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Heatmap: Cluster_125 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000060 (AGT3)
 -0.56 -1.55 -0.52 -1.11 2.17 0.92 -1.76 -2.65 1.05 -1.17 -0.63 -0.75 -2.19 0.77 0.74 -0.97 -1.0 -1.34 -1.13 -0.33 -0.99 -1.15 0.0 -0.89 -0.87 -0.55 -0.98 1.05 2.17 -0.53 -1.15
-0.03 -0.22 0.11 -0.66 1.2 0.66 -0.45 -0.49 0.2 0.02 0.04 0.02 -0.48 0.22 0.29 -0.17 -0.43 0.35 0.12 -0.2 -0.29 -0.16 -0.61 -0.29 -0.34 -0.37 -0.22 0.34 0.55 -0.17 -0.47
Bra000416 (ABIL1)
 -0.15 -0.45 -0.32 -0.43 0.88 0.55 -0.21 -0.87 0.25 0.15 0.09 0.06 -0.23 0.96 0.6 0.14 -0.39 -0.18 0.57 0.02 -0.02 -0.26 -1.88 -0.16 -0.15 -0.14 -0.45 -0.12 -0.17 -0.1 -0.21
Bra000456 (CHB1)
 0.1 -0.09 0.13 -0.03 0.78 0.42 -0.45 -0.54 0.07 -0.17 -0.07 0.06 0.09 0.37 0.2 -0.03 -0.06 0.24 -0.27 0.05 -0.17 -0.27 -0.21 -0.16 -0.13 -0.38 -0.29 0.06 0.2 -0.12 -0.12
0.6 0.35 -0.03 -0.28 1.17 0.15 -0.35 -0.15 0.32 -0.08 -0.07 0.06 -0.11 0.53 0.31 -0.0 -0.51 1.04 0.36 -0.23 -0.4 -0.33 -0.47 -0.53 -0.59 -1.44 -0.89 0.03 -0.32 -0.44 -0.84
Bra004456 (PFG1)
 -3.39 -2.92 -3.95 -2.31 1.99 1.12 -1.76 -2.82 -1.09 -2.16 -1.21 -1.65 0.16 1.29 1.97 -0.51 -0.74 1.72 0.83 -1.07 -1.0 -1.91 -1.17 -1.62 -1.56 -1.35 -0.75 0.76 0.36 0.31 0.11
Bra006085 (KNAT4)
 0.21 0.34 0.34 -0.34 1.7 0.55 -0.97 -1.05 0.21 0.13 -0.22 -0.35 -0.93 0.4 1.11 -0.35 -0.52 -0.75 -0.53 -0.27 -0.61 -0.47 0.03 -0.5 -0.72 -1.09 -0.51 0.14 0.44 0.31 -0.47
-2.51 -3.72 -3.13 -6.95 3.57 1.83 -2.14 -3.26 -1.75 -2.23 -3.33 -3.74 -2.04 0.63 1.19 -1.98 -2.79 -0.41 -0.91 -2.36 -4.01 -4.19 -1.23 -0.62 -1.78 -2.62 -3.32 1.45 1.03 -0.29 -0.14
-0.62 -2.79 -3.09 -1.64 2.22 1.1 -0.53 -0.51 0.66 -0.48 -0.39 -0.5 -1.07 1.1 0.97 -0.66 -0.66 -1.54 -0.93 -0.69 -0.83 -0.97 -0.95 -0.41 -0.56 -0.22 -1.03 1.41 1.2 -0.33 -1.52
Bra006908 (SEX4)
 -0.37 -0.73 -1.34 -1.59 2.13 0.96 -1.36 -1.16 -0.92 -0.72 -0.97 -1.18 -1.84 0.97 0.98 -0.79 -1.43 0.83 0.56 -0.41 -1.18 -1.28 -0.88 -0.33 -0.63 -0.92 -0.68 0.76 0.62 1.05 0.26
Bra007343 (ExAD)
 0.14 -0.42 0.16 -0.49 2.04 0.87 -1.24 -0.82 -0.39 -0.56 -0.7 -0.83 -0.53 0.7 0.5 -0.63 -1.04 0.04 -0.47 -0.92 -0.91 -0.82 0.44 -0.16 -0.09 -0.14 -0.31 0.52 0.72 -0.21 -0.63
Bra007646 (NGA2)
 -0.16 -0.89 -0.99 -0.89 1.18 0.92 -0.22 -0.07 0.43 -0.17 -0.31 -0.13 -0.58 0.84 0.62 -0.55 -0.17 0.2 -0.45 -0.39 -0.23 -0.37 -0.51 -0.48 -0.28 -0.55 -0.43 0.72 0.59 0.01 -0.12
Bra008557 (CTPS3)
 0.47 0.3 -0.01 0.04 0.52 0.23 -0.32 -0.29 0.36 -0.15 -0.02 0.1 -0.5 0.6 0.43 -0.21 -0.59 0.2 -0.03 -0.17 -0.22 -0.26 -1.12 -0.28 -0.22 -0.38 -0.36 0.1 0.34 -0.05 0.11
Bra008612 (GLN1;4)
 0.47 -0.92 -0.79 -0.41 2.19 1.58 -2.09 -0.89 0.54 -0.83 -0.26 -0.89 -3.46 -0.87 0.61 -0.92 -2.13 -5.74 -1.41 -0.57 -1.17 -1.1 -0.76 -0.4 -0.65 -0.55 -0.77 1.87 1.55 -0.06 -1.6
Bra008705 (MYB16)
 -0.8 -1.46 -0.81 -1.48 1.06 0.69 0.04 -0.16 0.39 0.02 0.24 0.19 -0.11 0.9 0.51 0.4 0.21 -0.07 0.32 0.44 0.04 0.3 -0.76 -0.12 -0.3 -2.17 -0.33 -0.33 -0.26 -0.84 -0.29
Bra009326 (ATAIH)
 -0.08 -0.23 -0.28 -0.05 1.7 0.8 -1.14 -0.84 0.16 0.1 -0.27 -0.08 -1.94 0.42 0.68 -0.73 -1.34 -2.48 -1.21 -1.17 -0.87 -0.54 -0.94 -0.09 -0.17 -0.47 -0.26 0.99 1.27 0.9 -0.35
Bra010738 (FP6)
 0.52 0.3 0.18 -0.3 1.64 0.35 -1.14 -0.84 0.29 -0.39 -0.34 -0.45 -0.13 0.56 0.79 -0.69 -0.76 0.69 -0.28 -0.9 -1.14 -0.68 -0.87 -0.25 -0.34 -0.37 -0.36 0.25 0.14 0.02 0.09
Bra011489 (LEJ1)
 0.35 -0.15 -3.7 -2.87 2.92 1.42 -1.84 -1.48 -1.07 -1.15 -1.51 -0.9 -2.04 1.31 1.88 -1.26 -2.52 -0.43 -0.14 -1.66 -1.73 -1.34 -2.13 -1.79 -2.49 -2.84 -2.23 1.28 0.38 -0.6 -0.24
0.45 0.15 -0.28 -1.25 2.24 1.2 -0.55 -1.62 0.52 -0.61 -1.58 0.22 -2.31 0.76 0.7 -1.23 -1.0 -2.2 0.31 -1.21 -1.14 -1.74 -0.44 0.46 -0.28 -2.62 -1.02 0.66 0.52 0.25 -0.34
0.68 -0.48 -3.79 -2.67 3.05 1.68 -2.14 -2.44 -0.1 -2.15 -1.32 -0.53 -1.15 0.85 0.84 -2.32 -2.46 1.51 0.54 -0.16 -2.69 -0.3 0.17 -2.9 -2.81 -2.6 -2.74 -0.75 -1.46 -1.76 -0.45
Bra014307 (MBP2)
 0.21 -0.06 0.5 -0.5 1.16 0.67 -0.16 -0.21 -0.46 -0.1 -0.36 0.52 -0.91 -0.46 0.94 0.05 0.03 0.7 0.06 -0.14 -0.45 -0.29 -2.17 -0.61 -0.53 -1.0 -0.69 -0.71 -0.17 0.43 0.49
Bra014309 (MBP2)
 0.79 0.09 1.12 -0.16 1.87 1.25 0.0 -0.42 -0.48 0.02 -0.23 0.56 -2.23 -0.47 1.06 0.36 0.25 0.34 0.1 -0.71 -0.22 -0.41 -4.21 -2.05 -1.29 -1.72 -1.59 -1.77 -1.13 -0.99 -0.63
Bra016246 (CLE26)
 0.63 -0.11 -0.16 -0.18 1.48 0.51 -0.88 -0.79 0.07 -0.07 0.0 -0.25 -1.24 0.87 0.77 0.11 -0.17 0.12 -0.13 -0.23 -0.41 -0.86 -1.46 -0.28 -0.1 -0.13 -0.36 0.03 0.15 -0.15 -0.64
Bra016747 (NRT2.5)
 -1.9 - -1.51 - 3.37 2.18 -2.13 -4.33 -0.25 -0.88 -0.64 -2.35 -0.7 0.61 2.4 -2.06 -3.2 -3.4 - -0.92 -4.43 -0.12 -1.31 -2.1 - -2.04 -2.35 0.03 -0.66 -0.71 -1.75
Bra016871 (CuAO-zeta)
 0.6 0.25 -0.07 -0.5 1.63 0.28 -1.11 -1.22 0.29 -0.15 -0.27 -0.58 -0.62 0.95 1.04 -0.48 -0.5 0.14 -0.48 -0.52 -0.97 -0.74 -0.25 -0.82 -0.76 -0.61 -0.44 0.12 0.55 0.33 -0.1
0.6 -0.83 -0.8 -2.06 1.81 1.03 -0.76 -0.77 0.31 0.04 -0.03 -0.48 -0.8 0.59 1.33 0.07 -0.41 -1.31 0.26 0.04 -0.59 -0.37 -0.04 -1.18 -0.89 -0.8 -0.56 -0.5 0.61 -0.35 -0.45
Bra018643 (AXS2)
 0.11 0.12 -0.13 -0.18 0.57 0.2 -0.31 -0.32 0.05 0.07 0.15 0.11 -0.17 0.14 0.46 0.17 -0.18 0.62 0.16 0.01 -0.38 -0.2 -0.64 -0.17 -0.17 -0.25 -0.22 -0.06 -0.1 -0.02 -0.25
0.55 0.15 -0.1 -0.85 1.21 0.45 -0.45 -0.8 0.11 0.09 0.24 -0.12 -0.33 0.17 0.71 0.3 -0.07 0.33 0.27 -0.23 -0.08 -0.13 -0.35 -0.47 -0.25 -0.58 -0.42 -0.51 -0.2 -0.43 -0.52
Bra021829 (PKT3)
 0.43 0.14 0.19 -0.29 2.33 1.29 -0.76 -1.6 0.13 -1.54 -2.74 -0.33 -0.83 1.36 0.74 -1.85 -1.55 -0.35 -1.45 -1.4 -1.23 -1.69 0.29 0.38 -0.38 -0.78 -0.11 0.35 -0.14 -0.84 -0.71
0.07 -0.14 0.33 -0.31 1.04 0.88 -1.04 -0.46 -0.4 -0.48 -0.59 -0.67 -0.68 0.82 0.59 -0.6 -0.76 0.24 -0.13 -0.74 -0.16 -0.56 0.73 -0.03 0.06 -0.14 0.2 0.11 0.11 -0.12 -0.21
Bra022648 (PMEPCRF)
 -0.44 -0.45 -0.32 -0.6 1.28 0.49 -0.46 -0.61 0.08 0.21 -0.02 -0.25 -1.03 0.81 0.66 -0.17 0.07 0.33 0.31 -0.55 -0.42 -0.37 -0.53 -0.26 -0.06 0.08 -0.51 0.2 0.1 0.22 -0.46
Bra022882 (VCC)
 -0.5 -2.78 -0.52 -2.1 2.13 0.84 -2.6 -1.84 -0.35 -0.43 -0.34 -1.16 0.41 0.73 1.05 -0.39 -0.79 0.06 0.22 -0.05 -0.44 -0.45 0.73 -0.36 -0.41 -1.7 -0.81 0.22 -0.18 0.89 -0.31
0.34 -0.31 0.28 -0.36 1.1 0.34 -0.92 -0.93 0.36 -0.02 0.15 0.18 -0.47 0.66 0.49 -0.33 -0.44 -0.06 0.23 -0.44 -0.34 -0.29 -1.55 -0.47 -0.52 -0.48 -0.44 0.39 0.65 0.25 -0.04
-0.61 0.51 -0.56 -1.11 1.37 0.69 -2.68 -2.61 0.64 -0.81 -0.36 -0.72 -2.39 1.73 1.25 -1.61 -1.0 -0.8 -1.49 -1.33 -1.11 -1.03 -0.2 -0.67 -0.5 -0.5 -0.1 0.87 1.54 0.6 -0.58
Bra024716 (UPS5)
 0.48 -0.97 -1.17 -1.46 1.69 0.88 -2.08 -1.69 0.48 -0.58 0.02 -0.54 -2.7 1.04 1.16 -1.58 -1.91 -4.37 -2.19 -0.84 -0.6 -0.51 -1.4 -0.2 -0.29 -1.04 -0.72 1.85 1.85 -0.09 -1.48
Bra024901 (GABP)
 0.5 1.15 0.13 0.44 2.91 1.22 -2.51 -1.3 -1.63 -1.44 -4.11 -2.51 - -0.07 0.87 -2.82 -1.11 -0.68 -3.23 0.21 -1.66 -1.54 1.56 -2.56 -2.83 -0.55 -3.03 0.73 -0.12 -0.86 -1.22
Bra028335 (CIL2)
 -0.39 -0.3 -0.41 -0.62 0.95 0.33 -0.45 -0.8 0.35 0.16 0.28 0.18 -0.19 0.74 0.48 0.09 -0.32 -0.32 0.11 0.19 0.1 0.0 -0.47 -0.15 -0.12 -0.14 -0.3 -0.07 0.03 -0.29 -0.26
-0.6 -0.97 -0.53 -2.04 1.81 0.58 -0.87 -1.21 0.39 -0.91 -0.16 -0.8 -1.02 1.29 0.99 -0.16 -0.06 1.26 0.13 0.27 -0.3 -0.46 -0.87 -0.18 -0.78 -1.05 -0.56 -0.08 0.02 -0.3 -0.63
-0.13 -0.52 0.5 -0.39 1.94 0.94 -0.61 -1.68 -0.17 -0.34 -0.16 -0.46 -0.52 0.42 0.45 0.2 -0.2 -0.07 -0.14 -0.59 -0.85 -0.72 0.5 -0.29 -0.45 -0.77 -0.6 0.12 0.15 0.05 -0.66
Bra031017 (MPK8)
 -0.21 -0.29 -0.13 -0.76 0.67 0.3 -0.46 -0.25 0.23 0.2 0.02 -0.2 -0.1 0.72 0.61 0.03 0.07 -0.04 -0.05 -0.03 -0.01 -0.0 -0.08 -0.11 -0.09 -0.36 -0.29 0.04 0.06 -0.16 -0.4
Bra031961 (MLK2)
 0.54 -0.11 0.19 0.22 0.98 0.35 -0.72 -0.41 0.37 -0.11 -0.2 -0.16 -1.07 0.76 0.51 -0.25 -0.37 0.38 0.01 -0.43 -0.28 -0.23 -1.55 -0.41 -0.51 -0.51 -0.16 0.12 0.41 -0.07 0.02
Bra032763 (ARPC4)
 0.25 0.18 0.11 -0.0 0.99 0.62 -0.51 -0.94 -0.08 -0.36 -0.37 -0.19 -0.23 0.45 0.51 -0.29 -0.42 -0.13 -0.15 -0.26 -0.27 -0.02 0.31 -0.09 -0.04 0.04 -0.12 -0.17 0.07 -0.01 -0.35
Bra033088 (KIN11)
 -0.26 -1.09 -1.2 -1.83 1.78 0.91 -0.31 -0.81 0.09 -0.46 0.05 -0.11 -0.72 0.72 1.17 -0.66 -1.56 0.92 0.52 -0.68 -1.04 -1.03 0.02 -0.23 -0.18 -0.95 -0.81 -0.02 0.33 0.05 0.05
Bra033241 (PRD3)
 0.42 0.79 0.2 0.03 2.09 0.91 -1.21 -0.88 0.48 -0.46 -0.2 -0.46 -0.34 0.58 0.97 -1.0 -0.56 -0.68 -0.52 -0.81 -0.81 -0.53 0.74 -1.22 -1.69 -1.33 -1.14 -0.02 -0.47 0.07 -1.57
Bra033567 (PLC1)
 0.46 -0.63 -0.91 -0.97 1.19 0.35 -0.37 -1.1 0.31 -0.08 0.1 -0.15 -2.07 1.12 0.81 0.31 0.02 -0.1 0.64 0.19 0.09 -0.16 -2.71 -0.1 -0.07 -0.09 -0.22 -0.3 -0.14 -0.23 -0.86
-0.11 -0.3 -0.2 -0.36 1.0 0.79 -0.29 -0.26 -0.01 -0.42 0.05 -0.29 -0.36 0.33 0.79 0.07 -0.12 -0.19 -0.23 -0.29 -0.3 -0.37 -0.24 -0.04 0.07 -0.32 -0.05 0.26 0.21 -0.14 -0.16
Bra038348 (PPRT1)
 -0.31 -0.05 0.36 -0.83 2.1 0.93 -1.08 -1.26 0.53 0.18 -0.09 -0.98 -0.0 0.6 0.5 -0.43 -0.04 0.16 0.5 0.08 -0.42 -0.32 0.52 -0.92 -1.67 -2.03 -0.98 -0.63 -0.48 -0.47 -1.33

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.