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Heatmap: Cluster_177 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000562 (UNE11)
 - - 4.23 3.04 - - - - - - - - - - - - - - - - - - - - - 2.01 - - - - -
Bra001424 (PUB24)
 - 2.07 2.45 - -1.22 -2.87 - - -2.78 -1.36 - 0.13 - - - 0.83 0.13 -0.63 - - - 1.31 3.64 -1.39 - - - - - -1.69 -
Bra001890 (DMC1)
 - - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Bra001998 (PUB16)
 1.48 - 3.77 -5.61 - - - 0.67 - 2.51 - 0.82 - - -18.23 - - - - - 0.61 - - - - -13.39 -26.75 - - - 2.0
Bra002408 (NAC090)
 -0.66 1.64 1.9 -1.36 -2.4 -1.22 -3.7 - - -1.03 -3.5 -1.52 -3.3 -3.43 - -1.72 -0.77 -1.3 -2.39 - -1.18 -1.1 4.18 -2.61 - - - - -3.38 -0.81 -
1.93 0.35 4.15 - - - - - - 1.45 - - - - 1.22 0.18 - - - - - - 0.96 - - - - - - - -
Bra002905 (NHX3)
 - - 3.23 - 0.29 - - - - - - - - - - - - - - 2.41 - - 3.91 - - - - - - - -
- - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
1.9 2.23 3.24 0.34 - - - 0.82 - - - - - - - -1.11 -0.49 - - - -1.29 -1.37 -1.34 0.66 - - 0.68 - 1.44 0.89 -
Bra003613 (MC7)
 1.74 -0.12 3.1 0.44 0.56 -0.73 -1.8 -2.79 -0.5 -0.59 -1.37 -0.27 -1.76 -3.09 -2.3 -3.36 -1.4 -2.65 -2.77 -2.55 -4.07 -1.11 -0.07 -2.35 -0.19 1.36 0.47 -3.52 -0.71 0.6 0.54
Bra003635 (MBL1)
 0.66 1.21 3.07 0.68 -2.29 -4.72 -1.4 -0.66 -2.17 0.12 0.36 -1.35 -0.29 -4.69 -3.39 -1.24 -0.29 0.61 -1.91 -0.71 -1.59 -1.07 -0.43 -1.31 -1.51 1.46 -1.2 -2.5 -1.73 0.47 -0.13
1.87 2.26 3.81 1.0 -1.97 - -3.14 - - -2.96 - - -1.19 - - - - -1.36 - - - - 2.11 - - - -2.83 - - -1.28 -1.82
Bra005355 (GIK)
 - - 1.9 - -1.31 -0.44 -1.65 -1.14 1.44 -0.46 0.59 - 0.38 - - - - -0.47 0.07 - 1.37 -1.53 3.39 - -0.24 0.71 - 0.53 - - -
Bra005429 (RLP54)
 -1.54 1.02 4.0 0.47 -1.54 - - - -2.1 - - -3.13 - - - - - -4.58 - - - - 3.28 - - - -2.95 - - -0.61 -
- - 4.63 - - - - - - - - - - - - - - 2.65 - - - - - - - - - - - - -
Bra005852 (DREB2)
 1.1 2.55 3.62 2.21 - -2.05 -0.72 -1.19 -2.17 - -0.99 - - - -0.75 -1.86 - -0.12 - - -2.15 -0.61 -2.06 - - - -2.07 -0.7 - -1.87 -
Bra006657 (HB26)
 - - 4.31 - - - 2.22 - - - - - 2.69 - - - - - - - - - - - - - - - - - -
Bra006735 (OSCA1.8)
 - - 3.0 - - - - - - - - - - - - - - - - - - - 4.52 - - - - - - - -
- - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Bra007828 (TAT)
 -2.92 -0.7 0.54 -4.32 0.47 1.9 -1.34 -1.4 -1.99 -1.02 -2.88 -2.26 -3.74 -1.73 1.07 0.41 0.13 -0.74 -0.91 -1.27 -2.29 -0.06 3.64 -0.97 -1.74 -2.41 -3.51 -2.06 -3.21 -1.98 -6.59
Bra009054 (MIPS3)
 - - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Bra011924 (ALB3)
 - - 4.32 - - - - - - - - - 3.46 - - - - - - - - - - - - - - - - - -
- - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-1.48 1.08 3.06 -1.52 -1.14 -0.33 -4.18 -3.14 -3.5 -0.33 -4.58 -2.34 -5.05 -0.3 -3.39 -0.77 -1.81 -3.7 -2.25 -5.17 -4.21 -0.68 1.22 -0.04 -0.1 2.13 -0.1 1.06 0.72 -0.6 -0.79
-4.68 1.12 -0.34 -1.69 -0.14 1.84 -2.23 -3.96 -2.23 -0.83 -2.71 -2.21 -4.89 -3.82 -1.74 0.7 -0.38 -1.69 -0.8 -1.82 -1.51 0.7 3.65 -0.21 -2.87 -3.06 -0.78 -1.98 -0.64 -0.48 -
- -0.47 4.07 0.56 - - - - - - - - - - - 0.38 -0.75 - - - - - 3.18 - - - -0.88 - - -0.81 -
Bra020652 (PRR4)
 - - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - 4.57 - 2.85 - - - - - - - - - - - - - - - - - - - - - - - - - -
Bra020979 (RLP30)
 0.4 1.22 2.71 -0.26 1.33 0.73 -1.7 -3.36 -0.38 -0.48 -0.93 0.14 -2.37 -0.29 -0.64 0.6 0.34 -3.93 -0.25 -2.2 -0.1 -0.68 -0.01 -3.42 -1.6 -0.14 -0.94 -1.77 -1.31 0.69 -4.65
- - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Bra021786 (DOR)
 - - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Bra022379 (MES16)
 - - 4.04 - - - - - - - - - - - - - - 3.26 - - - - 1.2 - - - - - - - 1.43
- - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Bra025875 (IGMT4)
 -0.7 1.12 1.83 -1.57 -0.61 -0.13 -0.77 0.22 -2.89 0.17 -0.65 -1.1 -1.49 -0.81 -1.85 0.22 -0.28 -1.28 -0.87 -0.71 -1.35 -1.48 0.52 0.19 0.18 0.77 0.19 0.81 1.14 0.99 -0.69
Bra029015 (ANK)
 - - 4.59 - - - - - - - - - - - - - - - - - - - 2.78 - - - - - - - -
- - 4.5 3.05 - - - - - - - - - - - - - - - - - - - - - - - - - - -
Bra030839 (RS1)
 1.64 1.58 3.38 1.2 -7.17 -1.25 -5.67 0.11 -0.78 -0.15 -0.6 0.1 0.78 -1.27 -1.16 -0.34 -0.46 -1.0 - - -1.03 -1.72 -0.14 -6.28 -4.99 -1.27 -3.26 -2.89 -2.52 -3.67 -2.27
Bra031304 (UGT71B1)
 - - 3.2 - - - - 0.87 - - - - 2.63 0.98 1.08 - - 1.12 - 0.95 - - 2.49 - - - - - - - -
- 0.91 3.5 - 0.58 0.49 -1.25 - - 1.82 -0.21 - - - - -0.83 0.1 1.21 0.63 - -0.06 1.11 0.55 - - - - - - - -
Bra032180 (PUB4)
 - - 4.63 - - - 2.65 - - - - - - - - - - - - - - - - - - - - - - - -
2.33 0.16 3.23 1.33 - 0.85 - - - 0.39 1.04 1.18 - - -1.6 -0.64 -0.19 -1.66 0.25 0.14 -1.85 -0.41 - - - - - - - - -
Bra035901 (TPXL8)
 1.85 - 3.34 1.89 - 1.39 - - - - - - - - - - - 1.37 - - - - 0.52 1.3 - - 0.42 0.79 - 0.52 -
Bra036481 (TAX2)
 -0.56 0.86 2.38 0.01 -1.26 0.03 -0.63 -2.57 -2.31 -1.14 -1.72 -2.68 -0.45 -0.64 -0.99 -1.08 0.08 -0.13 -0.84 -0.87 0.14 0.47 3.06 -1.83 -2.4 -0.21 -1.45 -2.84 -1.89 -0.9 -3.85
Bra037158 (cMCU)
 - - 3.95 - - - - - - - - - 1.29 - - - - - - - - - 3.4 - - - - - - - 1.34
- - 4.46 - - - - - - 3.17 - - - - - - - - - - - - - - - - - - - - -
Bra039990 (JOSL)
 2.44 - 3.74 - - 0.51 - 0.48 - 1.41 0.31 - 0.71 - - - - - 1.28 - - - - - - - - - - - 0.58
- - 3.76 2.47 - - - - - - - - 2.63 - - - - - - - - - - - - - - - - 2.53 -
-1.02 -2.96 1.77 0.47 -0.04 -3.29 -1.86 -1.9 -0.42 -0.7 -0.85 0.82 -0.03 -0.03 -0.79 0.4 -3.11 1.2 -2.35 1.05 -3.35 -1.82 2.09 -0.3 -0.07 1.05 -1.29 -3.13 -0.88 1.07 -3.2

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.