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Heatmap: Cluster_149 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra001588 (ERF4)
 12.93 8.84 21.43 10.34 40.52 48.76 13.91 9.99 19.97 17.65 15.28 13.77 13.52 45.23 56.35 27.22 23.85 19.0 28.18 31.46 22.26 26.54 44.02 29.37 22.12 15.77 21.68 31.75 54.83 46.84 23.13
Bra002400 (CAF1b)
 0.7 1.02 4.75 1.2 1.27 0.57 0.3 0.45 0.56 0.48 0.7 0.74 0.96 1.04 0.92 0.93 0.45 0.87 0.98 1.27 0.79 0.51 2.34 0.74 0.28 1.37 0.57 0.81 5.89 5.28 1.08
Bra004165 (TCH2)
 2.92 3.02 8.53 5.96 15.07 9.72 6.84 5.34 8.7 8.44 8.66 7.67 8.88 19.73 12.31 9.61 8.21 10.19 7.86 11.86 6.41 8.88 35.3 10.78 10.99 25.19 6.94 14.35 23.27 23.53 14.11
11.09 13.56 24.59 18.99 17.36 13.97 6.02 8.34 15.55 12.42 10.82 9.75 15.87 23.61 34.55 12.64 11.03 43.96 13.82 14.65 15.82 11.05 29.21 16.05 11.94 23.92 14.54 17.35 36.74 39.28 22.41
11.7 13.77 16.11 11.92 11.37 8.49 6.03 5.53 5.82 7.98 7.13 7.88 6.43 5.19 7.26 7.91 7.98 9.88 7.92 9.38 7.49 8.89 12.03 6.59 8.23 14.27 8.33 8.8 9.27 17.86 10.21
0.15 0.0 2.0 0.27 0.0 0.0 0.0 0.0 0.0 0.07 0.0 0.0 0.02 0.03 0.02 0.0 0.0 0.19 0.0 0.0 0.0 0.04 0.47 0.0 0.03 0.09 0.0 0.09 0.46 0.63 0.05
0.84 0.9 5.7 0.44 0.13 1.27 0.09 0.02 0.0 0.13 0.12 0.0 0.0 0.07 0.24 0.02 0.02 0.0 0.27 0.0 0.36 0.12 1.08 0.9 0.65 4.59 0.47 1.31 4.68 5.84 0.92
Bra006696 (EXO70H7)
 3.39 2.92 4.26 3.44 4.0 2.88 1.65 1.6 1.73 1.52 2.2 1.55 1.31 1.74 2.08 0.9 1.51 1.81 1.4 1.7 1.73 1.04 2.04 1.74 2.06 4.7 1.81 3.22 4.23 3.85 0.82
Bra006925 (PUB22)
 0.94 1.47 4.66 1.64 0.57 1.59 0.35 0.3 0.23 0.33 0.65 0.42 0.08 0.05 0.13 0.26 0.48 0.13 0.45 0.76 0.7 0.4 1.17 1.24 1.44 4.22 1.45 1.65 5.69 7.58 1.4
Bra007202 (CCR3)
 2.26 5.37 6.24 4.03 4.52 4.2 2.58 1.93 3.99 4.22 3.74 4.35 3.78 7.03 4.52 3.92 3.64 3.67 3.11 3.94 3.62 3.76 8.93 3.44 3.71 9.87 4.21 4.12 6.23 9.13 3.51
Bra007205 (SZF1)
 19.76 25.43 40.51 21.66 21.17 20.83 4.73 3.14 6.62 7.75 6.47 6.38 5.18 22.17 17.21 12.33 8.34 13.7 6.93 10.9 7.23 11.66 85.01 9.43 7.58 66.88 7.44 14.94 36.49 63.16 7.8
Bra008101 (NUDT21)
 5.43 3.55 22.62 9.39 4.57 3.8 1.42 2.62 3.24 2.71 2.17 2.38 1.97 1.33 5.74 2.96 0.5 3.04 3.06 7.93 1.69 0.48 3.98 4.33 1.1 7.15 0.62 4.35 27.21 33.36 5.12
0.51 0.19 2.08 1.05 0.0 0.21 0.01 0.49 0.0 0.79 0.14 0.0 0.0 0.23 0.29 0.0 0.03 1.22 1.82 0.62 0.43 0.0 1.34 0.44 0.85 2.47 0.09 0.3 1.44 2.03 0.32
Bra009726 (AtFDA19)
 0.02 0.0 0.5 0.06 0.02 0.02 0.03 0.0 0.0 0.0 0.05 0.0 0.05 0.09 0.02 0.09 0.0 0.33 0.04 0.0 0.0 0.0 0.72 0.04 0.16 0.4 0.16 0.25 0.86 1.39 0.57
7.39 1.75 16.93 15.26 2.76 0.8 0.96 1.45 0.0 1.08 0.49 0.0 1.2 0.0 0.4 3.55 0.0 6.91 1.11 4.99 0.65 0.0 18.43 0.6 3.57 26.31 0.0 0.34 28.86 45.24 4.0
66.65 71.75 224.41 170.28 59.1 35.02 20.12 16.9 11.37 15.41 14.57 7.54 3.82 6.13 4.29 11.23 6.05 38.19 20.78 20.11 12.28 22.77 33.17 14.01 10.77 61.25 6.54 12.66 93.7 175.18 30.34
Bra010880 (ERF11)
 1.78 2.04 6.95 1.57 11.44 9.21 3.12 1.75 3.86 2.69 2.51 2.18 2.82 11.3 14.71 4.36 1.6 7.94 4.98 5.24 2.78 3.52 19.5 4.2 2.42 7.21 1.61 7.71 19.45 17.08 3.11
Bra012803 (PUB22)
 0.06 0.08 0.7 0.6 0.04 0.07 0.08 0.03 0.07 0.08 0.11 0.03 0.26 0.12 0.16 0.07 0.05 0.07 0.12 0.15 0.08 0.06 0.16 0.26 0.08 0.06 0.14 0.11 0.54 0.74 0.1
Bra012910 (MYB77)
 3.37 2.5 9.06 11.24 5.28 1.4 0.11 0.35 0.87 2.17 1.16 0.44 0.68 2.21 0.68 1.28 0.9 5.7 0.59 1.02 0.87 0.83 11.71 0.58 0.54 19.8 0.49 1.33 4.03 26.23 2.39
Bra012938 (ERF104)
 19.14 31.11 46.6 28.34 5.35 3.53 0.73 1.19 1.39 2.45 2.67 2.48 0.42 2.12 1.45 1.32 1.27 2.4 1.57 2.37 1.26 3.35 11.4 1.41 1.1 18.94 1.96 3.34 10.19 31.88 2.7
14.78 15.48 30.0 21.89 15.13 19.52 6.22 6.46 10.65 6.64 13.31 14.13 6.25 8.66 10.38 13.12 10.25 5.41 7.5 19.88 8.4 15.01 11.3 9.83 13.17 21.56 11.56 11.45 33.62 39.13 14.43
Bra016495 (PUP14)
 6.87 8.1 16.79 8.31 2.5 0.43 0.41 0.48 0.5 0.37 0.66 1.08 0.17 0.63 0.44 0.44 0.52 1.73 0.78 0.55 0.26 0.64 6.45 1.1 1.12 5.33 1.31 1.74 4.49 7.21 1.41
Bra016686 (BPC2)
 6.67 9.23 10.8 11.56 6.37 3.7 4.56 6.32 4.17 4.55 5.4 6.2 6.06 5.66 5.04 5.64 4.83 7.23 4.44 4.35 4.57 4.81 8.14 6.19 5.9 9.65 5.08 4.6 4.94 8.16 5.87
Bra016763 (DDF1)
 0.14 0.08 2.43 1.2 0.04 0.04 0.0 0.08 0.0 0.04 0.0 0.0 0.0 0.03 0.0 0.08 0.0 0.0 0.12 0.41 0.02 0.0 0.38 0.02 0.13 3.62 0.04 0.29 4.77 2.31 0.1
1.39 1.96 5.0 1.58 0.94 2.44 2.06 1.67 1.41 2.43 1.38 1.98 2.48 0.23 1.39 2.39 2.18 6.29 2.99 2.16 1.99 2.14 2.13 3.06 2.95 4.18 1.24 1.59 4.85 7.42 2.34
Bra018346 (AP2C1)
 0.73 1.05 3.71 1.2 0.98 1.39 0.62 0.57 0.47 1.07 0.78 0.68 2.71 0.44 1.2 1.2 1.25 1.69 0.71 0.93 0.59 1.43 11.69 1.08 1.1 2.69 1.12 1.05 6.62 10.01 2.11
Bra018553 (LecRK-IV.4)
 0.43 0.99 1.6 1.03 0.91 1.13 0.82 0.5 0.33 0.41 0.38 0.78 0.52 1.65 3.0 0.6 0.69 0.79 0.45 0.27 0.35 0.58 2.74 0.7 0.87 2.38 1.12 0.92 0.91 2.1 0.76
19.62 18.97 74.43 40.01 87.45 54.47 40.55 22.52 44.67 25.32 31.19 34.08 15.52 95.98 102.9 45.41 21.62 188.65 78.9 78.08 63.06 56.17 12.0 60.14 44.61 144.1 45.16 46.5 153.49 154.16 29.39
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.25 0.0 0.0 1.12 0.0 0.0
0.0 0.0 0.03 0.05 0.04 0.0 0.0 0.04 0.0 0.0 0.0 0.0 0.09 0.0 0.0 0.0 0.0 0.0 0.0 0.04 0.08 0.0 0.21 0.0 0.0 0.15 0.0 0.0 1.25 2.03 0.08
Bra019382 (BTL10)
 7.5 5.88 11.01 5.85 9.81 5.38 2.11 2.08 2.62 2.58 2.01 2.01 1.87 3.65 4.6 3.03 3.25 9.11 3.34 3.01 1.99 3.71 17.06 3.12 2.9 4.98 2.61 4.68 9.68 14.46 3.58
Bra019777 (DDF1)
 0.0 0.0 0.38 0.3 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.05 0.0 0.0 0.1 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.96 0.0 0.05 1.37 0.89 0.02
Bra020179 (CAF1b)
 3.51 4.79 9.47 3.18 3.04 2.06 1.77 2.25 3.33 3.8 3.13 3.97 1.74 4.81 6.78 3.32 2.66 6.43 3.57 3.73 2.99 3.49 15.1 2.52 2.42 4.8 2.98 3.05 11.48 15.69 4.87
Bra021965 (CYP707A3)
 1.42 1.32 3.66 1.81 0.36 0.07 0.06 0.04 0.1 0.1 0.13 0.14 0.11 0.21 0.14 0.1 0.31 0.26 0.07 0.08 0.03 0.12 0.72 0.04 0.14 7.25 0.05 0.13 1.96 6.85 0.08
Bra022437 (CPL5)
 0.64 0.3 5.33 1.76 0.89 0.92 0.52 0.24 0.45 0.63 0.33 0.41 0.45 0.3 0.99 0.84 0.24 0.5 0.78 1.39 0.43 0.63 11.22 1.66 1.25 2.3 1.18 1.12 8.5 9.54 2.34
Bra022772 (AP2C1)
 4.26 3.78 10.21 5.53 4.11 3.13 1.44 1.81 1.36 1.64 1.45 1.89 2.87 2.33 3.35 2.26 1.9 5.06 2.23 1.99 1.55 1.87 21.95 2.32 1.96 10.51 1.98 2.27 10.81 19.97 3.19
Bra022981 (JAZ7)
 0.09 0.18 0.91 0.61 1.12 0.77 0.0 0.22 0.29 0.25 0.24 0.08 0.2 0.0 1.58 0.55 0.36 1.61 0.0 0.0 0.0 0.09 1.27 0.95 0.16 2.76 0.0 0.26 2.72 1.32 0.74
156.04 167.85 205.78 161.76 172.69 184.06 108.47 114.33 172.52 134.29 130.93 143.62 62.93 162.24 196.76 112.08 92.33 129.05 130.34 120.45 122.24 136.88 211.32 173.28 159.05 209.5 188.59 201.91 266.55 297.84 206.02
2.93 6.0 9.0 5.6 10.19 5.28 2.08 2.88 6.3 5.77 5.28 7.16 3.15 9.6 13.22 7.4 3.38 6.79 5.08 4.57 2.9 6.02 9.58 8.88 8.06 10.15 9.02 6.17 20.83 23.93 8.59
Bra025917 (NUDT4)
 5.84 8.86 15.18 11.45 1.14 1.04 1.28 2.33 0.8 0.89 1.16 1.27 2.2 0.54 0.31 1.34 0.75 0.62 0.47 1.16 0.93 1.61 3.58 0.39 0.73 6.37 0.91 1.45 7.36 11.21 1.83
0.26 0.49 0.76 0.94 0.56 0.7 0.2 0.27 0.3 0.38 0.4 0.32 0.39 1.2 0.87 0.72 0.83 1.14 0.38 0.86 0.65 0.34 1.27 0.36 0.65 1.44 0.66 0.57 0.85 1.1 0.98
Bra026770 (SHN1)
 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.08 0.0 0.11 0.0 0.0 0.07 0.0 0.0
Bra026963 (DDF1)
 0.03 0.05 0.18 0.11 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.24 0.0 0.11 0.0 0.0 0.8 0.0 0.0 0.61 0.23 0.0
5.06 5.82 27.56 19.39 21.21 21.68 14.23 5.55 12.65 16.1 14.2 9.12 4.28 10.53 13.61 18.58 8.13 10.0 21.51 22.24 20.19 16.04 18.28 18.93 13.33 17.09 14.15 19.49 42.7 30.13 8.88
Bra027602 (CYP707A3)
 1.59 1.76 5.98 3.52 0.1 0.29 0.17 0.05 0.03 0.13 0.03 0.06 0.16 0.2 0.25 0.09 0.01 0.34 0.08 0.09 0.05 0.08 1.05 0.01 0.13 4.18 0.07 0.02 0.4 2.35 0.04
Bra028290 (CBF4)
 0.07 0.05 2.87 1.93 0.05 0.06 0.07 0.0 0.08 0.07 0.03 0.03 0.0 0.15 0.37 0.17 0.0 0.54 0.0 0.1 0.0 0.03 0.29 0.0 0.0 2.53 0.0 0.07 3.61 7.5 0.02
0.06 0.06 0.52 1.22 0.05 0.0 0.0 0.08 0.01 0.03 0.03 0.12 0.35 0.0 0.02 0.22 0.13 0.3 0.12 0.05 0.03 0.09 0.58 0.02 0.0 1.96 0.0 0.04 0.78 0.83 0.08
3.23 5.26 4.91 5.58 6.77 6.09 4.44 2.95 3.62 2.86 2.9 6.41 2.89 4.51 2.57 3.4 3.0 1.84 2.39 3.19 3.03 2.96 4.56 5.7 5.98 7.36 5.01 5.72 8.19 11.2 4.34
Bra029258 (MYB96)
 1.96 1.62 3.53 1.75 2.63 2.26 0.81 1.0 1.38 1.17 1.37 1.19 0.86 1.35 1.0 1.21 1.18 1.32 1.23 1.32 0.83 1.2 1.89 1.35 1.62 3.43 1.34 1.11 2.32 3.21 1.76
0.09 0.22 0.55 0.46 0.08 0.37 0.04 0.08 0.09 0.1 0.04 0.09 0.0 0.08 0.14 0.09 0.09 0.02 0.19 0.09 0.11 0.18 0.01 0.16 0.14 0.17 0.14 0.03 0.31 0.2 0.17
Bra030957 (ERF8)
 6.31 3.24 7.87 3.67 6.83 3.75 1.36 1.83 3.7 1.16 1.43 2.82 1.78 7.41 14.31 3.32 1.86 3.54 2.75 2.3 2.44 2.07 10.58 3.84 2.77 8.13 3.41 3.44 9.77 8.95 2.11
Bra031048 (B1L)
 3.34 3.36 8.27 5.19 7.22 4.41 2.09 3.19 2.64 2.32 2.13 3.5 2.46 8.2 6.41 3.03 2.38 10.43 5.19 2.23 3.62 2.08 9.0 3.87 3.17 8.17 3.29 5.97 14.02 13.17 3.9
Bra033324 (DTA1)
 0.69 1.57 3.78 2.41 0.39 0.48 0.07 0.05 0.69 0.19 0.18 0.45 0.25 0.18 0.07 0.16 0.18 0.18 0.31 0.5 0.04 0.07 2.04 0.29 0.16 2.48 0.24 0.13 2.95 2.81 0.11
Bra033430 (PUB22)
 0.08 0.08 0.63 0.13 0.1 0.21 0.02 0.02 0.11 0.13 0.14 0.11 0.01 0.07 0.11 0.01 0.09 0.03 0.06 0.12 0.06 0.21 0.04 0.04 0.03 0.02 0.01 0.08 0.32 0.19 0.08
Bra034216 (CTL18)
 0.11 0.22 0.47 0.3 0.1 0.26 0.05 0.07 0.05 0.1 0.06 0.04 0.01 0.0 0.1 0.08 0.01 0.05 0.09 0.1 0.04 0.18 0.01 0.05 0.1 0.04 0.15 0.05 0.17 0.15 0.08
Bra035002 (CAF1a)
 27.27 28.07 55.21 28.77 26.6 17.49 3.66 2.69 6.11 5.97 7.01 6.36 2.0 14.5 11.55 7.26 4.4 5.72 6.24 10.78 5.73 10.6 32.6 6.88 5.93 60.15 5.31 16.44 45.46 82.89 9.12
Bra035236 (ACS6)
 29.87 30.45 51.32 34.2 47.43 45.04 29.42 38.69 47.05 35.28 34.99 40.44 23.06 44.9 32.75 25.24 26.27 21.64 41.75 33.19 36.02 36.73 23.84 32.27 30.43 63.74 29.93 41.41 61.79 87.63 30.29
Bra035732 (ERF105)
 21.51 19.76 42.49 16.28 6.9 4.63 0.56 0.56 1.32 1.65 1.58 1.37 0.44 4.01 3.45 2.63 1.05 3.34 1.56 5.44 1.78 4.04 4.48 2.5 1.41 26.41 1.53 2.25 10.04 32.91 3.92
4.52 5.34 14.97 9.9 2.15 0.46 0.9 1.06 0.49 1.62 0.88 0.82 1.03 1.07 0.29 1.5 0.77 2.07 1.25 1.38 0.19 0.96 11.26 2.35 0.97 11.82 1.0 1.5 4.37 8.3 1.15
Bra039058 (GolS8)
 1.29 1.74 4.63 1.58 0.97 0.38 0.06 0.26 0.2 0.49 0.2 0.45 0.54 0.54 0.2 0.51 0.41 0.92 0.27 0.4 0.21 0.53 5.25 0.29 0.17 2.09 0.34 0.54 2.65 5.72 0.43
Bra040158 (ERF6)
 1.22 1.87 0.94 1.51 2.31 1.51 0.54 0.41 0.81 1.07 1.2 1.14 0.76 1.15 1.09 0.97 0.69 0.77 0.93 0.94 0.75 1.36 2.04 2.04 1.41 2.98 1.31 1.33 3.58 4.75 2.44

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)