1. Home
  2. Tools
  3. Expression Heatmap
  4. Results

Heatmap: Cluster_25 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

 Transpose table  Download table
Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
0.05 0.0 0.02 0.02 0.04 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.08 0.0 0.0 0.0 0.0 0.04 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
5.58 7.82 6.65 7.6 4.85 3.86 3.77 4.37 4.52 4.87 4.32 4.13 6.15 6.93 6.7 5.9 5.21 8.54 4.84 4.48 5.22 4.66 11.29 5.68 5.09 6.07 5.65 5.6 5.02 5.04 6.61
Bra001633 (IQD26)
 0.19 0.2 1.41 1.89 0.37 0.03 0.01 0.3 0.02 0.13 0.03 0.02 0.75 0.12 0.07 0.03 0.15 0.93 0.01 0.03 0.0 0.04 0.32 0.07 0.0 0.43 0.05 0.13 0.05 0.11 0.01
Bra003217 (AGF2)
 0.19 1.2 1.08 1.53 0.11 0.87 0.49 0.66 0.44 0.36 0.29 0.26 2.26 0.42 0.26 0.41 0.62 2.71 0.29 0.41 0.34 0.29 3.88 0.23 0.29 0.24 0.16 0.17 0.24 0.45 0.61
31.03 59.84 53.62 39.67 36.25 30.66 24.29 27.91 8.57 17.55 16.32 14.78 26.28 15.69 12.4 25.49 26.57 72.38 15.0 23.48 25.4 26.1 83.17 24.38 23.29 34.24 21.48 16.91 19.26 20.02 24.32
Bra003705 (LSM3B)
 29.25 46.05 44.81 24.52 27.96 20.46 7.94 8.18 11.59 17.27 12.61 13.51 26.62 17.98 23.04 15.49 14.74 17.8 15.2 13.99 18.39 14.76 80.34 15.41 17.95 26.39 21.03 14.85 14.16 19.3 30.75
22.94 31.02 26.4 12.29 13.39 3.97 4.03 7.6 4.72 3.54 2.05 1.65 13.06 11.68 7.5 7.38 4.78 12.08 3.91 5.21 3.91 7.34 42.15 5.51 7.43 4.92 7.33 4.9 4.56 6.8 10.36
Bra006105 (ATL57)
 1.27 0.0 0.72 0.0 0.0 0.11 0.21 0.46 0.43 0.0 0.1 0.0 0.86 0.47 0.0 0.29 0.0 0.71 0.11 0.0 0.0 0.0 2.46 0.0 0.0 0.0 0.0 0.0 0.25 0.0 0.11
4.06 4.66 5.14 3.71 2.57 1.58 1.45 3.19 1.0 1.53 1.21 1.41 3.06 1.76 1.5 1.75 1.9 3.35 1.39 1.18 1.81 1.65 10.13 1.35 1.71 1.47 1.4 1.42 1.12 2.06 1.5
Bra007176 (AGF2)
 2.96 6.23 5.08 3.66 0.34 1.12 0.42 0.89 0.23 0.61 0.36 0.36 3.8 0.65 1.48 0.24 0.46 4.04 0.36 0.39 0.38 0.56 5.07 0.11 0.2 0.3 0.24 0.03 0.19 0.34 0.3
Bra008632 (AAD3)
 2.93 3.27 4.5 4.6 1.53 1.04 0.78 1.06 1.45 1.45 1.37 0.92 4.03 1.01 1.47 1.83 1.38 3.96 0.77 1.06 1.14 1.37 5.1 0.97 0.52 2.41 0.89 1.13 0.76 1.36 1.62
5.93 6.73 4.51 11.27 3.47 2.93 2.84 3.42 2.2 3.4 3.64 2.57 5.15 3.82 3.54 3.86 3.37 10.85 4.64 3.75 3.97 4.14 11.41 3.32 3.17 6.12 4.18 3.15 3.21 2.41 1.96
Bra009691 (CXE18)
 0.73 0.58 0.87 1.24 0.35 0.12 0.16 0.17 0.16 0.23 0.18 0.07 1.8 0.18 0.4 0.14 0.07 1.91 0.07 0.1 0.25 0.05 0.93 0.5 0.77 0.67 0.42 0.35 0.62 0.48 0.53
0.32 0.38 0.79 0.77 0.28 0.2 0.08 0.18 0.15 0.12 0.09 0.18 0.76 0.12 0.1 0.89 0.57 0.54 0.19 0.36 0.35 0.19 2.4 0.11 0.12 0.08 0.3 0.1 0.09 0.22 0.16
Bra010903 (SCPL45)
 2.12 4.19 4.08 1.74 1.97 1.31 2.33 2.9 2.15 3.64 2.18 2.11 3.19 1.2 1.42 2.58 2.25 3.78 2.04 2.17 2.02 2.16 3.6 2.43 2.01 1.85 1.97 2.53 2.2 1.88 1.5
Bra011294 (GDU1)
 0.81 3.42 2.52 1.68 0.59 0.77 0.69 0.78 0.64 1.52 1.41 1.33 5.38 0.13 0.64 0.94 0.68 4.14 1.21 0.95 0.76 0.67 6.15 0.35 1.03 2.43 0.74 0.86 0.84 2.15 1.66
Bra012119 (ATDOF5.8)
 0.47 0.35 3.05 1.86 0.12 0.04 0.27 0.4 0.03 0.08 0.07 0.03 3.07 0.06 0.23 0.07 0.04 0.73 0.04 0.26 0.0 0.09 0.46 0.0 0.09 0.55 0.21 0.0 0.14 0.14 0.08
Bra012204 (HYD1)
 18.77 28.53 30.55 17.43 9.79 6.46 4.99 6.67 6.61 7.61 6.2 6.22 19.69 11.78 9.44 8.81 8.93 20.31 6.22 6.04 7.36 7.8 39.92 9.35 8.91 10.78 9.28 6.66 6.53 7.47 8.72
Bra012634 (AGD8)
 7.99 10.18 8.68 8.06 7.25 4.97 4.92 6.47 5.34 6.2 5.61 5.79 8.23 6.84 6.45 6.46 6.09 7.12 5.22 5.34 5.53 5.88 8.7 5.73 5.45 6.2 5.41 5.5 4.84 5.96 5.62
0.0 0.04 0.23 0.07 0.0 0.0 0.01 0.01 0.0 0.0 0.0 0.0 0.0 0.02 0.01 0.01 0.0 0.02 0.02 0.0 0.01 0.0 0.17 0.0 0.02 0.03 0.0 0.0 0.01 0.0 0.02
Bra012899 (MES10)
 12.07 21.28 21.6 20.33 4.54 4.68 7.68 6.66 3.22 8.46 4.54 5.61 18.58 3.76 3.37 6.6 5.15 8.51 3.37 4.22 7.26 6.69 48.62 3.65 5.28 6.56 5.06 3.49 3.07 8.0 11.0
Bra012981 (PDCB1)
 17.6 19.09 21.95 15.89 5.82 4.02 4.31 8.56 4.45 6.42 5.93 4.67 22.19 5.57 4.13 6.58 8.12 19.77 4.56 4.35 6.46 4.42 18.3 7.04 8.03 18.3 11.18 10.49 9.35 9.49 14.19
Bra014721 (WLIM2a)
 24.81 29.63 35.84 18.02 8.64 3.87 5.04 11.03 3.87 7.54 7.35 9.61 19.82 5.14 6.51 6.69 5.29 16.95 6.01 4.58 4.6 5.95 56.85 3.92 3.79 5.45 4.91 4.25 2.31 17.45 9.47
Bra014870 (MVA1)
 4.73 6.27 6.15 6.21 5.18 3.05 3.02 3.61 3.35 3.43 3.75 3.44 5.88 2.79 3.26 2.7 2.71 5.02 2.35 1.73 2.73 2.26 8.19 2.71 3.29 5.26 2.92 4.66 3.76 3.34 4.13
Bra016292 (ORC6)
 0.55 1.55 1.32 1.07 0.67 0.23 0.14 0.12 0.35 0.49 0.48 0.54 1.52 0.2 0.23 0.32 0.37 0.86 0.15 0.29 0.32 0.63 0.93 0.25 0.51 0.15 0.4 0.62 0.34 0.56 0.38
Bra016988 (NTP2)
 0.09 0.04 0.07 0.12 0.01 0.01 0.02 0.03 0.0 0.02 0.0 0.01 0.02 0.0 0.0 0.01 0.04 0.08 0.0 0.0 0.0 0.02 0.25 0.0 0.0 0.01 0.03 0.0 0.01 0.02 0.02
Bra018779 (ATL75)
 0.02 0.02 0.18 0.18 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.02 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.2 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
6.42 9.68 7.48 8.54 5.83 4.7 4.88 5.3 4.54 4.65 3.94 3.86 10.16 7.39 5.35 5.02 5.3 7.93 3.57 4.31 3.83 3.46 12.13 5.17 5.62 5.17 4.49 4.04 3.49 5.0 7.14
Bra019846 (XTH8)
 8.24 13.74 17.17 22.17 1.54 0.51 2.02 2.97 4.65 8.98 5.82 3.89 8.15 2.1 2.48 10.73 4.77 19.49 5.86 5.29 7.49 2.81 12.46 3.17 3.24 16.45 3.01 3.71 1.02 1.54 0.66
Bra020642 (CCR2)
 0.0 0.0 0.04 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.01 0.0 0.02 0.0 0.0 0.0 0.0 0.02 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Bra021617 (MIT1)
 6.73 8.11 9.96 5.49 5.31 4.06 2.7 4.33 3.3 3.67 4.03 2.96 4.36 7.98 5.66 4.9 4.02 4.9 3.25 3.9 4.08 3.86 12.79 3.92 3.07 4.28 3.64 3.37 3.23 3.54 3.87
Bra022643 (CRF3)
 0.22 0.27 0.56 0.15 0.04 0.01 0.04 0.06 0.03 0.02 0.03 0.05 0.24 0.0 0.01 0.03 0.02 0.15 0.09 0.02 0.0 0.05 1.15 0.09 0.09 0.03 0.05 0.1 0.11 0.53 0.34
Bra023987 (GDU1)
 0.73 1.61 3.07 2.37 0.12 0.16 0.03 0.12 0.09 0.25 0.16 0.0 4.28 0.0 0.0 0.0 0.03 4.06 0.12 0.13 0.0 0.03 7.66 0.36 0.84 1.2 0.59 0.61 0.38 0.87 0.84
115.43 200.56 197.6 170.02 90.36 55.41 79.94 80.22 79.06 106.81 100.26 92.01 179.77 90.3 85.63 96.78 96.68 148.37 92.24 82.35 92.07 85.92 133.18 65.83 78.88 130.44 65.36 55.66 50.79 62.88 70.13
Bra024504 (CYCB2;1)
 1.23 1.68 2.66 1.88 0.42 0.14 0.23 0.28 0.51 0.32 0.32 0.3 2.65 0.32 0.28 0.34 0.53 0.69 0.18 0.35 0.2 0.11 0.61 0.32 0.35 0.3 0.03 0.37 0.3 0.21 0.26
Bra024847 (CYK8)
 6.84 11.19 15.15 12.64 1.85 1.07 5.43 7.63 1.48 4.1 2.85 2.91 11.2 2.16 1.27 4.09 7.22 8.99 4.63 2.39 3.36 3.45 10.53 3.02 3.51 8.1 4.88 1.94 1.77 5.48 7.02
Bra025688 (MIF3)
 0.37 1.5 3.79 0.19 0.61 0.0 0.41 0.0 0.0 0.0 0.61 0.18 1.59 0.0 0.0 0.0 0.0 1.44 0.0 0.0 0.0 0.0 3.11 0.0 0.0 0.0 0.0 0.33 0.0 0.0 0.0
Bra026276 (ULT)
 6.1 6.38 8.53 5.18 1.35 0.57 0.58 0.99 0.59 0.59 0.72 0.66 6.27 1.34 0.95 0.97 1.57 4.64 0.57 0.37 0.56 1.1 2.56 0.85 0.57 2.82 0.94 0.66 0.36 1.28 1.67
5.5 9.33 7.65 7.59 1.39 0.49 1.18 1.88 3.43 3.37 2.31 2.11 8.2 0.34 1.37 3.2 4.01 6.93 3.29 1.58 1.48 3.1 6.95 1.35 1.86 2.49 0.72 0.54 0.34 2.03 1.58
Bra027181 (AQP1)
 51.28 119.06 190.81 137.12 13.61 4.2 41.69 48.04 29.25 51.99 55.65 51.22 177.67 21.77 12.3 50.17 48.86 90.4 16.86 37.85 36.94 35.21 93.01 28.14 33.33 79.08 31.36 17.42 18.73 34.41 48.38
56.86 68.69 98.68 55.07 28.2 18.05 21.34 22.45 28.95 40.99 50.39 35.22 53.49 63.87 63.39 45.19 37.67 74.95 30.86 31.82 24.77 40.08 83.05 43.4 40.74 45.56 42.95 26.59 33.05 32.11 52.72
0.1 0.06 0.03 0.23 0.04 0.06 0.03 0.05 0.03 0.02 0.0 0.01 0.13 0.02 0.02 0.0 0.03 0.11 0.02 0.01 0.01 0.01 0.29 0.03 0.0 0.0 0.0 0.01 0.01 0.01 0.0
Bra028563 (TMN8)
 14.07 18.95 18.47 15.57 13.2 8.73 9.29 11.78 8.73 11.41 9.69 9.65 11.87 11.61 11.22 13.39 11.08 16.42 10.53 9.16 10.01 8.75 9.57 9.45 9.62 11.07 9.9 8.01 6.52 8.11 8.7
Bra028998 (FIP2)
 7.53 10.57 10.26 9.28 8.91 6.26 7.59 8.71 8.07 8.58 7.74 5.89 8.81 6.59 6.36 7.1 8.27 7.8 6.68 7.65 8.05 8.91 8.38 7.96 7.34 7.33 7.5 7.74 6.16 6.99 6.84
16.63 20.51 21.14 18.62 15.25 11.95 10.32 12.28 12.16 14.49 14.01 13.28 17.28 16.16 15.05 14.51 13.81 19.19 12.52 11.8 11.07 12.69 13.88 12.47 12.11 15.68 13.4 10.55 11.82 12.5 13.55
Bra031475 (SRK2B)
 6.9 15.25 16.48 7.92 7.44 6.31 4.75 2.95 4.41 7.49 6.36 5.64 8.78 3.65 6.32 7.53 8.03 11.28 8.85 5.82 4.11 10.5 16.74 6.26 7.51 5.09 6.47 2.64 3.24 5.11 5.56
2.23 2.85 4.18 2.92 1.36 0.74 1.04 0.8 2.07 1.3 1.36 0.99 3.27 1.71 1.38 1.48 1.53 2.6 0.9 0.87 1.19 1.32 2.19 1.18 0.99 1.94 1.08 1.22 0.95 1.4 1.39
26.46 28.57 30.29 23.13 23.75 19.1 21.58 25.01 20.56 22.07 20.92 23.26 27.37 23.63 22.07 19.21 20.42 20.8 19.31 20.46 19.53 22.45 41.12 22.23 20.75 20.46 21.67 21.12 18.58 24.81 28.81
10.87 13.51 13.2 15.02 2.15 1.62 3.06 7.99 1.15 5.31 5.81 5.13 10.67 1.2 2.2 2.69 4.14 10.23 3.02 5.31 4.86 5.89 11.49 4.86 6.52 12.55 9.05 2.72 2.67 8.17 10.83
2.84 3.94 4.87 2.22 0.28 0.15 0.13 0.0 0.05 0.6 0.31 0.23 1.7 0.06 0.14 0.0 0.43 2.49 0.24 0.21 0.14 0.42 3.33 0.0 0.1 1.79 0.26 0.85 0.72 0.62 0.05
Bra037816 (HB25)
 3.84 2.76 3.9 3.76 2.29 1.93 0.41 0.69 0.67 0.79 0.71 0.64 7.75 2.25 2.6 1.35 0.89 3.87 0.74 0.8 0.96 1.11 2.38 1.34 0.89 2.02 0.63 1.99 1.67 0.95 1.84
Bra038632 (CYP94B1)
 0.02 0.04 0.43 0.08 0.08 0.12 0.01 0.02 0.0 0.04 0.0 0.01 0.21 0.05 0.01 0.0 0.0 0.15 0.0 0.01 0.01 0.0 0.4 0.0 0.0 0.03 0.04 0.01 0.06 0.02 0.05
Bra039135 (HB20)
 0.57 0.81 0.61 1.06 0.05 0.0 0.02 0.08 0.12 0.07 0.09 0.06 0.9 0.02 0.05 0.08 0.07 0.95 0.06 0.03 0.18 0.0 1.68 0.07 0.18 0.3 0.13 0.1 0.11 0.1 0.36
5.33 12.7 15.88 6.82 7.8 3.02 2.17 4.06 1.48 2.37 1.61 2.19 8.22 4.09 5.56 4.33 2.89 6.45 1.95 2.74 1.91 2.29 43.12 0.68 3.12 1.36 2.03 2.34 2.54 8.57 6.87
6.65 7.88 8.55 6.15 1.44 1.69 2.25 3.04 1.83 2.73 2.16 3.02 4.64 1.77 2.47 3.02 3.83 4.0 3.03 2.29 2.74 2.37 16.98 2.72 2.35 2.92 2.9 1.85 1.49 2.8 2.75
Bra040376 (RABA5b)
 21.14 22.56 23.47 20.26 20.97 18.79 18.54 18.81 16.45 15.27 14.92 14.27 26.64 19.97 19.51 19.1 19.21 21.51 16.31 19.08 17.58 17.78 25.75 21.1 16.82 18.75 19.43 14.44 15.74 16.97 25.04
2.0 2.93 2.6 1.86 1.21 1.12 0.82 0.74 1.01 1.69 1.07 0.81 1.99 0.78 1.13 1.68 1.46 3.04 0.81 0.94 0.73 1.12 3.4 1.51 0.84 2.28 1.1 0.88 0.81 1.08 1.07

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)