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Heatmap: Cluster_53 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
0.29 0.36 0.88 0.03 0.18 -0.06 -1.64 -1.03 -0.19 -0.23 -1.16 0.02 -0.16 -0.3 0.27 -0.62 -0.85 0.12 -0.11 -0.45 -0.29 0.03 1.28 0.02 0.25 0.15 -0.0 -0.35 0.19 0.26 -0.06
Bra001560 (CYP72A9)
 - - 3.74 - - 1.68 - 1.73 - - - - - - - - - - - - - - 2.81 - - - - - - - 2.03
0.4 0.62 0.21 -0.12 -0.02 0.32 -0.43 -1.73 -0.01 -0.19 -0.21 -0.14 -0.75 0.37 0.84 -0.52 -0.52 0.33 -0.05 -1.12 -0.1 -0.23 1.05 0.29 -0.36 -0.21 -0.6 0.07 -0.19 -0.33 0.36
- - 4.9 - - - - -3.71 - - -4.14 - - - - -3.71 - - - - -2.96 -1.76 - - -0.76 - - - - - -
- - 4.01 1.75 - - - 1.89 - - - - 1.97 - - 1.06 - - - - - - 0.86 - - - - - - - -
- - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Bra006705 (PUM19)
 - - 4.21 - - - - - - - 2.46 - 2.8 - - - - - - - - - - - - - - - - - -
- - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Bra008222 (GASA1)
 - - 4.11 2.59 - - - - - - - - - - - - - - - - - - - - - - - 2.95 - - -
- - 4.03 - - 2.27 - - - - - - - - - - - - - - - - - - - - 2.3 2.3 - - -
0.18 1.86 1.89 0.7 -1.67 -0.14 0.1 -0.47 -0.1 -0.93 -0.09 -0.64 -0.33 -3.35 -1.48 -1.1 -2.48 -1.75 -1.42 -0.6 -0.39 -0.35 2.51 -1.77 -2.7 -0.37 0.74 - - -0.55 -0.32
Bra010029 (BLOS2)
 -0.29 0.61 1.22 -0.38 0.29 0.14 -1.35 -1.21 -1.18 -0.59 0.07 -0.08 0.06 0.07 0.82 0.06 -0.91 -0.47 0.3 -1.65 -0.09 -0.17 1.49 0.41 -0.76 -0.1 -0.55 -0.27 0.04 -0.01 -0.78
-0.03 1.42 1.71 -0.05 -0.99 -0.34 -3.22 -6.16 -1.02 -0.78 -0.53 -1.27 -0.47 -2.4 -2.67 -0.97 -0.68 1.22 0.81 -0.52 -1.69 -1.54 2.22 -0.45 -0.67 -0.29 -0.86 0.11 -0.41 -0.15 0.83
Bra012302 (DD46)
 - - 3.11 - 1.2 - - 1.11 - - 2.18 - - - - - - - - - - - 3.74 - - - - - - - -
Bra012399 (NUDT10)
 1.05 0.02 2.62 - - -0.66 - -0.47 1.01 -0.72 -0.78 - 0.32 - - - - - - 1.13 - - 2.31 - - -0.52 0.4 - 0.76 1.31 1.41
Bra012686 (MVP17)
 - - 4.09 - - - - - - - - - - - - - - - - - 3.17 - - - - - - 2.31 - - -
1.15 0.98 3.16 1.94 1.07 2.82 - - -1.65 - - - - - - -1.56 -0.64 0.08 - - - - -0.76 - - - - - -0.65 - 0.37
Bra014781 (SANT4)
 - - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - 4.53 - - - - - - 2.98 - - - - - - - - - - - - - - - - - - - - -
- - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Bra018038 (THFS)
 - - 4.57 - 2.87 - - - - - - - - - - - - - - - - - - - - - - - - - -
- 2.5 1.86 -2.15 -0.84 0.04 -1.17 -0.99 -1.82 -1.86 -1.02 -2.44 -0.54 -1.0 0.05 0.32 -1.83 - 0.17 0.19 - 0.45 2.52 - -0.93 0.05 0.8 -0.94 -1.94 - -0.98
Bra018308 (LecRK-IX.1)
 - - 2.66 2.11 -0.35 1.89 -1.59 1.16 0.16 - - - 1.0 - - -1.27 -1.4 - - - 1.18 -1.53 - - - -0.15 - -0.29 -1.38 1.81 0.24
Bra020409 (MyoB12)
 - 2.91 2.56 1.31 - - - - - - - - - - - - - - 0.65 - - - 2.89 - - - - - 2.61 - -
Bra020552 (AGL36)
 - - 4.69 - - - - - - - - - - - - - - - - - - - - - - - - - 2.37 - -
Bra021507 (TMN7)
 - - 4.65 - - 1.49 - 1.66 - - - - - - - - - - - - - - - - - - - - - - -
Bra022825 (CLE6)
 1.67 0.66 4.37 1.29 - - - - - - - 0.68 - - - - - - 0.56 - - - - - - - - - - - -
Bra023701 (IPT5)
 - - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Bra023853 (NPY7)
 - - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Bra024944 (FL6)
 1.34 - 1.62 0.58 0.3 -2.99 -2.88 -3.27 - -1.82 -5.24 -2.49 -2.31 -0.35 -1.27 - -2.86 -3.57 -3.95 -2.41 -5.4 -2.79 2.44 0.72 0.86 0.68 0.17 0.46 0.9 1.3 1.31
- - 4.19 - - - - - - - - - - 1.99 - 3.13 - - - - - - - - - - - - - - -
Bra026943 (FRL1)
 0.89 0.17 3.99 2.15 -1.35 -3.06 0.38 - -3.25 -3.05 - 1.4 - - 0.18 -1.22 -1.95 - - -0.19 - - - - -2.77 - - -2.83 - - -
-0.7 -0.66 3.09 2.26 - - -0.08 -0.14 - - - - - -0.58 - - - 0.31 - - - - 1.87 - - 3.17 - - - - -
Bra028022 (NRT2.4)
 - - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - 4.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Bra029156 (RPL4)
 - - 3.96 - - - - - - - - - - - - - - - - - - - - - - 2.62 - - - 2.18 2.27
Bra029877 (PP1R3)
 - - 3.73 1.7 2.08 3.13 -1.06 - - -0.91 -1.01 - - - - - - - - - - - - - - - - - - - -
- - 4.2 - - 2.84 1.64 - - - - - - - - - - - - - - - 1.26 - - - - - - - -
Bra036505 (MTP5)
 1.66 - 3.8 3.12 - - - - - - - - 1.35 - - - - - - - - - - - - - - 1.43 - - -
Bra037392 (PYL7)
 2.09 1.67 2.2 0.92 -1.84 -0.36 -2.52 -2.4 - - - - -1.54 - -1.37 -0.92 - - - -3.8 - - 1.78 0.06 0.33 0.36 1.17 -0.22 0.26 0.18 0.91
Bra037886 (GNT2)
 - 1.74 3.68 - - 0.9 - - - - - - - - 2.25 1.57 - - - - - - - 0.69 - - 0.76 0.97 - - -
Bra038376 (SINE2)
 - 1.89 4.09 1.93 - 1.52 - - - - - - - 1.83 - - - - - - - - - - - - - - - - -
Bra038414 (SDT)
 - - 2.25 - -0.11 - -1.33 1.73 0.76 0.5 - -1.19 -0.86 - 0.13 -0.89 - 1.61 0.47 0.02 - -0.07 2.76 - - - - -0.72 - 0.6 -0.79
Bra038820 (PP1R3)
 - - 3.58 0.02 2.09 1.6 0.85 - - - - - - - - -1.21 - -1.47 - - - - 1.22 - - - - 2.03 -0.22 -0.21 -
Bra038902 (TMT3)
 0.97 1.97 2.82 - - - - - 0.63 - - - - - - - - - - - 1.59 1.96 2.6 - - - - - - - 1.83
Bra039568 (FOL2)
 - - 4.77 1.87 - - - - - - - - - - - - - - - - - - - - - - - - - - -
- 1.89 4.37 2.66 -1.63 - - - - - - - - - - - - - - - - - - - - - - - - - -
Bra040622 (RIK)
 -0.28 0.95 1.76 -0.1 -2.0 -0.36 -0.98 0.07 -2.84 -1.73 -2.21 -2.31 -2.48 -0.39 -0.42 1.26 -2.49 - -2.15 -3.61 -0.75 - 1.58 0.43 -0.56 0.79 0.8 1.15 0.67 -0.09 1.06
Bra040912 (COST4)
 - - 4.03 2.45 - - - - - - - - - - - 0.73 - - 2.22 - 1.53 - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.