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Heatmap: Cluster_203 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra002495 (SUMM2)
 -0.94 -1.28 -0.74 -0.41 -0.21 0.71 -1.0 -2.64 0.28 -0.37 0.31 -1.65 0.93 0.7 1.48 1.0 0.77 1.32 0.2 0.38 0.24 -0.86 -0.3 -0.4 -1.38 -1.93 -2.07 -0.88 -2.36 -1.49 0.8
- - - - - - - - - 2.38 - - - - 1.08 3.23 2.68 1.3 - 2.44 - - - - - - - - - - -
0.37 - - - -0.25 -1.85 -0.79 -1.87 1.3 - -0.45 - 2.43 -1.09 1.07 1.06 1.11 -1.93 0.5 0.23 0.77 - -2.15 -0.66 0.2 -2.49 -1.89 -0.54 1.03 -0.76 1.03
Bra005474 (PUP2)
 -1.92 -3.54 - -0.17 0.42 0.98 -0.56 -1.98 0.53 -0.63 -0.14 0.5 0.26 -0.14 1.22 1.72 0.84 -1.9 -0.36 -0.13 0.85 -1.18 0.77 -1.21 -1.02 -1.21 -0.35 -0.45 -0.41 0.2 -0.16
Bra006704 (PUM19)
 -0.15 1.43 -1.54 0.02 -0.69 0.46 -0.24 -0.24 0.67 0.58 0.02 0.74 0.57 1.04 1.43 0.33 0.64 -2.86 -0.16 0.3 1.34 1.46 - - - - - - - - -
Bra006780 (ECT10)
 -1.87 -3.62 -1.38 -1.57 0.86 0.29 -0.78 -1.37 -0.47 -0.21 -0.06 -1.22 0.44 0.95 0.16 1.62 -0.16 0.92 -0.2 0.5 -0.64 -0.09 1.13 0.62 0.17 -0.87 -0.14 -0.56 -1.41 -1.06 -0.05
Bra007021 (CHX20)
 - - - - 2.97 2.88 - - - - - - - - - 3.09 - - - - - - 2.87 - - - - - - - -
-1.65 0.66 -1.14 -2.62 -1.47 0.79 -0.34 1.06 0.22 0.6 -0.03 -2.0 0.76 0.02 1.66 1.06 -0.7 -2.62 -2.04 0.96 1.91 1.32 -1.69 -2.06 -3.2 -2.34 -1.45 -4.57 -1.3 -1.59 -1.23
- - - - - - - - 3.8 - - - - - - 4.09 - - - - - - - - - - - - - - -
Bra008225 (PDF1.2c)
 - - - - - - - - - - - - 3.92 - - 3.98 - - - - - - - - - - - - - - -
Bra008504 (RGI1)
 - - - - - - - -0.26 2.8 - - - 2.86 - -5.88 3.02 - - 2.63 - 0.7 - - - - - - - - - -
Bra010576 (LSU)
 - 2.0 - - 0.52 0.5 0.48 1.54 - - - - 0.77 - 2.37 2.78 0.76 - - - 1.53 - 0.59 - - - - - - - -
-0.17 -2.49 0.0 -0.16 1.21 -0.77 0.36 0.29 -1.05 0.49 0.42 - - 1.21 -0.92 1.49 -0.55 -0.7 -1.2 - 0.24 - -1.64 0.53 -0.05 1.63 -1.1 -1.06 0.65 1.1 -1.62
-0.64 -0.46 -0.64 -0.34 -0.0 -0.24 -0.27 0.04 -0.43 -0.08 -0.16 0.34 0.2 0.36 0.18 0.81 0.03 0.18 -0.25 -0.35 -0.21 -0.01 0.89 0.29 0.19 -0.08 0.1 -0.23 -0.55 -0.23 0.09
Bra017548 (uL18-L7)
 -1.22 -1.26 -0.08 - -1.38 - -0.66 -0.69 0.68 -1.61 - 0.25 1.06 2.3 0.74 -1.31 -0.32 2.22 - - 0.49 -0.04 -1.52 -1.57 1.58 -1.15 -0.42 -0.25 -1.42 0.09 -1.33
- - - - - - - - - 0.97 - - - - - 3.44 - - - - - - 2.47 - - 2.43 - - - 2.41 0.93
Bra019481 (SRF3)
 -0.02 -2.84 -1.91 -4.83 -0.68 2.02 -4.73 1.79 - 0.99 0.75 - -6.06 -5.91 - 1.24 0.84 1.39 2.12 - 2.72 - - - -5.27 - - - - - -
- - - - 0.06 - 0.07 -2.19 2.05 -1.08 -1.99 0.15 1.47 1.07 -0.27 1.15 - -0.33 0.09 1.82 -1.09 0.9 - -2.2 1.56 -0.09 -2.09 -1.7 0.15 -0.35 -0.84
- - - - - - - - - - - - - - - 4.31 - - - - - - 3.49 - - - - - - - -
Bra021279 (GORK)
 1.23 1.29 0.68 - - - - - - - -0.31 0.18 3.69 - -0.0 - - 2.36 - - -0.31 - -0.18 - - -0.23 - - - - 0.09
Bra022120 (ftsh7)
 -0.06 -1.84 -1.51 -0.19 1.07 1.51 0.11 -3.24 0.73 -0.04 0.11 -3.33 -0.02 2.12 2.34 0.49 0.26 1.22 0.7 -1.17 -1.24 -0.35 - - - - - - - - -
Bra022121 (TPLATE)
 0.59 -1.53 1.16 -1.64 0.85 1.21 -0.29 -0.24 -1.47 -0.75 -0.31 -0.58 0.02 1.8 2.12 -0.53 0.12 0.89 1.02 -0.36 0.87 0.31 - - - - - -4.45 - - -
-0.01 -0.12 0.74 -1.1 0.63 -0.18 0.03 -0.0 0.31 -0.38 -0.58 1.02 1.19 1.49 1.86 -1.31 -0.66 1.54 0.43 -0.88 -0.28 0.66 -2.02 -3.41 - -4.89 - - - -4.69 -1.18
Bra023076 (RPL12-B)
 - - - - - - - - - - - - - - - 4.41 - - - - - - 3.29 - - - - - - - -
-0.68 - 0.22 0.32 0.05 -0.09 -1.32 -0.0 - 0.97 - - 0.72 -0.73 0.24 1.72 - - - - - -1.2 2.27 1.17 - 2.05 0.69 - - 0.65 0.12
Bra024517 (GSTF4)
 - - - - 0.25 - -1.99 - - 1.82 0.58 - -1.14 1.68 -0.27 1.96 - -0.89 -0.08 0.55 -0.55 -0.04 0.22 0.49 0.04 0.03 0.38 0.72 0.29 0.98 -0.32
Bra025274 (PLL18)
 - 1.01 -1.42 - -0.25 0.91 - 0.94 1.41 - -0.01 0.96 0.36 - 2.27 -1.15 -1.36 0.51 -0.65 - 2.22 -0.49 0.57 - -1.44 - - -0.18 -1.21 - -0.27
Bra025712 (TRM8a)
 - - - - - - - - - 1.41 0.4 1.86 - 3.71 - 3.37 - - - - - - - - - - - - - - -
Bra026454 (CCoAOMT7)
 - - - - - 3.21 - - - - - - 3.47 - - 3.41 - - - - - - - - - - - - - - -
Bra026922 (RPS5)
 -1.52 -2.33 -2.17 -2.48 -4.36 -1.34 -1.34 -3.45 1.1 0.04 0.14 - 1.91 0.25 0.81 1.53 1.66 1.45 0.5 0.49 1.14 -0.83 -1.72 -2.79 -0.53 - -2.66 -2.13 -1.87 -1.34 0.65
Bra028178 (ALBA1)
 - - - - - 2.88 2.81 - - - - - - - - 4.06 - - - - - - - - - - - - - - -
Bra028324 (TA1)
 2.43 0.43 - 1.28 - - - - 2.29 - 1.15 0.47 0.28 - 0.4 - - - - - - 2.44 - - - 2.05 - 0.27 - - -
Bra028428 (DDR1)
 - - - - - - - - - - - - 3.99 - - 2.88 - 2.94 - - - - - - - - - - - - -
- - 1.79 2.02 1.89 - - - - - 0.57 - - -0.24 0.15 3.63 - - 0.5 - - - 1.34 - - - - - - - -
Bra030927 (PPK1)
 -0.95 -0.83 -1.27 -1.0 1.19 0.49 0.38 0.57 -0.37 -0.71 -0.01 -0.4 -0.52 1.06 0.47 0.21 0.55 -1.01 0.41 0.05 -0.15 -0.19 0.49 0.14 0.15 -1.01 -0.45 -0.68 -0.01 -0.4 -0.42
- - -3.39 - 2.33 1.52 -3.64 -0.15 -1.06 0.77 0.31 0.12 -3.19 2.08 -0.44 1.38 -1.64 -0.13 -0.36 1.22 -1.44 -3.53 -0.51 -1.2 0.04 -0.56 -2.4 -1.55 0.29 -3.19 -1.62
-0.05 0.13 -0.48 -0.97 0.46 0.4 -1.75 1.16 1.12 0.2 -1.7 -0.26 1.61 0.91 1.89 -1.23 -4.45 1.56 0.49 -1.43 0.51 0.6 -0.83 -4.06 -3.61 -2.17 -5.52 -3.24 -5.32 -3.09 -5.24
- - - 0.25 - - - 1.2 2.67 -1.13 -0.11 - 1.93 -0.65 1.23 0.79 - 2.04 0.75 - - 2.15 - - - - - - - -1.03 -0.86
Bra032353 (BRF2)
 - - - 1.17 - 2.87 -0.4 -0.3 - - - - - 3.04 - 2.08 1.98 - - - - 1.8 - - - - - - - - -
Bra032685 (RDP)
 0.2 -4.27 -0.6 -2.75 -0.13 0.89 -0.01 -1.43 0.18 0.3 -0.23 -1.86 -0.06 1.65 1.47 0.48 0.63 1.41 1.45 0.07 1.26 -0.19 - - -0.79 - -2.81 - -1.28 -2.27 -0.99
Bra033159 (LACS5)
 - - - - 1.62 -1.69 - 0.36 0.33 0.67 -1.57 - -1.5 -0.31 -0.26 2.28 0.41 0.75 1.24 0.75 - 1.77 0.69 - 0.04 -0.08 - -1.41 0.58 - -1.34
1.83 - - - - - - - 3.62 - 3.1 - - - - - - - - - - - - - - - 1.85 1.59 - - -
Bra035751 (FIE)
 -0.28 -0.88 -0.02 -0.93 -1.55 -1.24 -1.39 0.83 1.59 0.65 0.44 0.25 -0.03 0.15 0.62 0.18 -3.23 1.43 0.95 -1.62 0.81 1.32 1.46 -3.07 -1.99 -3.11 -2.75 -2.81 -1.87 -2.79 -3.88
Bra036543 (SHN3)
 - - - - - - - - 1.86 - 0.79 - - 2.64 0.84 0.52 - -1.76 0.24 1.38 0.23 - - 0.23 2.0 0.59 0.87 0.5 -0.56 - -1.62
- - - - - - - - 3.23 1.06 0.85 1.06 - 1.14 1.24 2.22 1.15 - - - 1.08 - - - - - - - - 1.1 -
- - - - - - - 2.82 - - - - - - - 4.04 - - - - - - 2.91 - - - - - - - -
- - - - - - 3.11 - 3.3 - - - - - - 3.65 - - - - - - - - - - - - - - -
-2.83 -0.85 -3.4 0.5 1.03 0.35 -1.65 -0.01 -0.86 -1.58 -1.11 0.14 -1.29 0.92 -0.1 1.67 0.64 -0.51 -1.6 -0.68 0.06 0.51 0.28 -0.61 -0.46 0.95 -0.0 0.38 0.7 -0.09 -2.08
- - - - - - - - - - 1.69 - - - 2.18 3.07 - - 2.65 - - - - - - 2.25 - - - 1.93 -
Bra038812 (SEC1B)
 -0.75 - - - 0.13 1.72 0.07 1.76 0.23 1.43 - -0.28 -1.75 1.41 1.26 1.95 -0.78 -0.72 0.96 - 1.85 -0.04 - - - - - - - - -
Bra039015 (TMK3)
 - - - - - - - - - - - - - - - 4.03 - - - - - - 3.88 - - - - - - - -
Bra040231 (GolS9)
 - - - 2.82 - 2.8 - - - - - 3.18 - - - 2.99 - - - - - - - - - - - - - - -
- -0.43 -0.49 - 0.8 1.22 -0.87 - - -0.76 - - - 2.72 -0.58 2.44 1.93 -0.54 0.26 1.63 -0.74 - - -0.87 0.19 - - - - -0.72 -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.