0.07 0.02 0.07 0.19 0.34
Bra026890 (PAP1)
 2.94 2.65 1.78 2.48 2.51 4.38 4.11 3.77 3.35 4.18 2.26 4.9 2.52 2.23 2.79 5.92 6.49 44.89 27.99 5.38 3.38 5.59 3.05 2.06 2.01 2.15 2.61 2.64 2.08 2.71 1.99
Bra028485 (GDPD2)
 0.19 0.32 3.58 2.44 0.02 0.01 0.65 1.67 0.08 0.87 0.41 0.91 1.08 0.03 0.0 0.39 1.42 24.41 9.2 0.38 0.35 0.16 0.81 0.47 0.56 1.08 0.31 0.17 0.1 0.8 0.35
10.38 21.52 15.55 18.19 8.08 10.89 8.33 6.92 13.13 9.83 9.81 9.21 7.78 13.97 10.48 8.37 10.45 79.75 58.68 11.55 8.32 11.21 22.39 9.9 11.13 11.1 9.8 12.61 11.81 11.61 11.88
Bra029480 (PFA-DSP4)
 8.09 4.46 8.35 6.61 8.61 9.16 9.05 8.28 13.82 14.92 15.3 11.26 13.28 6.1 7.56 16.66 11.19 74.71 57.12 16.89 14.4 17.98 3.41 7.16 7.51 7.91 8.2 8.33 5.99 6.25 7.93
0.36 0.43 0.0 0.54 0.2 0.37 0.02 0.08 0.35 0.24 0.29 0.05 0.13 0.5 0.21 0.51 0.49 6.3 6.18 0.18 0.27 0.36 0.0 0.16 0.03 0.14 0.06 0.13 0.1 0.0 0.0
0.37 0.09 0.41 0.39 0.29 0.2 0.94 1.04 0.42 0.51 0.45 0.72 1.33 0.42 0.5 1.06 1.25 8.0 4.83 1.1 0.6 0.38 0.55 0.97 0.63 0.52 0.82 0.85 0.48 0.62 0.61
Bra031878 (PLAT3)
 0.4 0.0 0.0 0.04 0.61 0.27 0.03 0.0 0.23 0.09 0.06 0.15 0.11 0.5 0.33 0.33 0.14 9.39 3.44 0.1 0.27 0.09 0.25 0.12 0.15 0.03 0.18 0.32 0.43 0.07 0.0
Bra032470 (CCT1)
 4.88 4.14 3.57 2.65 9.5 7.57 5.04 3.02 3.54 4.11 3.58 3.84 7.62 2.73 6.44 7.47 7.32 54.84 34.52 6.28 3.33 5.39 2.92 2.45 1.98 2.07 2.17 2.37 2.16 2.2 1.91
Bra032671 (RNS2)
 47.46 53.29 46.37 45.5 61.16 62.34 46.22 37.38 60.39 70.6 55.72 64.02 70.08 76.65 72.37 57.11 74.5 449.98 266.95 63.3 49.56 73.2 168.38 56.91 55.46 57.66 61.38 55.92 53.15 57.26 64.07
0.05 0.07 0.2 0.03 0.09 0.2 0.01 0.04 0.01 0.0 0.05 0.02 0.18 0.02 0.05 0.06 0.13 60.39 21.87 0.23 0.0 0.02 0.1 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
3.38 3.52 3.4 2.39 2.85 3.29 3.67 2.8 3.06 3.56 3.09 3.27 3.7 3.29 3.42 5.2 4.33 29.57 14.47 5.19 3.36 3.83 6.25 2.14 2.25 1.78 2.1 1.99 2.33 1.84 2.33
Bra034304 (FAP2)
 0.17 0.12 0.16 0.02 2.51 1.25 0.59 0.31 0.48 0.52 0.42 0.59 0.64 0.65 0.78 0.49 0.63 17.45 9.97 0.95 0.42 0.74 0.88 0.59 0.64 0.41 0.67 1.15 0.74 0.44 0.59
17.85 13.39 8.76 17.87 39.94 55.2 63.4 44.95 44.2 43.99 35.77 37.17 48.86 43.5 43.92 66.9 62.96 469.87 238.41 62.26 46.46 48.35 21.29 41.65 45.33 30.51 39.74 42.88 35.55 24.0 22.53
Bra035466 (HISN1A)
 20.64 32.21 34.55 31.84 2.24 2.68 16.66 20.38 9.17 19.69 17.83 19.35 27.53 0.22 1.48 22.89 34.55 276.79 142.65 28.33 19.49 25.36 16.58 13.77 17.12 18.64 19.29 6.74 4.21 18.08 24.17
Bra037199 (MGD3)
 5.99 1.16 1.2 3.95 18.93 10.05 4.98 4.12 8.28 4.52 5.44 4.22 3.73 19.13 10.73 4.84 5.58 149.25 63.76 6.94 3.83 4.24 1.62 9.04 9.31 31.32 7.92 23.29 21.13 9.09 2.25
Bra038357 (PHO1;H1)
 0.03 0.13 0.04 0.01 0.01 0.01 0.04 0.08 0.02 0.05 0.0 0.06 0.04 0.07 0.09 0.13 0.08 6.96 3.85 0.05 0.01 0.05 0.27 0.01 0.0 0.0 0.03 0.02 0.01 0.01 0.01
Bra039131 (VDAC1)
 11.16 16.34 7.57 7.01 13.8 20.28 17.07 16.72 11.71 16.44 13.55 17.53 31.02 18.32 28.72 25.94 27.62 240.67 117.6 22.07 18.25 15.74 31.92 12.36 11.7 10.35 13.9 6.82 6.12 8.34 18.52
14.64 10.16 9.68 10.38 23.88 12.0 10.89 10.69 15.94 14.4 16.15 14.85 12.19 13.57 13.05 12.7 12.67 114.0 79.64 15.57 10.84 12.78 8.5 16.2 17.11 17.3 16.71 26.97 19.79 17.11 14.42
Bra040531 (PDLZ2)
 7.89 4.55 1.9 2.24 2.98 2.81 0.95 0.57 1.27 1.86 1.15 1.15 1.18 1.64 2.06 1.99 2.83 87.97 36.23 2.73 1.3 1.28 1.06 0.75 0.66 2.07 0.57 1.19 1.28 0.68 0.65

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)