Heatmap: Cluster_25 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
2.71 - 1.22 1.38 2.38 - - - - - - - 3.2 - - - - 2.35 - - - - - - - - - - - - -
-0.03 0.45 0.22 0.41 -0.24 -0.57 -0.6 -0.39 -0.34 -0.23 -0.4 -0.47 0.11 0.28 0.23 0.05 -0.13 0.58 -0.24 -0.35 -0.13 -0.29 0.98 -0.01 -0.17 0.09 -0.02 -0.03 -0.18 -0.18 0.21
Bra001633 (IQD26)
-0.41 -0.37 2.47 2.89 0.55 -3.27 -4.91 0.25 -3.38 -0.95 -3.3 -3.96 1.55 -1.07 -1.82 -3.0 -0.77 1.87 -5.07 -3.17 - -2.66 0.32 -1.9 - 0.75 -2.27 -1.02 -2.3 -1.26 -4.65
Bra003217 (AGF2)
-1.89 0.78 0.62 1.12 -2.67 0.32 -0.53 -0.08 -0.66 -0.95 -1.3 -1.46 1.69 -0.73 -1.43 -0.78 -0.17 1.95 -1.29 -0.76 -1.05 -1.27 2.47 -1.63 -1.26 -1.54 -2.15 -2.02 -1.57 -0.66 -0.21
0.1 1.05 0.89 0.46 0.33 0.08 -0.25 -0.05 -1.75 -0.72 -0.82 -0.97 -0.14 -0.88 -1.22 -0.18 -0.12 1.32 -0.95 -0.3 -0.19 -0.15 1.52 -0.25 -0.31 0.24 -0.43 -0.77 -0.59 -0.53 -0.25
Bra003705 (LSM3B)
0.41 1.06 1.03 0.16 0.35 -0.11 -1.47 -1.43 -0.93 -0.35 -0.8 -0.7 0.27 -0.29 0.07 -0.51 -0.58 -0.31 -0.53 -0.65 -0.26 -0.58 1.87 -0.51 -0.29 0.26 -0.07 -0.57 -0.64 -0.19 0.48
1.22 1.66 1.43 0.32 0.45 -1.31 -1.29 -0.37 -1.06 -1.47 -2.26 -2.57 0.41 0.25 -0.39 -0.41 -1.04 0.3 -1.33 -0.92 -1.33 -0.42 2.1 -0.83 -0.4 -1.0 -0.42 -1.0 -1.11 -0.53 0.08
Bra006105 (ATL57)
2.2 - 1.37 - - -1.27 -0.39 0.74 0.65 - -1.44 - 1.63 0.78 - 0.07 - 1.36 -1.36 - - - 3.15 - - - - - -0.17 - -1.3
0.79 0.98 1.13 0.65 0.13 -0.57 -0.69 0.44 -1.24 -0.63 -0.96 -0.74 0.38 -0.42 -0.65 -0.42 -0.31 0.51 -0.77 -0.99 -0.38 -0.52 2.1 -0.81 -0.46 -0.68 -0.75 -0.73 -1.07 -0.19 -0.65
Bra007176 (AGF2)
1.15 2.22 1.93 1.46 -1.95 -0.26 -1.66 -0.59 -2.52 -1.12 -1.89 -1.87 1.51 -1.03 0.15 -2.45 -1.55 1.6 -1.88 -1.79 -1.82 -1.26 1.92 -3.59 -2.7 -2.14 -2.47 -5.51 -2.8 -1.96 -2.18
Bra008632 (AAD3)
0.66 0.81 1.27 1.3 -0.29 -0.84 -1.26 -0.81 -0.35 -0.36 -0.44 -1.01 1.12 -0.88 -0.34 -0.02 -0.43 1.09 -1.27 -0.82 -0.71 -0.44 1.45 -0.93 -1.85 0.37 -1.07 -0.72 -1.3 -0.45 -0.2
0.4 0.59 0.01 1.33 -0.37 -0.61 -0.66 -0.39 -1.03 -0.4 -0.3 -0.8 0.2 -0.23 -0.34 -0.22 -0.41 1.27 0.05 -0.26 -0.18 -0.11 1.35 -0.43 -0.5 0.45 -0.1 -0.51 -0.48 -0.89 -1.19
Bra009691 (CXE18)
0.58 0.24 0.84 1.35 -0.46 -2.0 -1.57 -1.5 -1.6 -1.06 -1.44 -2.76 1.88 -1.44 -0.29 -1.77 -2.71 1.97 -2.81 -2.34 -0.99 -3.37 0.94 0.05 0.65 0.47 -0.21 -0.47 0.34 -0.02 0.11
-0.16 0.05 1.12 1.09 -0.35 -0.82 -2.15 -0.97 -1.25 -1.62 -1.99 -0.97 1.08 -1.59 -1.85 1.3 0.67 0.58 -0.95 0.0 -0.04 -0.9 2.73 -1.75 -1.6 -2.19 -0.28 -1.81 -2.06 -0.7 -1.17
Bra010903 (SCPL45)
-0.16 0.82 0.78 -0.45 -0.27 -0.86 -0.03 0.29 -0.14 0.62 -0.12 -0.17 0.43 -0.98 -0.74 0.12 -0.08 0.67 -0.22 -0.13 -0.23 -0.13 0.6 0.04 -0.24 -0.36 -0.27 0.1 -0.11 -0.33 -0.66
Bra011294 (GDU1)
-0.94 1.15 0.71 0.12 -1.38 -1.01 -1.16 -0.99 -1.27 -0.03 -0.13 -0.21 1.8 -3.52 -1.27 -0.72 -1.18 1.42 -0.35 -0.7 -1.02 -1.21 1.99 -2.13 -0.59 0.65 -1.06 -0.84 -0.87 0.48 0.1
Bra012119 (ATDOF5.8)
0.17 -0.25 2.86 2.14 -1.85 -3.49 -0.65 -0.08 -3.65 -2.46 -2.59 -3.59 2.87 -2.71 -0.85 -2.65 -3.42 0.8 -3.44 -0.7 - -2.27 0.14 - -2.17 0.38 -1.02 - -1.54 -1.61 -2.31
Bra012204 (HYD1)
0.68 1.28 1.38 0.57 -0.26 -0.86 -1.23 -0.81 -0.83 -0.63 -0.92 -0.92 0.75 0.01 -0.31 -0.41 -0.39 0.79 -0.92 -0.96 -0.67 -0.59 1.77 -0.33 -0.4 -0.12 -0.34 -0.82 -0.85 -0.65 -0.43
Bra012634 (AGD8)
0.32 0.67 0.44 0.34 0.18 -0.36 -0.38 0.02 -0.26 -0.04 -0.19 -0.14 0.37 0.1 0.01 0.02 -0.07 0.16 -0.29 -0.26 -0.21 -0.12 0.45 -0.16 -0.23 -0.04 -0.24 -0.22 -0.4 -0.1 -0.18
- 0.68 3.39 1.61 - - -1.12 -0.79 - - -2.23 - - -0.36 -1.76 -1.8 - -0.54 0.09 - -1.01 -2.21 2.91 - -0.49 0.51 - - -1.84 - -0.21
Bra012899 (MES10)
0.4 1.22 1.24 1.16 -1.01 -0.96 -0.25 -0.45 -1.5 -0.11 -1.01 -0.7 1.03 -1.28 -1.44 -0.47 -0.83 -0.1 -1.44 -1.11 -0.33 -0.45 2.41 -1.32 -0.79 -0.48 -0.85 -1.39 -1.57 -0.19 0.27
Bra012981 (PDCB1)
0.81 0.93 1.13 0.66 -0.79 -1.32 -1.22 -0.23 -1.17 -0.64 -0.76 -1.1 1.14 -0.85 -1.28 -0.61 -0.31 0.98 -1.14 -1.21 -0.64 -1.18 0.87 -0.51 -0.32 0.87 0.15 0.06 -0.1 -0.08 0.5
Bra014721 (WLIM2a)
1.11 1.37 1.65 0.65 -0.41 -1.57 -1.18 -0.06 -1.57 -0.6 -0.64 -0.25 0.79 -1.16 -0.82 -0.78 -1.11 0.57 -0.93 -1.32 -1.32 -0.94 2.31 -1.55 -1.6 -1.07 -1.22 -1.43 -2.31 0.61 -0.27
Bra014870 (MVA1)
0.27 0.67 0.65 0.66 0.4 -0.37 -0.38 -0.12 -0.23 -0.2 -0.07 -0.19 0.58 -0.49 -0.27 -0.54 -0.54 0.35 -0.74 -1.19 -0.53 -0.8 1.06 -0.54 -0.26 0.42 -0.43 0.24 -0.07 -0.24 0.07
Bra016292 (ORC6)
0.05 1.54 1.31 1.0 0.33 -1.21 -1.91 -2.13 -0.62 -0.12 -0.16 0.02 1.51 -1.42 -1.2 -0.75 -0.52 0.69 -1.87 -0.86 -0.74 0.24 0.79 -1.1 -0.06 -1.79 -0.42 0.22 -0.65 0.07 -0.51
Bra016988 (NTP2)
1.58 0.33 1.24 2.06 -2.01 -1.14 -0.65 -0.01 - -0.48 - -1.07 -0.94 - - -1.82 0.57 1.36 - - - -0.62 3.07 - - -1.72 -0.11 - -1.83 -0.41 -0.87
Bra018779 (ATL75)
0.22 0.24 3.18 3.16 - - - - - - - - 0.17 - - - - - - - - - 3.26 - - - - - - - -
0.16 0.75 0.38 0.57 0.02 -0.29 -0.24 -0.12 -0.34 -0.31 -0.55 -0.58 0.82 0.36 -0.1 -0.2 -0.12 0.46 -0.69 -0.42 -0.59 -0.73 1.08 -0.16 -0.03 -0.15 -0.36 -0.51 -0.72 -0.2 0.31
Bra019846 (XTH8)
0.31 1.05 1.37 1.74 -2.11 -3.72 -1.72 -1.16 -0.52 0.43 -0.19 -0.77 0.29 -1.66 -1.43 0.69 -0.48 1.55 -0.18 -0.33 0.17 -1.24 0.91 -1.07 -1.04 1.31 -1.15 -0.84 -2.7 -2.11 -3.33
Bra020642 (CCR2)
- - 3.95 - - - - - - - - - - - - 1.41 - 2.66 - - - - 2.72 - - - - - - - -
Bra021617 (MIT1)
0.48 0.75 1.05 0.19 0.14 -0.25 -0.83 -0.15 -0.54 -0.39 -0.26 -0.7 -0.14 0.73 0.23 0.02 -0.26 0.03 -0.57 -0.31 -0.24 -0.32 1.41 -0.3 -0.65 -0.17 -0.4 -0.51 -0.58 -0.45 -0.32
Bra022643 (CRF3)
0.56 0.86 1.92 0.04 -1.93 -4.0 -1.86 -1.29 -2.53 -3.02 -2.46 -1.53 0.7 - -3.49 -2.1 -2.83 0.02 -0.69 -2.9 - -1.65 2.97 -0.7 -0.77 -2.21 -1.6 -0.55 -0.44 1.85 1.21
Bra023987 (GDU1)
-0.44 0.7 1.63 1.26 -3.02 -2.64 -5.24 -3.0 -3.54 -1.97 -2.66 - 2.11 - - - -4.86 2.03 -3.09 -2.89 - -5.09 2.95 -1.47 -0.23 0.27 -0.74 -0.69 -1.4 -0.18 -0.24
0.19 0.99 0.97 0.75 -0.16 -0.87 -0.34 -0.33 -0.35 0.08 -0.01 -0.13 0.83 -0.16 -0.24 -0.06 -0.06 0.55 -0.13 -0.29 -0.13 -0.23 0.4 -0.62 -0.36 0.37 -0.63 -0.86 -0.99 -0.68 -0.53
Bra024504 (CYCB2;1)
1.06 1.51 2.16 1.67 -0.49 -2.13 -1.34 -1.08 -0.22 -0.9 -0.88 -0.96 2.16 -0.89 -1.06 -0.82 -0.17 0.23 -1.76 -0.74 -1.57 -2.48 0.04 -0.9 -0.77 -0.97 -4.2 -0.67 -0.98 -1.5 -1.2
Bra024847 (CYK8)
0.34 1.04 1.48 1.22 -1.55 -2.35 0.0 0.49 -1.88 -0.4 -0.93 -0.9 1.05 -1.33 -2.1 -0.41 0.41 0.73 -0.23 -1.18 -0.69 -0.65 0.96 -0.85 -0.63 0.58 -0.15 -1.48 -1.61 0.01 0.37
Bra025688 (MIF3)
-0.3 1.72 3.06 -1.28 0.42 - -0.17 - - - 0.43 -1.35 1.8 - - - - 1.66 - - - - 2.77 - - - - -0.48 - - -
Bra026276 (ULT)
1.6 1.67 2.09 1.37 -0.58 -1.81 -1.79 -1.02 -1.77 -1.76 -1.48 -1.6 1.64 -0.58 -1.08 -1.05 -0.36 1.21 -1.81 -2.43 -1.84 -0.87 0.35 -1.25 -1.82 0.49 -1.1 -1.6 -2.48 -0.66 -0.27
0.8 1.57 1.28 1.27 -1.18 -2.69 -1.41 -0.75 0.12 0.1 -0.45 -0.58 1.38 -3.2 -1.2 0.02 0.35 1.14 0.06 -0.99 -1.09 -0.02 1.14 -1.22 -0.76 -0.34 -2.13 -2.53 -3.22 -0.64 -0.99
Bra027181 (AQP1)
-0.1 1.11 1.79 1.32 -2.02 -3.71 -0.4 -0.2 -0.91 -0.08 0.02 -0.1 1.69 -1.34 -2.16 -0.13 -0.17 0.72 -1.71 -0.54 -0.58 -0.64 0.76 -0.97 -0.72 0.52 -0.81 -1.66 -1.55 -0.68 -0.19
0.34 0.61 1.14 0.3 -0.67 -1.31 -1.07 -1.0 -0.63 -0.13 0.17 -0.35 0.25 0.51 0.5 0.01 -0.25 0.74 -0.54 -0.5 -0.86 -0.16 0.89 -0.05 -0.14 0.02 -0.06 -0.75 -0.44 -0.48 0.23
1.16 0.51 -0.5 2.38 -0.33 0.51 -0.63 0.06 -0.46 -1.49 - -2.07 1.59 -1.29 -1.12 - -0.36 1.33 -0.97 -2.41 -1.97 -2.6 2.7 -0.76 - - -3.48 -1.62 -2.24 -2.29 -
Bra028563 (TMN8)
0.34 0.77 0.73 0.49 0.25 -0.35 -0.26 0.08 -0.35 0.04 -0.2 -0.2 0.09 0.06 0.01 0.27 -0.0 0.56 -0.08 -0.28 -0.15 -0.35 -0.22 -0.23 -0.21 -0.01 -0.17 -0.47 -0.77 -0.45 -0.35
Bra028998 (FIP2)
-0.05 0.44 0.39 0.25 0.19 -0.32 -0.04 0.16 0.05 0.14 -0.01 -0.4 0.18 -0.24 -0.29 -0.14 0.08 -0.0 -0.22 -0.03 0.05 0.19 0.1 0.03 -0.09 -0.09 -0.06 -0.01 -0.34 -0.16 -0.19
0.23 0.53 0.57 0.39 0.1 -0.25 -0.46 -0.21 -0.23 0.03 -0.02 -0.1 0.28 0.18 0.08 0.03 -0.04 0.43 -0.18 -0.27 -0.36 -0.16 -0.03 -0.19 -0.23 0.14 -0.09 -0.43 -0.27 -0.19 -0.07
Bra031475 (SRK2B)
-0.08 1.07 1.18 0.12 0.03 -0.2 -0.61 -1.3 -0.72 0.04 -0.19 -0.37 0.27 -0.99 -0.2 0.05 0.14 0.63 0.28 -0.32 -0.82 0.53 1.2 -0.22 0.05 -0.51 -0.17 -1.46 -1.17 -0.51 -0.39
0.45 0.81 1.36 0.85 -0.25 -1.14 -0.65 -1.03 0.35 -0.33 -0.26 -0.72 1.01 0.07 -0.23 -0.14 -0.08 0.68 -0.85 -0.9 -0.46 -0.3 0.43 -0.46 -0.72 0.26 -0.6 -0.41 -0.77 -0.22 -0.23
0.19 0.3 0.38 -0.01 0.03 -0.28 -0.11 0.11 -0.17 -0.07 -0.15 0.0 0.24 0.03 -0.07 -0.27 -0.18 -0.16 -0.27 -0.18 -0.25 -0.05 0.83 -0.06 -0.16 -0.18 -0.1 -0.14 -0.32 0.1 0.31
0.72 1.04 1.0 1.19 -1.61 -2.02 -1.1 0.28 -2.51 -0.31 -0.18 -0.36 0.7 -2.46 -1.58 -1.29 -0.67 0.64 -1.12 -0.31 -0.44 -0.16 0.8 -0.44 -0.01 0.93 0.46 -1.27 -1.3 0.31 0.72
1.59 2.07 2.37 1.24 -1.74 -2.68 -2.83 - -4.17 -0.65 -1.59 -2.01 0.85 -3.92 -2.75 - -1.13 1.4 -1.99 -2.18 -2.72 -1.18 1.82 - -3.29 0.93 -1.85 -0.15 -0.39 -0.59 -4.27
Bra037816 (HB25)
1.03 0.55 1.05 1.0 0.28 0.04 -2.18 -1.44 -1.48 -1.25 -1.41 -1.56 2.04 0.25 0.46 -0.48 -1.08 1.04 -1.35 -1.23 -0.97 -0.76 0.34 -0.5 -1.08 0.1 -1.58 0.08 -0.18 -0.99 -0.04
Bra038632 (CYP94B1)
-1.85 -0.53 2.78 0.34 0.3 1.02 -2.39 -1.57 - -0.68 - -2.23 1.8 -0.33 -2.79 - - 1.31 - -3.2 -2.35 - 2.71 - - -0.86 -0.68 -3.02 -0.04 -1.49 -0.18
Bra039135 (HB20)
0.98 1.49 1.08 1.88 -2.38 - -3.66 -1.88 -1.3 -2.09 -1.68 -2.27 1.65 -4.07 -2.51 -1.81 -1.96 1.72 -2.15 -3.32 -0.71 - 2.55 -1.94 -0.7 0.06 -1.18 -1.54 -1.39 -1.49 0.31
-0.1 1.16 1.48 0.26 0.45 -0.92 -1.39 -0.49 -1.94 -1.26 -1.83 -1.38 0.53 -0.48 -0.03 -0.39 -0.98 0.18 -1.55 -1.05 -1.57 -1.31 2.92 -3.06 -0.87 -2.07 -1.49 -1.28 -1.16 0.59 0.27
0.85 1.09 1.21 0.74 -1.36 -1.13 -0.71 -0.28 -1.01 -0.43 -0.77 -0.29 0.33 -1.06 -0.58 -0.29 0.05 0.12 -0.28 -0.69 -0.43 -0.64 2.2 -0.44 -0.65 -0.34 -0.34 -0.99 -1.3 -0.4 -0.43
Bra040376 (RABA5b)
0.14 0.23 0.29 0.08 0.13 -0.03 -0.05 -0.03 -0.23 -0.33 -0.37 -0.43 0.47 0.05 0.02 -0.01 -0.0 0.16 -0.24 -0.01 -0.13 -0.11 0.42 0.13 -0.19 -0.04 0.01 -0.41 -0.29 -0.18 0.38
0.48 1.03 0.86 0.37 -0.24 -0.36 -0.81 -0.97 -0.51 0.24 -0.43 -0.82 0.47 -0.88 -0.34 0.22 0.02 1.08 -0.83 -0.62 -0.97 -0.35 1.24 0.07 -0.77 0.67 -0.38 -0.71 -0.82 -0.41 -0.43

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.