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Heatmap: Cluster_76 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000248 (MRI)
 - - - - - 1.11 - - - 3.7 - - - - - - - - - - 2.73 - - - - - - - - 3.2 -
- - - - 0.46 - - 1.85 2.25 2.37 - 0.49 1.75 - - 1.57 3.06 - - - - - - - - - - - - - -
1.31 - - - - 1.14 - - - 3.47 - - - - - - - 2.69 - 1.24 - - 2.12 - - - - - - 1.04 -
- - - - - - - - - 3.68 - - - - - - - - - - - - - - - - - 3.5 - 1.75 1.81
- - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - -
-1.72 -2.18 -0.74 -2.11 -0.38 -1.79 -1.01 -1.03 -0.58 1.66 -0.24 -3.76 1.46 -2.58 -2.38 1.81 -0.32 -2.12 -2.33 0.82 1.16 -0.22 -1.53 0.34 0.66 0.5 0.63 0.23 0.07 -0.1 -0.27
Bra005308 (ATL16)
 -0.31 - - - - - - -1.68 - 0.93 1.17 -0.67 0.04 -0.35 - 1.16 1.61 -1.43 - -1.6 0.37 0.84 - 0.14 1.83 -1.31 1.25 0.57 1.61 0.48 -0.24
Bra005343 (ATL28)
 - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - -
Bra007075 (LNK2)
 - - - - - 2.56 - - - 3.61 - - - - - - 3.69 - - - - - - - - - - - - - -
Bra008514 (JLO)
 0.04 - -0.83 -0.55 0.4 -0.18 0.23 -1.14 -1.03 1.61 0.2 -0.63 -0.43 0.27 0.77 0.26 -0.06 -0.69 -0.4 -2.38 -0.69 0.03 0.39 1.15 0.66 -1.09 0.27 -0.04 -0.71 -0.07 0.27
Bra008648 (RAD23C)
 - - - - - - - - - 4.71 - - - - - - 2.27 - - - - - - - - - - - - - -
Bra009049 (ANN6)
 - - - - 2.5 - - - - 3.35 2.15 - 2.56 - - - - 2.27 - - - - - - - - - - - - -
- - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - -
Bra010093 (BEH4)
 - 1.16 - 2.18 - - 0.52 - - 3.37 1.68 1.81 - - 1.08 - - - - - - - 0.86 - - - - - - - 0.89
Bra010799 (TWD40-2)
 0.77 - 2.46 0.38 - - - 1.2 0.31 2.7 - 1.05 - - - 1.87 - 1.35 - -0.11 -1.1 - - - - - - - - 1.48 -
1.73 0.89 - 1.92 - 0.73 0.35 - - - -0.45 0.52 - - -0.08 0.4 -1.81 -0.77 -0.28 - 1.62 0.87 0.73 0.63 0.67 0.84 -1.88 -1.61 - -0.77 -1.66
Bra012579 (MYB98)
 - - - - 2.17 - - - - 3.11 - - 2.31 - - - - 3.03 2.25 - - - - - - - - - - - -
Bra012589 (FDM5)
 - - - - - -0.1 0.05 - 1.47 2.33 -0.79 - 2.21 0.17 - 2.5 1.5 1.06 -0.17 -1.59 0.69 -0.23 - - - - -1.7 - -1.58 - -
Bra012893 (UGT72E1)
 - - - - - - - 2.55 - 4.3 - - 2.43 - - - - - - - - - - - - - - - - - -
Bra013062 (HY2)
 - -1.44 - 1.18 - 0.7 -1.76 -1.43 -0.73 2.08 0.31 0.27 - 0.78 -1.05 - 1.68 -0.09 0.59 - -0.55 1.37 -0.48 - 0.21 0.09 -1.44 1.02 -0.58 -1.56 0.44
1.39 -0.71 0.4 -1.21 0.5 0.12 -1.2 -0.24 -2.16 1.08 0.71 0.32 0.81 0.92 -1.08 0.03 -1.33 0.18 -2.85 - -2.01 -1.06 -0.97 0.5 1.32 0.47 -1.42 0.38 -1.29 -0.36 -0.3
- - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - -
Bra014142 (ASAT1)
 - -0.63 - - 0.59 1.66 1.33 - -0.11 2.49 -1.04 0.79 - - 0.89 0.15 - - - 0.58 - - -1.02 2.04 -1.06 - 1.5 - - 1.03 -
Bra014668 (DPBF3)
 - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - -
Bra014872 (PFK6)
 - - - - - - - - - 4.27 - - - - - - - - - - - - - - - - - - - 3.55 -
1.48 - 2.04 - 0.83 - 0.63 0.43 1.11 2.24 -0.85 - - - - 0.46 2.15 - -0.79 1.34 - - 0.82 - - - -0.59 - - -0.7 -
- - - - 2.04 - - 0.26 1.15 2.26 - 0.28 - - 0.81 2.58 - 1.95 0.42 0.53 - - - - - - - 0.68 - 0.59 -
Bra017255 (SAUR45)
 - - - - - - - - - 4.4 - - - - - - - - - - - - - - - - - - - 3.3 -
Bra017885 (ZIG)
 - - - - - - - - - 4.23 - - - - - - - - - - - - - - - 3.61 - - - - -
-0.48 -1.09 -0.81 0.32 -0.91 -1.26 0.13 -0.25 0.84 1.34 1.4 0.23 1.26 0.08 0.32 1.28 -0.61 1.16 0.02 -0.59 1.6 -2.29 - - -1.26 -1.55 -0.64 -1.56 -3.69 -2.74 -3.54
0.56 - - 0.09 -1.05 0.75 -0.71 0.91 -3.31 2.72 - -1.65 -1.19 1.28 -0.07 -3.21 1.2 -3.17 1.19 -2.32 0.61 -3.36 -1.35 -1.11 -2.22 -3.45 -2.25 0.24 0.3 0.63 0.05
- 0.28 1.35 - 1.6 - - 0.14 1.3 3.21 2.27 - - - 0.07 - - - 1.02 - -0.24 -0.28 -0.14 - - - -0.15 - - - -
Bra019419 (PA200)
 - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - -
Bra019844 (ADH)
 - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - -
Bra020048 (GEF10)
 - - 0.99 - 0.74 - - - - 3.27 2.32 1.68 1.88 - 1.96 - - - - - - - - - - - - - - - 0.96
-1.37 -0.19 -2.68 -0.77 1.34 0.08 -0.36 -0.41 -0.71 0.83 1.39 0.5 0.99 0.97 0.93 0.35 0.13 0.57 -0.81 0.51 -1.81 -0.32 0.32 - -3.77 -2.11 -0.0 -0.74 0.11 - -1.28
Bra020384 (SVL4)
 1.67 - - - - - - - - 2.63 -0.32 - - 0.94 - 2.16 - - - 0.69 - - 2.27 2.21 - -0.41 - - - -0.28 0.87
Bra020691 (CIB2)
 -0.99 0.55 0.46 -1.2 -1.28 -1.43 0.52 0.55 -1.03 1.16 -0.49 -2.06 1.73 - -0.4 1.9 1.35 1.6 0.79 0.19 -0.13 -0.95 -0.84 -2.58 - - -2.28 - -1.23 -2.25 -0.71
- 0.34 1.53 1.31 1.72 - 0.27 - - 1.9 - - 2.55 - -0.65 -0.36 1.26 - - - - - 0.56 - 0.51 1.83 - - - - -
- - - - - - - - - 2.29 - - - - 1.62 - 1.39 1.79 - 1.36 1.77 0.29 - - 0.32 - - 3.09 - - -
- - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - 4.35 - - - - - - - - - - - - 3.41 - - - - - - - -
Bra025919 (LTPG3)
 - 0.41 0.67 - - 0.92 - -0.07 -0.2 2.37 - - - - 2.42 0.9 0.78 0.06 -0.72 - 0.49 2.59 0.21 - - - - - - - -
0.52 0.81 0.67 0.3 -1.23 -1.25 0.02 0.05 -1.53 1.06 0.37 0.24 1.08 -1.03 -0.9 -0.38 -0.24 -0.05 -0.84 0.43 -0.37 -1.81 -0.09 -0.04 -0.39 -0.09 -0.95 -0.56 0.15 0.41 0.35
- - - - - 0.35 - - - 2.95 - 2.63 - - - - - - - 1.42 - - 3.37 0.36 - - - 0.56 - - -
- - -3.01 -0.39 -2.65 -1.82 0.09 - - 3.25 - 3.66 - - - 2.7 - - - - - - - - - - - - - - -
-0.14 -0.1 0.63 -1.5 1.86 1.73 0.05 - -1.55 1.36 -0.4 0.53 0.46 - 0.07 - 1.54 0.52 0.44 - - - 0.2 - -0.24 -1.46 -0.26 0.31 -0.25 -0.35 -
Bra029115 (HCF106)
 - - - - - 2.86 - - - 3.85 - 3.22 - - - - - - - - - - - - - - - - - - -
- -0.69 -0.07 0.69 0.92 -0.26 -0.8 0.25 1.3 0.84 -0.27 0.1 0.73 0.11 1.2 0.3 -0.14 0.43 -1.52 -0.52 -0.63 -1.93 0.52 0.33 0.18 - -0.71 -3.25 -0.99 -0.5 -0.07
Bra029591 (SINE3)
 -1.13 0.42 -1.23 0.06 0.56 - - - 0.76 2.25 1.29 -1.41 2.07 - - - - -1.22 0.06 - 0.47 - -1.37 1.21 -0.48 0.82 - -0.17 -1.27 0.87 0.68
-0.12 -0.2 -0.2 -0.89 0.59 -0.39 -0.49 0.05 -0.56 -0.46 -0.15 0.09 0.54 -0.36 0.01 0.37 -0.3 -0.32 -0.3 0.11 0.22 -0.19 0.01 0.32 0.32 0.17 0.35 0.37 -0.14 0.22 0.09
- - 0.78 - 1.93 - - - 2.37 2.93 - - - - 2.79 - - - - - - - 2.53 - - - - - - - -
- - - - - - - 3.26 - 4.42 - - - - - - - - - - - - - - - - - - - - -
Bra031311 (UGT71B6)
 - 2.79 - 2.81 - - - - - 2.48 - - - - - - - - - - 2.53 - - - - - - - - 2.51 -
- - - - - - - 0.73 0.58 1.76 0.8 0.78 - - - 1.02 - 1.99 0.67 1.8 3.31 - - - - - - - - - -
Bra033219 (FUS5)
 -4.54 -1.93 -2.97 -0.66 -0.05 0.5 0.76 -0.79 -0.97 1.31 -0.61 -0.22 -0.01 0.21 1.8 1.74 -0.89 0.96 -1.96 -0.31 0.11 - 1.1 0.09 -0.72 -2.42 -0.39 -0.52 -0.65 -1.29 -0.57
Bra033798 (PAA2)
 - - - - - - - - - 2.98 0.57 - - - - 2.36 2.63 - - -0.4 - -0.49 - - 1.21 - 1.26 - - - 2.04
Bra037269 (GLDP2)
 -0.87 2.49 -1.92 1.2 2.64 -1.1 -0.33 - - 2.74 1.85 -0.35 -0.88 - 0.57 0.48 - - -1.91 - - - - - - - - - - - -
Bra038187 (MLH1)
 - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - - - - -
Bra038684 (MyoB8)
 0.01 0.16 0.23 0.01 0.22 -0.01 -0.39 -0.2 -0.23 0.07 0.1 -0.1 0.36 -0.18 0.22 0.19 -0.01 -0.24 -0.24 -0.17 -0.08 0.24 0.14 -0.01 -0.13 0.1 -0.12 0.03 -0.44 0.06 0.04

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.