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Heatmap: Cluster_180 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view zlog-transformed or row-normalized)

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(Showing raw values)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000112 (GNAT8)
 6.57 9.12 10.65 7.48 11.05 9.7 9.95 20.88 5.87 7.39 7.43 5.98 28.11 16.81 20.07 18.82 16.87 16.66 7.92 5.9 8.75 8.15 78.64 13.04 12.52 10.32 13.61 11.38 9.08 10.02 18.59
Bra000157 (EIF2)
 9.16 8.9 9.75 9.37 13.12 12.91 11.25 15.34 7.38 10.26 6.69 8.9 18.34 13.54 16.43 14.34 12.29 12.28 9.81 10.11 9.46 9.14 46.25 11.6 11.91 10.74 12.62 11.58 9.38 8.83 11.49
Bra000743 (EIF3A)
 5.73 6.02 6.07 5.73 6.3 6.69 5.8 8.87 3.82 4.57 4.53 4.21 11.34 7.72 9.09 7.79 7.68 7.42 4.25 5.55 5.62 5.33 25.13 6.52 6.79 6.7 6.82 6.09 5.49 6.08 9.39
7.3 8.08 9.75 6.6 7.0 7.19 6.27 8.88 4.8 5.5 5.09 4.84 10.62 8.82 10.08 8.18 7.29 9.18 5.24 5.16 5.62 5.47 26.83 6.93 7.47 6.97 7.26 7.27 6.92 7.54 9.56
Bra002337 (CCT2)
 9.18 9.68 10.08 7.32 13.34 11.33 10.59 13.88 8.51 10.9 9.45 8.95 17.57 18.12 19.34 15.36 14.43 14.24 10.01 10.65 9.34 10.89 30.1 11.49 13.09 11.1 13.2 11.75 12.44 12.7 16.07
Bra002799 (SYNC1)
 10.68 13.87 12.51 11.97 16.59 18.27 13.65 20.48 8.26 8.93 8.91 8.54 21.34 20.7 25.29 17.85 15.93 18.86 10.62 12.87 12.07 12.78 72.28 14.81 14.37 13.53 14.47 12.78 11.19 11.04 17.15
Bra003984 (SAG24)
 79.85 115.19 115.75 121.33 95.21 110.3 117.01 171.13 64.56 99.32 92.84 88.86 281.69 185.46 211.71 210.74 182.77 149.45 90.49 125.81 138.68 125.75 839.87 139.26 142.75 138.93 148.61 126.87 85.45 91.12 163.6
Bra005421 (L18aB)
 17.54 31.59 46.75 45.48 44.75 53.59 58.39 82.81 15.12 33.85 29.56 27.11 90.74 88.1 99.6 86.09 65.0 62.95 44.6 41.13 64.5 61.76 284.5 58.58 66.29 68.27 67.9 40.37 24.83 30.77 73.25
8.01 9.93 10.75 9.58 12.05 10.85 10.02 15.14 7.65 8.02 7.41 6.91 17.32 11.78 13.61 12.0 12.88 12.27 7.52 7.85 9.85 8.9 34.63 9.53 10.28 9.81 9.98 12.33 9.73 8.71 11.22
Bra007079 (GCN4)
 11.11 13.36 13.6 11.91 14.31 15.66 14.49 17.93 9.3 9.51 10.33 9.39 16.97 14.37 16.45 15.11 14.12 14.69 10.31 10.7 12.04 10.86 44.77 11.57 12.09 11.49 12.01 10.58 11.8 12.37 16.12
Bra008004 (TFIIIA)
 1.2 1.57 1.71 2.0 2.99 3.92 2.25 4.12 1.37 1.71 1.36 1.19 3.3 4.73 4.58 3.01 2.43 2.18 1.51 1.8 1.85 1.69 6.96 2.18 2.25 1.75 2.71 1.97 2.71 1.79 3.54
Bra008652 (CCT6-1)
 4.63 4.38 4.73 3.63 5.23 4.5 4.25 6.22 4.11 4.55 4.33 3.78 10.17 7.56 7.61 6.36 6.81 7.57 4.52 4.39 5.01 5.7 11.86 5.01 5.51 5.08 5.11 4.7 3.95 5.03 7.94
Bra010248 (DCAF1)
 1.75 1.9 1.69 1.33 2.26 2.36 1.72 2.34 1.45 1.32 1.44 1.51 2.41 3.19 3.17 2.21 2.16 2.3 1.69 1.69 1.61 1.44 4.89 1.61 1.9 1.75 2.18 1.73 2.04 2.13 2.83
0.46 0.44 0.16 0.43 0.74 0.69 0.74 1.53 0.25 0.32 0.22 0.19 0.9 1.28 1.68 0.63 0.77 1.09 0.6 0.57 0.42 0.41 4.58 0.67 0.72 0.89 0.89 0.71 0.67 0.62 1.55
Bra011251 (IBI1)
 15.6 19.1 14.91 15.05 18.0 18.35 16.14 22.8 10.67 12.28 11.67 11.26 23.11 21.14 24.1 17.12 16.34 17.26 9.96 11.94 13.26 13.06 60.66 14.41 16.02 13.02 15.65 15.31 13.12 13.59 19.0
Bra011910 (SR33)
 2.17 1.79 2.63 2.16 2.51 4.33 2.24 3.23 1.49 1.24 1.68 1.3 3.54 6.11 6.96 3.29 2.52 3.85 2.64 2.27 2.0 1.57 8.55 2.95 3.1 2.79 3.46 2.42 2.8 2.09 4.54
49.36 78.59 64.08 52.24 70.45 75.81 65.87 91.74 49.49 50.41 45.27 46.25 94.66 88.28 96.41 66.46 62.59 89.39 53.88 59.41 64.28 70.67 255.65 61.61 62.36 55.98 65.34 53.47 57.15 54.39 79.26
Bra013385 (RLI2)
 7.9 9.52 10.31 7.7 9.32 10.0 9.11 12.51 6.77 7.31 7.08 6.85 14.98 14.74 16.44 12.64 12.2 11.65 8.19 7.93 8.53 8.43 44.13 7.8 7.62 7.82 8.15 7.18 6.1 6.66 8.35
2.3 2.98 2.09 2.04 3.94 4.84 3.75 5.76 2.24 2.36 2.27 2.36 5.61 5.62 6.51 4.8 4.37 5.1 2.71 3.53 2.89 2.71 12.2 4.27 4.49 3.76 4.19 4.12 4.06 4.5 6.15
0.09 0.11 0.04 0.08 0.11 0.23 0.25 0.4 0.12 0.14 0.02 0.11 0.37 0.26 0.64 0.29 0.17 0.61 0.23 0.16 0.26 0.18 2.06 0.33 0.34 0.31 0.3 0.35 0.24 0.24 0.68
77.07 92.06 72.04 98.45 127.31 145.34 122.51 146.21 67.4 65.26 62.53 67.92 174.82 138.86 164.59 142.16 123.46 114.3 83.62 92.32 105.11 93.51 290.66 116.76 122.85 109.62 116.96 98.82 87.4 87.67 126.06
Bra016657 (PWP2)
 0.85 0.64 0.73 0.34 0.63 0.39 0.49 1.23 0.12 0.22 0.21 0.11 1.16 0.83 1.31 0.53 0.82 1.28 0.4 0.21 0.3 0.26 5.54 0.75 0.75 0.54 0.96 0.55 0.56 0.63 1.71
10.3 11.81 10.53 9.71 22.7 22.81 13.37 21.67 11.9 9.44 9.13 10.64 19.71 25.68 24.44 15.65 15.69 16.53 12.42 12.88 14.77 13.9 39.78 15.58 12.56 11.6 12.91 13.78 13.82 11.28 20.13
0.55 0.86 0.8 0.56 0.88 1.18 0.96 2.02 0.53 0.48 0.41 0.5 1.52 1.63 1.88 0.8 0.96 1.33 0.52 0.58 0.7 0.58 4.49 0.89 1.01 0.88 1.07 0.95 0.82 0.77 1.43
Bra017004 (SMO4)
 10.38 10.89 8.63 9.08 13.28 12.5 13.01 20.66 7.23 7.27 7.08 7.65 20.32 15.76 18.35 14.42 10.82 18.4 8.71 9.43 10.59 9.64 54.01 12.75 12.59 11.99 13.27 11.74 10.36 10.22 17.32
Bra017131 (FAC1)
 0.74 0.92 0.96 0.58 2.14 2.96 1.02 1.84 0.93 1.22 0.62 0.87 1.64 3.07 3.78 2.21 1.97 3.41 1.45 1.25 1.61 0.93 7.84 1.07 1.02 1.14 1.26 1.05 1.06 0.58 1.37
Bra018567 (ADCP1)
 0.1 0.29 0.16 0.07 0.61 0.92 0.23 0.42 0.1 0.14 0.13 0.1 0.52 0.72 0.82 0.43 0.38 0.82 0.09 0.1 0.18 0.09 2.07 0.16 0.28 0.24 0.21 0.15 0.21 0.18 0.56
3.88 5.02 6.2 5.23 7.63 7.6 5.8 8.29 2.64 3.49 3.18 2.88 8.57 7.47 8.76 6.09 5.34 8.08 4.24 4.19 5.37 4.45 17.18 7.39 6.74 5.84 6.68 5.76 6.21 5.09 6.51
Bra019933 (SNL6)
 0.6 0.88 0.69 0.68 0.88 1.49 0.88 2.0 0.55 0.72 0.76 0.57 1.82 1.9 2.41 1.6 1.23 1.76 0.96 1.08 0.74 0.85 6.29 1.39 1.49 1.31 1.47 1.34 1.53 1.23 1.97
Bra019994 (U2A')
 6.72 9.13 8.96 6.98 10.56 10.73 7.15 9.45 7.38 6.83 7.23 6.18 10.45 12.91 13.9 9.69 9.05 8.61 6.26 7.18 7.28 7.21 25.54 10.35 10.87 8.31 10.45 9.31 8.6 8.74 12.44
5.35 7.36 5.93 4.92 8.2 9.76 9.21 17.91 4.09 6.29 3.86 3.82 16.0 9.33 9.87 8.71 8.38 10.45 4.33 6.65 6.7 5.35 39.18 9.74 12.3 7.5 10.6 7.9 8.68 7.58 13.83
Bra020542 (LOS1)
 8.95 13.88 12.1 10.85 13.05 14.83 12.29 16.3 7.01 9.17 8.06 9.46 19.65 18.98 22.59 18.08 15.43 16.27 9.81 9.41 10.55 10.77 57.4 13.75 14.78 13.72 15.01 14.52 11.92 12.0 17.31
20.93 26.81 26.48 21.87 26.53 31.28 27.07 39.81 17.34 20.11 20.26 19.11 42.28 41.06 40.81 37.18 31.7 33.49 23.16 22.53 22.86 25.9 113.44 22.8 23.34 24.16 23.32 22.52 19.79 20.95 29.35
5.38 6.05 5.34 3.75 8.19 8.59 7.0 11.18 3.6 3.64 3.46 3.25 9.25 7.12 9.99 9.18 8.49 8.41 4.9 5.63 6.12 6.1 35.26 8.36 9.91 9.09 10.31 8.11 7.21 7.92 10.98
0.88 1.02 0.91 0.42 1.46 1.37 1.7 2.85 0.7 0.66 0.93 1.19 1.67 2.18 3.26 1.72 1.63 3.06 1.33 1.34 1.21 1.08 8.83 1.53 1.48 0.95 1.46 1.33 1.31 1.05 2.61
Bra022462 (NBP35)
 5.95 11.73 8.23 6.44 6.56 6.6 7.23 8.52 4.83 5.52 5.53 5.52 9.04 8.83 11.38 8.09 7.73 12.02 7.24 6.1 5.63 5.83 55.57 7.45 7.41 6.58 8.02 7.89 5.85 5.74 8.28
49.53 70.16 69.73 75.16 63.56 100.08 86.22 115.05 41.9 47.06 48.88 43.93 140.06 120.03 189.49 96.42 91.59 87.16 61.27 64.71 82.43 80.2 383.45 115.65 116.47 100.36 109.32 75.52 57.95 50.42 95.87
Bra023575 (ABCF1)
 20.43 25.08 24.81 21.36 22.42 24.76 18.63 24.02 14.56 14.59 14.19 13.68 25.77 32.42 32.27 24.38 19.85 28.72 17.78 15.13 16.08 17.3 110.91 16.81 17.31 19.22 17.76 17.57 16.45 18.99 22.92
0.67 1.07 0.96 0.75 1.5 2.0 1.37 2.08 0.72 0.6 0.78 0.85 1.8 1.79 2.42 1.8 1.31 2.01 0.92 0.8 1.0 0.89 6.76 1.48 1.39 1.06 1.63 1.35 1.46 1.48 2.04
Bra024720 (RID1)
 1.71 1.61 1.67 1.39 2.58 2.82 1.95 2.46 1.59 1.34 1.19 1.1 2.31 3.21 3.78 2.36 1.97 2.17 1.84 1.53 1.84 1.49 6.09 1.96 1.84 1.82 1.57 1.79 1.75 1.39 1.78
Bra025548 (PHB3)
 11.16 14.81 14.17 12.94 13.63 18.44 14.14 15.98 6.7 9.53 8.83 7.6 17.55 18.35 22.38 16.04 16.97 16.22 10.84 11.27 15.52 12.31 59.7 12.84 15.28 14.8 15.08 13.82 9.38 9.66 19.22
Bra026200 (TWN2)
 3.85 4.91 5.49 5.75 7.69 7.23 6.25 8.13 5.39 5.66 5.31 5.26 8.49 9.77 11.32 7.79 7.84 7.45 5.15 5.86 5.75 5.78 15.65 5.86 6.34 6.18 6.58 7.19 6.54 6.32 8.58
Bra026724 (RH36)
 1.8 1.93 1.74 1.12 1.89 1.81 1.8 2.92 0.63 0.97 0.82 0.85 3.55 1.85 2.95 1.8 1.88 2.66 1.48 1.13 1.26 0.99 9.95 1.84 1.56 1.47 1.82 1.46 1.27 1.5 1.81
4.84 5.15 4.59 6.3 10.13 11.87 9.09 14.58 5.25 4.79 6.2 6.07 15.37 11.69 15.13 12.65 9.67 10.12 8.51 6.81 7.96 6.08 29.66 8.87 8.6 10.26 8.85 9.41 7.43 8.44 12.39
11.21 14.44 17.89 10.66 13.81 14.07 11.5 13.67 9.09 10.41 11.21 9.4 20.79 19.94 23.64 14.96 12.96 26.25 12.0 11.18 13.18 11.68 44.87 10.4 11.45 9.75 10.98 9.63 9.69 10.12 15.89
1.59 2.31 2.18 1.33 1.93 2.4 2.58 3.61 1.48 2.04 1.74 1.75 4.86 3.99 3.96 3.63 3.05 3.71 2.21 2.53 2.5 1.67 6.8 2.26 2.7 2.9 2.72 2.7 2.31 2.71 3.27
Bra029921 (OTP439)
 0.57 0.59 0.69 0.38 0.62 1.0 0.71 1.13 0.42 0.39 0.35 0.25 0.71 0.86 1.28 0.59 0.65 0.96 0.44 0.6 0.45 0.48 2.63 0.92 0.9 0.65 0.89 0.65 0.59 0.71 1.46
1.09 0.88 0.97 0.97 2.73 4.0 1.47 2.35 1.31 1.37 0.99 1.0 3.0 3.35 4.51 2.45 2.05 3.09 1.39 1.83 1.5 1.36 9.4 2.07 1.87 1.3 1.11 1.23 1.33 1.31 2.32
1.94 2.26 1.57 1.13 3.88 4.7 4.11 10.94 1.48 2.02 1.52 1.63 9.75 5.27 8.79 5.07 5.2 10.36 3.3 3.31 2.32 3.11 29.99 5.97 5.67 4.43 6.12 5.46 4.19 5.36 10.3
Bra032059 (EIF3B)
 4.19 4.48 3.72 3.45 4.2 4.8 3.7 5.49 2.0 2.58 2.49 2.6 5.17 3.94 5.04 4.62 4.37 5.57 3.36 2.81 3.27 2.44 13.86 3.68 3.95 3.28 3.68 3.76 3.03 3.81 4.78
Bra032135 (SNRNP-G)
 118.99 156.82 127.86 171.12 168.8 180.28 150.27 241.5 69.04 88.72 99.66 90.3 310.46 269.54 307.87 223.34 198.81 202.18 104.35 175.32 210.02 158.78 952.44 197.64 195.58 150.93 166.11 157.61 89.1 113.25 170.78
25.0 24.45 21.47 25.68 37.96 43.32 32.94 36.11 24.98 22.95 23.79 25.64 39.5 51.21 54.01 34.63 29.39 29.19 26.65 30.86 30.28 28.02 72.12 31.62 30.25 27.94 31.64 32.6 31.72 24.73 30.3
Bra032620 (RPP1C)
 50.21 75.82 73.34 88.02 76.4 107.79 91.33 124.31 44.9 60.66 57.76 47.52 189.77 151.62 187.38 117.22 117.25 130.49 59.69 81.52 90.8 95.59 593.79 98.82 92.27 82.54 95.17 84.28 56.56 43.97 96.79
Bra033708 (TOM9-2)
 68.95 81.94 85.75 57.25 109.3 97.05 92.13 117.43 52.38 61.7 44.83 47.02 132.98 132.42 121.9 84.11 91.44 164.68 77.96 79.15 98.24 87.92 473.41 79.08 82.98 55.35 93.28 76.84 70.74 67.63 87.96
1.7 2.06 1.12 1.85 3.73 4.8 4.13 6.96 2.54 1.9 2.28 1.54 6.79 6.23 8.23 4.75 5.76 7.04 3.32 3.74 3.94 2.34 17.22 3.53 4.6 3.68 4.39 3.1 3.27 2.99 6.48
Bra034554 (EIF3K)
 2.11 2.64 4.64 4.37 2.46 4.97 3.53 6.9 1.57 2.78 3.42 3.17 8.61 8.29 10.86 5.94 5.54 13.49 2.64 3.59 4.97 3.89 24.59 2.96 2.67 3.32 2.83 3.07 1.56 1.58 3.65
Bra035257 (SBB1)
 9.69 10.81 10.1 6.73 11.49 11.56 11.02 13.29 5.53 7.66 7.18 9.13 17.34 11.58 17.7 15.41 16.5 14.18 9.3 11.04 13.05 11.41 52.47 11.58 11.52 11.56 11.18 7.46 6.25 9.05 16.05
4.07 5.14 4.99 6.5 5.63 5.28 4.97 7.29 2.8 3.27 3.44 3.13 9.06 7.01 7.43 6.36 6.17 7.37 3.81 4.42 5.65 4.72 22.29 5.72 6.25 5.59 5.97 5.29 3.84 4.17 7.6
0.76 1.06 1.56 0.96 1.39 1.47 0.88 1.83 0.76 0.86 1.03 0.93 2.44 1.89 2.96 2.12 1.43 3.04 1.37 1.43 1.29 1.27 6.17 0.98 1.02 0.82 1.08 0.66 0.54 0.56 1.0
Bra038023 (PARN)
 2.23 1.86 1.9 1.52 2.4 2.65 1.71 2.59 1.26 1.26 1.45 1.48 2.92 3.35 3.72 2.82 2.32 2.48 1.63 1.43 1.92 1.49 4.6 2.22 1.95 1.96 2.23 2.27 1.8 2.29 3.23
Bra038501 (PSD1)
 1.37 1.44 1.15 1.3 1.89 2.11 1.93 2.74 0.63 0.86 0.67 0.65 2.67 2.11 2.22 1.81 2.49 1.87 0.79 0.93 1.24 0.95 8.99 1.41 1.67 1.27 1.53 1.39 0.86 0.79 2.59
Bra038675 (ATKRS-1)
 11.46 17.04 15.21 14.2 11.04 11.58 13.9 21.37 6.53 8.64 7.76 7.29 20.42 17.75 22.24 14.08 14.9 15.53 9.34 8.85 10.01 9.94 58.47 12.23 12.45 14.69 13.7 11.6 10.55 11.38 20.07
5.67 7.17 10.58 7.24 6.1 5.72 8.43 14.97 5.26 6.26 5.97 5.61 15.92 9.39 10.97 9.91 8.99 10.56 5.05 6.57 7.05 6.81 36.39 7.49 8.28 8.26 7.55 6.78 7.49 7.89 14.92

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)