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Heatmap: Cluster_43 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000491 (LBD11)
 - - - - - - - - - - 1.16 - 1.77 -0.36 - - - 1.69 - - - - 4.42 - - - - - - - -
Bra001475 (ASML2)
 - - - - -0.45 -1.58 -0.68 - - - -1.72 - 2.13 -0.2 - - - 2.42 - - - - 4.2 - - - - - - - -
Bra001947 (BKN3)
 - - - - - - - - - - - - - - - - - 2.53 - - - - 4.66 - - - - - - - -
Bra002242 (MSL9)
 - - - - - - - - - - 2.66 - - - - - - - - - - - 4.62 - - - - - - - -
Bra002560 (DVL18)
 - - - - - - - 0.54 1.23 - - - - - - - - 2.34 - - - - 4.47 - - - - - - - -
- - - - - - - - - - - 1.0 1.23 1.38 - 0.3 - 1.56 - - 0.94 - 4.17 - - - - - - - -
Bra004042 (AE7)
 - - - - - 0.49 - - - - - - -0.22 - - - - 2.43 - - - 0.41 4.46 - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - -
Bra006417 (TFL2)
 - - 1.25 - 0.12 -0.42 -1.58 -1.44 - - -0.37 - 1.95 -1.1 - - - 0.5 - 0.2 - - 3.9 - - - - 0.5 -1.18 0.26 -1.16
- - - - - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - -
- 0.11 - - - - - - - - - - - - - - - 2.95 - - - - 4.3 0.68 - - - - - -0.23 -
- - - - - - - - - - - - - - - - - - - - - - 4.45 - - - 2.45 - - 0.85 0.86
Bra010276 (HTT1)
 - -2.4 -0.37 -0.6 -2.47 -0.59 -3.87 -2.2 -2.7 - -1.39 -2.6 0.46 -0.44 0.84 -0.94 -0.8 1.22 -1.57 -0.46 -1.5 -1.64 3.77 -1.02 0.57 - -0.49 -1.13 -0.21 -1.98 -0.72
Bra011464 (AtCAPE3)
 - - - - - - - - - - - - - - - - - 2.37 - - - - 4.69 - - - - - - - -
- - - - - - - - - - - 1.53 - - - - - 0.44 - - - - 4.65 - - - 0.68 - - - -
- - - - - - - -2.32 0.83 - - -0.96 -1.92 - - - - - -2.17 - -2.17 0.46 4.64 - - -0.18 - - - -0.6 -
- - - - - - - - - - - - 1.34 - - - - 2.35 - - - - 4.47 - - - - - - - 0.27
Bra015479 (TCH2)
 - 0.01 -1.4 - 0.49 0.61 - -2.0 - - -1.4 - -0.33 - 0.8 - - -2.22 -0.81 - - - 4.18 -1.3 -2.12 - - 0.96 -1.12 -2.13 0.45
- -0.43 -0.58 - 1.08 1.23 - - -0.89 - -0.84 -1.66 - - -0.43 - - - 0.5 -0.06 -0.2 -1.85 3.69 -0.22 1.11 - -0.16 0.48 -1.7 -1.8 -0.66
Bra015898 (MIF1)
 - - - - - - - - - - - - -0.01 - - - - 3.06 - - - - 4.44 - - - - - - - -
Bra017849 (VQ29)
 - - - - - - 1.55 - - - - - - - - - - - - - - - 4.81 - - - - - - - -
- - - - - - - - - - - - 0.11 - - - - -0.8 - - - - 4.76 -1.04 - - - 0.77 - - -
1.26 - -1.89 - - -1.89 - - - - - - - - -0.12 - - -1.98 - -0.87 -2.01 -1.06 4.32 - 0.94 - - 0.35 -0.63 -0.78 0.31
Bra020228 (RAX1)
 - - - - - - - - - - - - 2.43 - - - -0.96 1.7 - - - - 4.41 - - - - - - - -0.89
Bra020937 (GTB1)
 - - - - - - - - - - - - 2.06 - 1.05 - - - - - - - 4.63 - - - - - - - -
Bra021179 (JAL34)
 - - - - - - - - - - - - 1.84 - - - - 0.71 - - - - 4.69 - - - - - - - -
Bra021775 (AthCYSTM6)
 - -0.61 - 0.94 -1.98 -0.55 -0.79 -0.33 - -2.15 - - 1.64 -1.64 - - - 1.77 - - - - 4.03 -0.95 - - -0.36 - - -0.81 -0.18
Bra021824 (RLP23)
 -1.83 - - - - -2.29 - - 0.84 - -0.8 - -2.16 - - 0.2 0.23 0.95 0.78 0.06 0.56 1.13 3.94 -0.39 - - -1.22 - - -0.51 -
Bra022705 (AtDOB11)
 - - - - - - - - - - - - - - - - - 2.07 - - - - 4.64 - - - - - - -0.67 0.32
Bra023505 (WRKY72)
 - - - - - - - - - - - - 2.42 - - - - - - - - - 4.68 - - - - - - - -
Bra023586 (NDB4)
 - - - -0.68 - - 0.22 - - - - - -0.93 - 0.67 - 1.26 1.2 - - -1.07 - 4.42 - - -0.75 - - - - -
Bra023748 (TDR1)
 - - 0.05 - - - - - - - - - - - - - - - - - - - 4.91 - - - - - - - -
- - - - 1.51 - - - - - - - 1.58 - - - 1.55 1.37 - - - - 4.3 - - - - - - - -
Bra025795 (SK3)
 -0.65 - -3.21 -1.65 1.34 -2.36 -1.87 -2.09 -1.12 -0.18 -1.35 -1.8 0.19 -0.92 -0.27 -1.58 -1.9 1.77 -0.92 -3.12 -1.79 -1.96 3.44 -0.4 -0.66 -1.09 -1.01 -1.28 -0.17 -0.03 0.57
Bra025962 (TN2)
 -0.61 0.38 - - - - - - - - - - - - - 1.18 -0.97 2.52 - - - 0.42 4.22 - - - - -0.78 - - -
-0.06 -0.25 -0.34 -0.91 0.25 0.37 -0.96 -1.43 -0.62 -1.45 -1.14 -0.95 -1.36 -0.0 -0.02 -1.23 -1.42 0.86 -0.34 -1.09 -1.31 -1.19 3.16 -0.37 -0.48 -0.72 -0.55 -0.33 -0.08 -0.33 0.2
Bra026805 (KNATM)
 - - - - -1.06 -1.34 -2.47 - -2.23 - -3.33 -1.1 2.35 1.01 -0.59 -2.02 - 1.93 -1.37 - - - 3.96 -3.45 - - -3.33 -0.86 -1.26 -2.4 -
- -0.57 -1.07 -2.47 -0.27 -1.41 -3.85 -3.4 -1.08 -0.95 -1.19 -0.7 0.91 -0.73 -1.89 -1.14 -0.96 1.5 - -0.09 -1.69 -0.53 3.96 -4.64 -4.54 0.42 - -3.4 -1.93 -4.53 -1.36
- - - - - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - -
- - - - 0.88 -1.06 -2.08 - - -2.08 - - - -0.9 -0.13 -1.75 -1.96 2.44 - - - - 4.22 - - - - 0.29 -0.24 - -
Bra031715 (ZFP5)
 - - - - - - - - - - - - 2.09 - - - - - - - - - 4.74 - - - - - - - -
- - - - - - - - - - - - 2.3 - - - - - - - - - 4.71 - - - - - - - -
0.24 - - 0.31 - -1.7 -1.21 - - 0.41 -1.05 -1.68 0.3 - - - - - - - -2.65 -2.7 4.14 0.45 -0.53 -0.85 0.28 0.15 -0.5 -0.58 -2.55
- - -2.2 - -1.18 -1.2 -1.45 0.13 -3.1 - -2.13 - 1.49 -1.87 -2.99 -0.69 -1.01 1.05 -3.28 - -0.13 - 3.66 0.03 0.42 -0.86 0.1 -0.38 - 0.26 1.07
-2.5 - -3.77 -3.31 -2.29 -0.67 -1.96 -5.95 -0.27 -0.1 -0.82 -0.97 1.68 -0.22 0.15 -1.2 -1.38 1.73 0.12 -1.28 -0.61 -1.12 3.5 -0.62 -0.56 -1.51 -0.95 -0.98 -0.89 -3.5 -2.5
Bra035948 (COBL5)
 - - - - - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - -
- - - - - - - - - 2.08 - - - - - - - - - - - - 4.74 - - - - - - - -
Bra036939 (AAP5)
 -0.7 - - - - - - - -1.23 - -1.23 - 1.72 - -0.76 - - 2.67 - - -1.01 - 4.09 - - - - -0.8 -0.79 -0.86 -
Bra037568 (PUB29)
 -3.59 -2.21 -2.98 -3.99 -0.31 -0.32 0.01 -0.45 -1.69 -0.97 -1.01 -0.12 0.88 -0.97 0.61 0.22 -0.54 -0.3 0.19 -0.59 -1.11 -0.15 3.3 -0.2 -1.1 -0.71 -0.47 -0.27 -0.07 -1.55 -0.87
- - - -1.5 - - - - - - - - - - -0.73 - - - - - - - 4.55 -0.3 - 0.86 - - - 0.66 1.28
Bra038474 (CYS4)
 - -2.83 -0.25 - -1.91 - -3.23 - - - - -1.89 0.33 -1.1 -3.58 -2.04 -2.93 0.82 - - -2.87 - 4.64 - - -2.94 - -4.02 - -2.46 -4.05
- - - - - - - - - - - - - - - - - - - - - - 4.65 - - 2.57 - - - - -
- - - - - - - - - - - - - - - - - - - - - - 4.95 - - - - - - - -
- - - - - - - - - - - - 2.5 - - - - - - - - - 4.66 - - - - - - - -
Bra040831 (PBD1)
 - - - - - - - - - - - - - - - - - - - - - - 4.74 - 2.09 - - - - - -
Bra040856 (bHLH94)
 - -0.44 - - - - - -1.79 -0.93 - - - 0.79 -0.43 -1.29 - - 2.52 -0.84 - - - 4.18 -0.18 - - - - - 0.38 -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.