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Heatmap: Cluster_123 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000663 (APX4)
 489.54 423.14 379.28 388.12 236.59 151.16 351.6 449.66 480.62 346.91 370.2 475.41 196.75 103.11 76.87 134.49 201.78 110.68 202.26 189.28 210.68 223.59 32.21 304.93 317.09 314.56 328.14 378.68 419.35 518.94 319.38
Bra002999 (LHCB3)
 5589.84 4237.68 4196.48 4957.22 3244.57 3128.12 3958.97 4143.67 5458.03 3386.45 4218.31 4484.67 2220.2 2570.18 1747.26 1793.56 2277.52 1503.25 3240.71 2355.34 2849.79 2683.14 477.78 4476.45 4390.65 4142.17 3879.13 6017.6 6799.76 5570.84 3178.66
236.11 209.68 197.15 181.83 180.47 151.94 172.19 199.31 221.94 178.03 192.66 202.11 113.47 113.64 107.45 120.64 133.04 77.07 145.39 142.66 135.21 135.62 30.96 149.94 153.82 152.57 156.15 182.18 224.64 234.74 195.55
Bra003451 (LHCA2)
 1418.04 1301.81 1342.76 1290.28 990.35 899.36 971.87 1004.8 1412.78 1222.11 1293.47 1310.66 809.54 883.76 775.96 786.31 791.25 557.86 998.83 975.19 908.12 916.53 241.09 1099.7 1152.02 1137.08 1185.21 1500.03 1726.86 1625.7 1304.6
Bra005405 (GPS1)
 96.25 78.75 83.05 112.53 71.0 72.87 81.74 74.78 134.39 112.96 128.04 111.24 67.59 56.67 52.98 84.58 80.1 28.89 85.43 76.85 87.6 83.36 13.55 117.57 120.56 122.24 107.23 145.38 183.09 125.85 93.49
Bra005423 (LHB1B2)
 1459.85 1455.93 1518.54 1560.93 670.51 658.91 699.73 819.62 819.08 812.05 1028.65 1238.93 403.08 523.43 443.97 418.03 487.75 545.72 1048.31 631.0 632.41 706.29 141.84 1100.93 1083.12 1153.39 1086.97 1358.45 1536.24 1734.14 1105.3
Bra007109 (LHCA1)
 3992.55 3449.07 3343.13 3912.87 2082.83 2042.2 3362.99 3768.61 3991.55 3218.86 3318.97 3826.07 1961.48 1497.3 1297.11 1695.72 2197.26 1206.26 2491.14 2307.83 2482.95 2404.16 335.2 3734.32 3667.18 3507.22 3683.37 4626.27 5048.05 4842.09 3228.21
Bra012083 (OEE1)
 1338.96 1262.17 1331.13 1368.64 912.75 846.76 1038.33 1068.14 1265.61 1227.3 1270.6 1208.55 843.78 716.09 578.64 947.54 946.62 604.93 1175.11 1136.78 1105.16 1063.71 198.62 1568.55 1679.39 1678.68 1744.7 1656.23 1889.4 2027.66 1746.59
Bra012475 (COL16)
 75.3 64.96 68.09 62.08 62.16 59.77 66.32 66.98 58.08 63.56 66.83 63.04 45.62 45.75 46.05 58.08 61.06 46.73 65.18 63.16 56.88 66.57 36.94 86.11 91.19 93.72 93.39 78.93 90.39 107.07 93.74
Bra013183 (LHCB2)
 3364.57 3049.07 2780.04 3288.05 1538.01 902.47 1883.81 2064.42 3151.32 2005.84 2714.36 2836.54 1080.23 618.7 429.06 714.14 1069.79 935.07 1733.86 1192.21 1418.35 1528.73 284.57 2301.27 2250.1 2505.73 2366.42 3864.98 3210.13 4062.57 2589.57
Bra014433 (LHCA2)
 3019.93 2517.36 2330.11 3004.6 2311.48 2257.29 2731.79 2565.0 3388.95 3439.4 3406.86 3451.11 2171.69 1902.67 1519.91 2567.37 2595.73 1133.09 2827.11 2871.56 2868.0 2835.37 532.54 3847.14 3977.57 3538.26 3944.11 4007.41 4260.69 4268.85 3426.97
Bra014908 (PSAF)
 2261.51 2141.45 2088.86 2282.46 978.35 988.77 1033.1 1234.85 1485.28 1576.91 1427.67 1577.96 1062.79 617.96 562.9 907.96 916.32 512.25 857.13 1189.02 1175.29 1103.86 165.82 1627.2 1623.76 1705.55 1590.54 2044.71 2370.06 2073.25 1456.41
1322.92 1245.03 1204.58 1402.46 629.61 392.2 1082.69 1152.85 1554.8 1271.15 1427.39 1659.47 919.38 355.63 288.08 622.9 849.96 365.68 759.06 906.24 997.69 868.5 73.62 1075.72 1199.45 1177.41 1296.92 965.94 1302.11 1543.81 1150.57
Bra018144 (CAB4)
 8363.46 6772.02 6885.77 7622.11 4981.16 4956.8 7151.47 7482.39 8829.65 6940.15 7832.17 7775.41 5124.53 4112.9 3255.52 4836.49 5504.09 2727.42 5750.02 5631.79 5917.05 5563.91 1032.63 7235.86 7271.9 6884.83 6829.88 9340.72 10495.03 8949.12 6567.19
3546.68 4672.15 3319.07 3143.12 2606.82 2343.65 2373.67 2060.95 4413.58 2801.98 4223.79 3847.44 1972.97 2103.86 1399.87 2100.63 2338.42 1533.97 2827.03 2452.73 2533.16 2945.46 344.68 3992.85 4079.46 3837.98 3827.76 3654.47 6194.77 4585.91 3971.89
Bra018955 (PSI-H)
 2007.75 1663.63 1664.53 1720.69 1223.01 1215.3 1320.39 1376.37 1639.51 1763.56 2164.82 1528.47 974.18 1119.51 857.26 1048.57 1186.19 1078.17 1631.95 1311.54 1331.3 1539.06 336.24 1824.4 1835.07 1690.87 1659.15 2316.28 2506.77 2179.53 1681.22
Bra021327 (TLP18.3)
 744.84 686.83 651.56 620.45 538.22 509.7 665.41 671.11 780.58 754.54 785.26 756.09 488.33 369.02 349.89 568.04 568.35 264.95 578.72 659.24 640.7 617.59 174.16 760.01 769.52 737.18 797.69 783.35 897.77 934.71 890.99
Bra021649 (PSBW)
 3622.44 3234.28 3503.33 3500.71 2858.56 2437.49 2835.87 3266.23 3490.79 2785.7 3109.82 2751.25 1980.73 2085.19 1550.27 2301.25 2076.65 1050.5 2175.06 2296.3 2335.9 2629.02 572.24 2763.24 2848.05 2692.11 2741.24 3733.95 4562.29 3835.05 2840.71
Bra021909 (DEG11)
 10517.2 5126.42 7876.27 3346.49 4795.42 2580.81 8668.16 7562.07 12613.53 5910.3 7956.56 5668.98 4123.23 4379.54 3694.38 2819.83 4879.39 2308.87 3070.98 6458.93 7067.59 5288.9 1340.52 9398.7 9229.0 9508.1 9395.26 11562.6 13702.7 14756.0 9790.68
Bra023176 (PSAF)
 3397.8 3252.58 3344.41 3238.54 2079.2 2341.58 2704.49 2876.84 3459.82 3053.73 3248.71 3233.9 2010.81 2020.82 1820.84 2391.46 2466.87 1259.04 2598.63 2611.93 2649.74 2423.74 547.48 3269.24 3234.69 3190.31 3196.95 3511.61 3853.56 3746.6 2836.09
Bra024261 (PSAN)
 1452.4 1249.96 1241.72 1495.53 794.48 877.37 1234.97 1322.17 1609.98 1317.5 1552.93 1408.37 1065.67 672.46 599.11 1115.81 1171.82 544.87 1130.24 1120.83 1202.01 1180.96 217.43 1434.85 1402.9 1336.23 1364.15 1441.77 1724.56 1666.03 1268.46
Bra025297 (DEG13)
 2964.39 2284.92 2640.03 3392.17 1414.88 989.71 2331.4 2600.67 2545.23 2093.51 1665.22 1942.77 976.84 774.02 637.05 963.48 1283.19 663.84 1729.6 1593.36 1593.81 1614.73 202.63 2874.14 2928.0 2976.96 2637.64 4171.51 4101.21 2841.64 1807.97
Bra026745 (CP24)
 2629.57 1985.19 1759.06 2500.55 1416.88 1246.83 2000.63 2026.3 2811.48 2131.33 2340.7 2713.96 1109.91 984.16 828.68 815.19 1273.61 652.02 1391.62 1262.91 1480.19 1352.97 220.37 2185.43 2217.62 2110.58 2195.74 3095.31 3395.49 3234.34 1985.84
Bra027188 (PSAH-1)
 1375.51 1432.28 1539.38 1496.55 837.79 702.15 932.0 1026.48 1153.63 1186.84 1326.19 1302.45 723.28 921.57 761.26 848.95 932.89 774.02 1237.89 1248.36 1198.88 1198.19 410.39 1439.09 1500.72 1446.6 1420.02 1371.68 1419.45 1345.25 1108.79
Bra028906 (LHCB4.1)
 2227.22 2052.37 2235.92 2271.58 1105.49 927.07 1408.01 1456.54 1997.39 1588.79 1791.29 1994.54 1082.36 588.93 491.3 914.68 1112.34 634.24 1366.1 1040.29 1144.18 1199.41 174.52 1943.14 2013.14 2106.9 2154.24 2235.39 2628.37 3069.78 2084.08
Bra029563 (PSBQ)
 5226.03 4777.3 4941.16 4556.1 3658.7 2964.02 3546.74 3668.02 4774.36 4009.18 4686.4 4554.25 2425.35 2187.25 1871.83 2636.96 2636.39 1954.33 3928.47 3195.69 3269.08 2975.46 630.77 4714.92 4674.69 4438.71 4630.68 5580.63 6424.05 6625.6 4909.89
Bra029732 (LHCB4.2)
 4720.87 4712.1 4797.56 4452.81 3060.02 3091.53 2871.32 2887.07 4861.39 3407.01 3963.47 3685.36 1933.91 2668.54 2159.08 2418.93 2624.91 1480.31 3489.98 2683.82 2879.07 2815.24 372.57 3307.48 3241.86 3252.0 3099.47 4138.68 4998.25 4342.47 3055.86
Bra030181 (CAB3)
 1400.6 1133.97 1364.79 1183.5 806.31 689.55 1100.55 1067.32 1863.91 1185.63 1389.05 1265.58 641.32 718.65 622.25 601.5 740.62 515.68 932.64 984.01 999.38 905.63 189.67 1308.56 1294.81 1305.48 1392.71 1373.65 1613.59 1756.76 1140.22
Bra030182 (CAB3)
 10829.74 9735.84 12142.3 12564.47 3434.64 3179.91 8866.32 7662.61 12988.2 10704.28 12848.43 11835.79 5869.06 2785.26 2122.4 5408.29 7068.44 2820.48 7359.97 7379.87 8395.0 8932.36 1142.14 11107.67 11621.43 12252.83 12200.03 12319.87 13507.0 23499.73 13974.6
Bra030660 (OE23)
 1659.79 1607.0 1460.99 1851.89 1024.86 945.59 1344.18 1564.68 1945.55 1876.17 1984.28 1586.53 1175.65 604.93 662.31 1137.11 1270.28 707.22 1695.58 1481.38 1305.05 1382.77 280.68 1626.04 1732.0 1692.03 1766.92 1569.04 1803.68 2020.17 1653.29
Bra030843 (PSAG)
 2522.06 2277.36 2528.98 2489.4 2051.79 1759.14 1985.98 1779.72 3075.79 2350.94 2551.59 2926.25 1707.43 1795.51 1644.01 1785.38 1961.33 1399.46 2373.54 2410.8 2167.11 2269.25 601.37 2463.33 2520.27 2462.92 2458.79 2397.35 2889.44 3143.8 2436.02
Bra031427 (LHCA3)
 4620.9 3673.54 3431.61 3824.7 3431.12 3145.01 3397.16 3105.8 5298.38 3947.56 4415.45 4594.8 2331.0 2427.75 2266.72 2277.8 2640.9 1773.14 3408.04 3296.84 3331.25 3227.75 601.15 3987.43 3948.88 3801.04 3999.52 4951.25 6097.1 5380.41 3874.52
Bra031813 (OEE1)
 1760.79 1782.25 1743.39 1546.01 1041.07 1138.72 1711.13 1825.44 1631.6 1632.94 1768.2 1842.72 1227.44 946.96 803.84 1259.59 1342.99 867.99 1490.98 1539.68 1469.18 1383.19 296.23 1802.99 1883.44 1901.98 1978.2 1821.45 1825.37 2102.01 1997.24
Bra033802 (PTAC16)
 598.39 533.8 533.76 546.06 359.47 362.47 488.52 453.84 667.3 551.76 633.15 615.39 344.13 237.77 207.79 416.36 445.81 204.89 448.64 449.7 430.17 433.32 71.74 477.32 497.3 463.18 492.67 581.48 781.2 693.69 614.92
Bra034911 (PSAL)
 3229.27 3121.88 3242.96 3510.73 2069.99 2185.02 2680.81 2565.88 3428.23 3149.8 3597.13 3668.52 1864.68 1897.78 1595.54 2030.72 2026.9 1406.59 2882.76 2748.37 2735.66 2585.07 626.28 4166.63 4153.92 3942.82 4154.91 4577.28 5129.4 4944.55 3143.72
Bra036240 (PSAD1)
 4294.73 3794.95 4143.19 4413.59 3099.81 3010.83 3159.31 3176.42 5230.68 3936.84 4609.27 4471.29 2439.24 2649.54 2210.91 2375.69 2708.64 1996.88 3846.98 3331.2 3529.76 3668.24 570.51 4090.4 4097.55 3983.52 4211.22 4919.7 5765.3 5006.52 3431.65
Bra036948 (CH1)
 301.48 291.5 356.68 350.57 153.26 196.93 224.15 225.54 251.89 212.74 228.02 224.16 146.89 156.78 144.47 182.65 176.81 119.55 206.39 184.71 186.87 193.89 69.27 221.06 232.21 232.93 218.84 309.02 314.93 266.37 198.73
Bra037104 (PSAG)
 2764.99 2568.77 2916.07 2626.97 1842.72 1740.7 2499.36 2530.33 3373.4 3007.78 3306.66 3325.85 2115.31 1721.71 1510.52 2231.15 2343.14 1574.22 2643.2 2731.2 2755.85 2644.39 653.84 3028.94 3144.15 3199.21 3145.83 3139.47 3398.41 3498.28 3039.22
Bra037164 (OEE1)
 2304.91 2472.79 1448.63 1487.87 1260.86 868.69 1340.47 1118.7 1777.72 1309.2 1788.49 1438.71 838.95 676.34 585.37 984.76 804.87 544.05 1207.86 1024.2 1123.45 1071.19 322.6 2298.3 2388.57 2383.54 2441.2 2432.2 2600.99 2777.14 2250.15
Bra037913 (LHCB5)
 7858.24 7147.95 7036.2 8114.72 5127.8 6012.45 7598.47 7236.31 8143.57 7142.08 8162.58 8067.33 4904.17 5315.19 4674.44 5987.28 5890.74 3112.42 6875.39 6524.89 6587.05 6529.17 1511.97 7958.15 8217.67 7931.21 8042.29 9352.78 9395.69 8579.18 6836.3
Bra038011 (PSAG)
 1605.68 1312.4 1627.53 1555.19 830.54 815.4 1002.97 1092.07 1530.06 1299.27 1434.9 1355.54 1161.62 681.43 527.33 968.79 1153.21 559.85 1024.3 1114.19 1225.4 1132.77 207.23 1435.32 1519.31 1720.18 1552.92 1574.36 1857.69 1824.46 1403.81
Bra038863 (OEC33)
 1736.61 1647.33 1647.03 1525.22 1054.05 946.87 1123.49 1122.96 1852.54 1460.07 1644.66 1596.72 964.9 804.39 646.17 1151.82 1159.54 592.26 1361.28 1274.5 1269.7 1313.57 227.89 1508.95 1582.74 1447.26 1538.29 1595.12 2305.0 2147.13 1722.33
Bra039070 (DEG13)
 5411.69 4962.75 4863.97 5060.22 3476.64 3802.35 4517.38 4369.03 4777.3 3711.11 4604.61 4235.74 3104.45 4325.56 2845.42 3440.43 3519.53 2033.31 4232.26 3553.38 3880.68 3283.28 1382.58 4791.22 4802.79 4739.43 4205.31 5504.76 5520.9 4560.57 3361.6
Bra039676 (MPK18)
 27.82 18.51 16.78 22.85 12.26 14.06 16.35 27.18 18.06 15.99 22.48 21.9 12.77 9.54 13.1 9.05 12.66 10.34 12.87 14.35 17.09 19.55 16.19 25.85 29.04 31.59 31.44 29.52 26.99 32.63 24.22
Bra040482 (PSAP)
 3005.26 2448.36 2560.34 2680.77 1749.25 1615.05 2256.18 2422.14 2906.23 2584.01 2848.73 3230.83 1434.02 1005.22 882.43 1672.55 1777.51 787.42 1857.61 1971.83 1936.12 2169.64 186.22 2254.76 2338.9 2084.6 2481.33 2331.43 2951.65 3488.32 2615.02

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)