Heatmap: Cluster_149 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra001588 (ERF4)
-1.03 -1.57 -0.3 -1.35 0.62 0.89 -0.92 -1.4 -0.4 -0.58 -0.79 -0.94 -0.96 0.78 1.1 0.05 -0.14 -0.47 0.1 0.26 -0.24 0.01 0.74 0.16 -0.25 -0.74 -0.28 0.27 1.06 0.83 -0.19
Bra002400 (CAF1b)
-0.88 -0.34 1.89 -0.1 -0.01 -1.18 -2.08 -1.51 -1.19 -1.42 -0.88 -0.79 -0.42 -0.3 -0.49 -0.46 -1.51 -0.56 -0.4 -0.01 -0.71 -1.34 0.86 -0.8 -2.19 0.09 -1.17 -0.66 2.2 2.04 -0.26
Bra004165 (TCH2)
-1.99 -1.94 -0.44 -0.96 0.38 -0.25 -0.76 -1.12 -0.41 -0.46 -0.42 -0.6 -0.38 0.77 0.09 -0.27 -0.5 -0.19 -0.56 0.03 -0.86 -0.38 1.61 -0.1 -0.08 1.12 -0.74 0.31 1.01 1.02 0.28
-0.73 -0.44 0.42 0.04 -0.09 -0.4 -1.61 -1.14 -0.24 -0.57 -0.77 -0.92 -0.21 0.36 0.91 -0.54 -0.74 1.25 -0.41 -0.33 -0.22 -0.74 0.67 -0.2 -0.62 0.38 -0.34 -0.09 1.0 1.09 0.28
0.33 0.57 0.8 0.36 0.29 -0.13 -0.62 -0.75 -0.67 -0.22 -0.38 -0.24 -0.53 -0.84 -0.35 -0.23 -0.22 0.09 -0.23 0.02 -0.31 -0.06 0.37 -0.49 -0.17 0.62 -0.16 -0.08 -0.0 0.94 0.14
0.05 - 3.75 0.86 - - - - - -1.14 - - -2.61 -2.46 -2.59 - - 0.38 - - - -1.93 1.67 - -2.5 -0.78 - -0.67 1.62 2.09 -1.7
-0.25 -0.16 2.5 -1.19 -2.94 0.33 -3.54 -5.37 - -2.95 -3.13 - - -3.75 -2.09 -5.36 -5.41 -25.77 -1.88 - -1.46 -3.09 0.1 -0.16 -0.64 2.19 -1.09 0.38 2.22 2.54 -0.13
Bra006696 (EXO70H7)
0.57 0.35 0.9 0.59 0.81 0.34 -0.47 -0.51 -0.4 -0.59 -0.05 -0.56 -0.8 -0.4 -0.13 -1.35 -0.6 -0.34 -0.71 -0.42 -0.4 -1.14 -0.16 -0.4 -0.15 1.04 -0.34 0.49 0.89 0.75 -1.47
Bra006925 (PUB22)
-0.55 0.1 1.77 0.26 -1.26 0.22 -1.95 -2.18 -2.55 -2.04 -1.08 -1.69 -4.05 -4.74 -3.36 -2.37 -1.5 -3.41 -1.61 -0.85 -0.97 -1.79 -0.23 -0.14 0.07 1.62 0.08 0.27 2.05 2.47 0.03
Bra007202 (CCR3)
-1.01 0.23 0.45 -0.18 -0.01 -0.12 -0.82 -1.24 -0.2 -0.11 -0.29 -0.07 -0.27 0.62 -0.01 -0.22 -0.33 -0.32 -0.56 -0.21 -0.33 -0.28 0.97 -0.41 -0.3 1.11 -0.12 -0.15 0.45 1.0 -0.38
Bra007205 (SZF1)
0.03 0.4 1.07 0.17 0.13 0.11 -2.03 -2.62 -1.55 -1.32 -1.58 -1.6 -1.9 0.2 -0.17 -0.65 -1.21 -0.5 -1.48 -0.83 -1.42 -0.73 2.14 -1.03 -1.35 1.79 -1.38 -0.37 0.92 1.71 -1.31
Bra008101 (NUDT21)
-0.1 -0.71 1.96 0.7 -0.34 -0.61 -2.03 -1.15 -0.84 -1.1 -1.42 -1.28 -1.56 -2.12 -0.02 -0.97 -3.55 -0.93 -0.92 0.45 -1.78 -3.61 -0.54 -0.42 -2.4 0.3 -3.23 -0.41 2.23 2.52 -0.18
-0.3 -1.74 1.74 0.75 - -1.61 -6.43 -0.36 -7.05 0.34 -2.16 -15.09 -23.01 -1.45 -1.1 -13.49 -4.59 0.97 1.54 -0.02 -0.54 -30.61 1.1 -0.52 0.44 1.98 -2.72 -1.08 1.2 1.7 -0.97
Bra009726 (AtFDA19)
-2.93 - 1.4 -1.58 -3.33 -3.34 -2.56 - - - -1.81 - -2.04 -1.12 -2.99 -1.03 - 0.78 -2.14 - - - 1.92 -2.29 -0.29 1.06 -0.26 0.4 2.19 2.88 1.59
0.23 -1.85 1.43 1.28 -1.19 -2.97 -2.71 -2.12 - -2.54 -3.69 - -2.39 - -3.99 -0.82 - 0.13 -2.5 -0.33 -3.27 - 1.55 -3.38 -0.82 2.06 - -4.2 2.2 2.85 -0.65
0.67 0.78 2.42 2.03 0.5 -0.26 -1.06 -1.31 -1.88 -1.44 -1.52 -2.47 -3.45 -2.77 -3.28 -1.9 -2.79 -0.13 -1.01 -1.06 -1.77 -0.88 -0.33 -1.58 -1.96 0.55 -2.68 -1.72 1.16 2.07 -0.46
Bra010880 (ERF11)
-1.79 -1.59 0.18 -1.97 0.9 0.58 -0.98 -1.81 -0.67 -1.19 -1.3 -1.5 -1.12 0.88 1.26 -0.5 -1.94 0.37 -0.3 -0.23 -1.14 -0.8 1.67 -0.55 -1.34 0.23 -1.93 0.33 1.66 1.47 -0.98
Bra012803 (PUB22)
-1.54 -1.06 2.05 1.82 -2.13 -1.19 -1.09 -2.53 -1.31 -1.02 -0.6 -2.47 0.64 -0.54 -0.1 -1.25 -1.75 -1.35 -0.56 -0.18 -1.14 -1.62 -0.11 0.63 -1.14 -1.6 -0.28 -0.59 1.66 2.11 -0.71
Bra012910 (MYB77)
-0.2 -0.63 1.23 1.54 0.45 -1.46 -5.16 -3.45 -2.16 -0.83 -1.74 -3.13 -2.52 -0.81 -2.5 -1.59 -2.1 0.56 -2.7 -1.93 -2.15 -2.22 1.6 -2.73 -2.84 2.36 -2.97 -1.54 0.06 2.76 -0.69
Bra012938 (ERF104)
1.27 1.97 2.56 1.84 -0.56 -1.16 -3.44 -2.73 -2.51 -1.69 -1.57 -1.68 -4.22 -1.9 -2.45 -2.59 -2.65 -1.72 -2.34 -1.74 -2.65 -1.24 0.53 -2.49 -2.85 1.26 -2.01 -1.24 0.36 2.01 -1.55
0.04 0.11 1.06 0.61 0.08 0.44 -1.21 -1.15 -0.43 -1.11 -0.11 -0.02 -1.2 -0.73 -0.47 -0.13 -0.49 -1.41 -0.94 0.47 -0.77 0.06 -0.35 -0.55 -0.12 0.59 -0.31 -0.33 1.23 1.45 0.01
Bra016495 (PUP14)
1.36 1.6 2.65 1.64 -0.1 -2.63 -2.69 -2.48 -2.43 -2.84 -2.02 -1.3 -3.97 -2.08 -2.62 -2.6 -2.37 -0.63 -1.77 -2.28 -3.35 -2.07 1.27 -1.28 -1.26 1.0 -1.03 -0.62 0.75 1.43 -0.92
Bra016686 (BPC2)
0.12 0.58 0.81 0.91 0.05 -0.73 -0.43 0.04 -0.56 -0.43 -0.19 0.01 -0.02 -0.12 -0.29 -0.13 -0.35 0.23 -0.47 -0.5 -0.43 -0.36 0.4 0.01 -0.06 0.65 -0.28 -0.42 -0.32 0.41 -0.07
Bra016763 (DDF1)
-1.95 -2.66 2.2 1.18 -3.65 -3.61 - -2.79 - -3.65 - - - -4.27 - -2.77 - - -2.18 -0.37 -4.69 - -0.49 -4.69 -1.98 2.78 -3.63 -0.87 3.18 2.13 -2.47
-0.86 -0.36 0.99 -0.67 -1.43 -0.05 -0.29 -0.6 -0.84 -0.06 -0.88 -0.35 -0.03 -3.45 -0.86 -0.08 -0.21 1.32 0.24 -0.23 -0.34 -0.24 -0.24 0.28 0.22 0.73 -1.03 -0.67 0.94 1.56 -0.11
Bra018346 (AP2C1)
-1.47 -0.96 0.87 -0.76 -1.05 -0.54 -1.7 -1.83 -2.09 -0.92 -1.38 -1.58 0.42 -2.22 -0.76 -0.76 -0.7 -0.26 -1.51 -1.13 -1.79 -0.51 2.53 -0.91 -0.88 0.41 -0.86 -0.96 1.71 2.3 0.06
Bra018553 (LecRK-IV.4)
-1.21 -0.01 0.69 0.06 -0.12 0.19 -0.28 -1.0 -1.58 -1.28 -1.4 -0.35 -0.94 0.74 1.6 -0.73 -0.52 -0.32 -1.14 -1.86 -1.49 -0.77 1.47 -0.51 -0.19 1.27 0.18 -0.11 -0.13 1.08 -0.38
-1.66 -1.71 0.26 -0.64 0.49 -0.19 -0.62 -1.47 -0.48 -1.3 -1.0 -0.87 -2.0 0.63 0.73 -0.45 -1.53 1.6 0.34 0.33 0.02 -0.15 -2.38 -0.05 -0.48 1.21 -0.46 -0.42 1.3 1.31 -1.08
- - - - - - - - - - - - - - - - - - - - - - - - - 4.03 - - 3.87 - -
- - -2.05 -1.46 -1.82 - - -1.8 - - - - -0.56 - - - - - - -1.67 -0.71 - 0.65 - - 0.18 - - 3.24 3.95 -0.67
Bra019382 (BTL10)
0.54 0.19 1.1 0.19 0.93 0.07 -1.28 -1.3 -0.97 -0.99 -1.36 -1.36 -1.46 -0.5 -0.16 -0.76 -0.66 0.82 -0.62 -0.77 -1.37 -0.47 1.73 -0.72 -0.83 -0.05 -0.98 -0.14 0.91 1.49 -0.52
Bra019777 (DDF1)
- - 1.52 1.18 - - - - - - - - - - -1.46 - - -0.41 - - - - - - - 2.86 - -1.51 3.37 2.74 -2.52
Bra020179 (CAF1b)
-0.43 0.02 1.0 -0.57 -0.64 -1.2 -1.42 -1.07 -0.51 -0.32 -0.59 -0.26 -1.45 0.02 0.52 -0.51 -0.83 0.44 -0.41 -0.34 -0.66 -0.44 1.67 -0.91 -0.97 0.02 -0.67 -0.63 1.28 1.73 0.04
Bra021965 (CYP707A3)
0.66 0.55 2.03 1.02 -1.33 -3.66 -3.91 -4.58 -3.22 -3.18 -2.76 -2.73 -3.07 -2.12 -2.66 -3.14 -1.52 -1.76 -3.78 -3.57 -4.9 -2.88 -0.32 -4.48 -2.73 3.01 -4.29 -2.78 1.12 2.93 -3.58
Bra022437 (CPL5)
-1.55 -2.64 1.51 -0.09 -1.08 -1.02 -1.85 -2.99 -2.07 -1.58 -2.49 -2.19 -2.06 -2.62 -0.91 -1.15 -2.94 -1.89 -1.27 -0.44 -2.13 -1.56 2.58 -0.17 -0.58 0.3 -0.67 -0.75 2.18 2.35 0.32
Bra022772 (AP2C1)
-0.09 -0.27 1.17 0.28 -0.14 -0.54 -1.66 -1.33 -1.74 -1.47 -1.65 -1.27 -0.66 -0.97 -0.44 -1.01 -1.26 0.16 -1.03 -1.19 -1.56 -1.28 2.27 -0.97 -1.22 1.21 -1.2 -1.0 1.25 2.13 -0.51
Bra022981 (JAZ7)
-2.81 -1.81 0.55 -0.04 0.84 0.31 - -1.51 -1.09 -1.31 -1.4 -2.99 -1.63 - 1.34 -0.18 -0.8 1.37 - - - -2.83 1.03 0.61 -1.97 2.15 - -1.26 2.13 1.09 0.25
-0.06 0.05 0.34 -0.0 0.09 0.18 -0.58 -0.51 0.09 -0.27 -0.31 -0.18 -1.37 -0.0 0.28 -0.53 -0.81 -0.33 -0.32 -0.43 -0.41 -0.25 0.38 0.09 -0.03 0.37 0.22 0.31 0.72 0.88 0.34
-1.38 -0.34 0.24 -0.44 0.42 -0.53 -1.87 -1.4 -0.27 -0.4 -0.53 -0.09 -1.27 0.34 0.8 -0.04 -1.17 -0.16 -0.58 -0.74 -1.39 -0.34 0.33 0.22 0.08 0.42 0.25 -0.3 1.45 1.65 0.18
Bra025917 (NUDT4)
0.93 1.53 2.31 1.9 -1.43 -1.56 -1.26 -0.4 -1.94 -1.78 -1.41 -1.28 -0.48 -2.51 -3.3 -1.2 -2.03 -2.3 -2.71 -1.4 -1.72 -0.93 0.22 -2.96 -2.07 1.06 -1.75 -1.08 1.26 1.87 -0.75
-1.36 -0.47 0.18 0.48 -0.26 0.05 -1.75 -1.32 -1.16 -0.83 -0.74 -1.05 -0.79 0.84 0.38 0.1 0.31 0.76 -0.83 0.36 -0.05 -0.99 0.92 -0.91 -0.06 1.09 -0.02 -0.24 0.34 0.71 0.54
Bra026770 (SHN1)
- - - - - - - - - - - - - - - - - - - - - - - 3.27 - 3.75 - - 2.98 - -
Bra026963 (DDF1)
-1.5 -0.49 1.27 0.53 - - - - - - - - - - - - - - - - 1.65 - 0.51 - - 3.4 - - 3.0 1.58 -
-1.67 -1.47 0.77 0.26 0.39 0.42 -0.18 -1.54 -0.35 -0.0 -0.19 -0.82 -1.92 -0.62 -0.25 0.2 -0.99 -0.69 0.41 0.46 0.32 -0.01 0.18 0.23 -0.28 0.08 -0.19 0.27 1.4 0.9 -0.86
Bra027602 (CYP707A3)
1.08 1.23 2.99 2.23 -2.86 -1.38 -2.18 -3.82 -4.87 -2.53 -4.82 -3.73 -2.22 -1.93 -1.6 -3.1 -6.75 -1.14 -3.23 -3.14 -3.79 -3.3 0.49 -5.9 -2.56 2.48 -3.44 -4.97 -0.9 1.64 -4.24
Bra028290 (CBF4)
-3.25 -3.75 2.1 1.53 -3.61 -3.57 -3.26 - -2.98 -3.24 -4.34 -4.26 - -2.13 -0.86 -1.94 - -0.3 - -2.75 - -4.29 -1.19 - - 1.92 - -3.25 2.43 3.49 -4.99
-1.99 -1.96 1.05 2.27 -2.26 - - -1.69 -4.08 -2.93 -2.86 -1.04 0.47 - -3.44 -0.22 -0.95 0.26 -1.05 -2.28 -3.0 -1.42 1.2 -3.91 - 2.96 - -2.73 1.63 1.72 -1.7
-0.51 0.19 0.09 0.27 0.56 0.4 -0.05 -0.65 -0.35 -0.69 -0.67 0.48 -0.67 -0.03 -0.84 -0.44 -0.62 -1.33 -0.95 -0.53 -0.6 -0.64 -0.02 0.31 0.38 0.68 0.12 0.31 0.83 1.28 -0.09
Bra029258 (MYB96)
0.27 0.0 1.13 0.11 0.7 0.48 -1.0 -0.7 -0.23 -0.46 -0.25 -0.45 -0.92 -0.26 -0.7 -0.42 -0.46 -0.3 -0.39 -0.29 -0.97 -0.44 0.23 -0.26 0.0 1.08 -0.27 -0.54 0.52 0.99 0.12
-0.67 0.59 1.93 1.65 -0.79 1.33 -1.77 -0.95 -0.76 -0.53 -1.96 -0.69 - -0.94 -0.04 -0.7 -0.69 -3.08 0.38 -0.71 -0.46 0.29 -3.94 0.09 -0.02 0.22 -0.02 -2.36 1.09 0.44 0.24
Bra030957 (ERF8)
0.5 -0.47 0.82 -0.28 0.61 -0.25 -1.72 -1.29 -0.28 -1.95 -1.65 -0.67 -1.33 0.73 1.68 -0.43 -1.27 -0.34 -0.7 -0.96 -0.88 -1.11 1.24 -0.22 -0.69 0.86 -0.39 -0.38 1.13 1.0 -1.09
Bra031048 (B1L)
-0.61 -0.6 0.7 0.02 0.5 -0.21 -1.29 -0.68 -0.95 -1.14 -1.26 -0.54 -1.05 0.68 0.33 -0.75 -1.1 1.03 0.02 -1.2 -0.5 -1.3 0.82 -0.4 -0.69 0.68 -0.63 0.23 1.46 1.37 -0.39
Bra033324 (DTA1)
-0.17 1.02 2.28 1.63 -1.01 -0.69 -3.38 -4.09 -0.17 -2.05 -2.09 -0.78 -1.63 -2.11 -3.46 -2.26 -2.08 -2.11 -1.34 -0.63 -4.28 -3.42 1.39 -1.43 -2.27 1.67 -1.7 -2.6 1.92 1.85 -2.8
Bra033430 (PUB22)
-0.47 -0.38 2.57 0.3 -0.05 0.96 -2.36 -2.69 0.01 0.32 0.42 -0.01 -3.67 -0.57 0.03 -3.56 -0.32 -1.89 -0.87 0.13 -0.87 0.95 -1.46 -1.6 -2.01 -2.63 -3.65 -0.48 1.58 0.85 -0.42
Bra034216 (CTL18)
0.0 1.04 2.16 1.49 -0.04 1.29 -1.11 -0.57 -1.19 -0.03 -0.76 -1.49 -3.36 - -0.1 -0.47 -3.3 -1.12 -0.2 -0.13 -1.46 0.77 -2.86 -1.0 -0.06 -1.42 0.53 -1.18 0.66 0.47 -0.43
Bra035002 (CAF1a)
0.6 0.64 1.62 0.67 0.56 -0.04 -2.3 -2.74 -1.56 -1.59 -1.36 -1.5 -3.17 -0.31 -0.64 -1.31 -2.04 -1.66 -1.53 -0.74 -1.65 -0.77 0.85 -1.39 -1.6 1.74 -1.76 -0.13 1.33 2.2 -0.98
Bra035236 (ACS6)
-0.36 -0.33 0.42 -0.16 0.31 0.23 -0.38 0.02 0.3 -0.12 -0.13 0.08 -0.73 0.23 -0.23 -0.6 -0.54 -0.82 0.12 -0.21 -0.09 -0.06 -0.68 -0.25 -0.33 0.74 -0.36 0.11 0.69 1.19 -0.34
Bra035732 (ERF105)
1.52 1.4 2.51 1.12 -0.12 -0.69 -3.75 -3.73 -2.5 -2.18 -2.24 -2.45 -4.09 -0.9 -1.12 -1.51 -2.84 -1.16 -2.26 -0.46 -2.07 -0.89 -0.74 -1.58 -2.4 1.82 -2.29 -1.73 0.43 2.14 -0.93
0.54 0.78 2.27 1.67 -0.53 -2.75 -1.79 -1.55 -2.67 -0.94 -1.81 -1.93 -1.59 -1.53 -3.43 -1.05 -2.01 -0.59 -1.31 -1.17 -4.01 -1.69 1.86 -0.4 -1.68 1.93 -1.64 -1.05 0.49 1.42 -1.44
Bra039058 (GolS8)
0.23 0.65 2.07 0.52 -0.19 -1.56 -4.24 -2.09 -2.47 -1.17 -2.46 -1.3 -1.02 -1.03 -2.5 -1.11 -1.42 -0.26 -2.05 -1.48 -2.41 -1.06 2.25 -1.92 -2.74 0.92 -1.72 -1.04 1.26 2.37 -1.37
Bra040158 (ERF6)
-0.27 0.34 -0.65 0.03 0.64 0.03 -1.46 -1.86 -0.87 -0.47 -0.31 -0.38 -0.96 -0.36 -0.44 -0.61 -1.09 -0.94 -0.67 -0.65 -0.98 -0.12 0.47 0.47 -0.07 1.01 -0.18 -0.16 1.28 1.68 0.72

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.