Heatmap: Cluster_91 (Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	Light: 260 uE m-2 s-1	Light: 195 uE m-2 s-1	Light: 130 uE m-2 s-1 (Control)	Light: 65 uE m-2 s-1	Photoperiod: L24	Photoperiod: L18D6	Photoperiod: L13D11 (Control)	Photoperiod: L8D16	RBW: 4:1:1 (Control)	RBW: 4:1:0	RBW: 3:1:1	RBW: 3:1:0	Nitrogen: 0%	Nitrogen: 25%	Nitrogen: 50%	Nitrogen: 100% (Control)	Nitrogen: 150%	Phosphorous: 0%	Phosphorous: 25%	Phosphorous: 50%	Phosphorous: 100% (Control)	Phosphorous: 150%	Potassium: 0%	Potassium: 25%	Potassium: 50%	Potassium: 100% (Control)	Potassium: 150%	Temperature: 20°C (Control)	Temperature: 25°C	Temperature: 30°C
Spov3_C0004.00024	-0.07	-0.04	0.44	0.23	0.03	-0.07	-0.07	0.26	0.35	-0.45	-0.33	0.4	0.21	0.58	-0.22	0.36	0.06	-0.18	-0.48	-0.78	-0.83	-0.4	-0.01	-0.51	-0.06	-0.17	-0.68	0.13	0.38	0.49
Spov3_C0015.00034	1.29	1.15	-	-	-	0.88	0.81	-	-	-	2.75	-	1.08	-	-	-	-	-	-	-	-	0.75	-	-	-	-	3.2	-	1.0	-
Spov3_C0016.00023 (GTE8)	-	-	-	-	-	-	-	2.18	-	-	-	-	-	-	-	2.26	2.19	-	-	-	-	-	-	-	-	-	2.91	-	3.1	-
Spov3_C0034.00015	-	-	0.43	1.82	-0.04	-	0.91	-	-	-	-	-	2.48	-	-1.59	-	-	-	1.03	-	1.16	1.61	-	-	-	-	2.72	-	-	1.31
Spov3_C0038.00005 (PAP25)	-	-	-	-	-	-	-	2.66	-	-	-	-	-	-	-	-	-	-	3.26	-	-	-	-	-	-	-	3.81	-	-	-
Spov3_C0040.00021 (MTK)	-0.43	-1.84	-	1.73	-1.74	1.12	0.34	0.79	-0.66	-	-1.59	-0.67	-	-	1.81	-0.71	-	-23.78	-	-0.16	-	0.65	0.87	-	0.23	-17.88	2.1	0.59	1.67	-
Spov3_C0041.00007 (NRX2)	1.25	0.8	-1.75	-2.81	-0.13	-1.58	-0.9	0.12	-1.4	0.43	-	-0.2	0.68	-0.21	0.12	-2.84	-24.83	-3.14	0.65	0.06	-0.39	-0.41	0.33	0.69	-1.73	0.15	1.27	1.51	1.17	-2.08
Spov3_C0042.00015 (ZRF1a)	-1.63	0.1	0.76	0.86	-1.83	0.33	-1.28	-0.23	0.93	1.06	0.21	0.3	-0.18	-0.8	-2.64	0.5	0.23	0.53	0.19	-1.22	0.06	-0.86	-0.65	0.03	-1.13	-0.29	-2.96	0.49	-0.2	0.83
Spov3_C0045.00014 (STT3A)	-	2.71	-	2.56	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.91	2.17	-	-	-	-	2.55	-	-	1.78
Spov3_C0058.00024	-	-	-	2.83	-	2.85	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.04	-	-	-	-	-	2.9	-	-	-
Spov3_C0062.00002	1.61	-	-	1.11	-	-	-	-	2.48	-	-	-	-	-	-	-	-	2.23	-	-	-	-	1.31	2.33	-	-	2.81	-	-	-
Spov3_C0424.00002 (RUG3)	-	-	-	-	-	-	-	-	-	-	-	-	-	3.35	-	-	-	-	-	-	-	-	-	-	-	-	3.23	-	3.39	-
Spov3_C1309.00002	0.28	-	1.8	-	-	0.08	-	-	1.56	0.51	-	1.28	1.39	1.41	-	-	-	0.1	-	-0.0	-	-	-	0.4	0.19	0.29	2.4	-	0.2	-
Spov3_chr1.00677 (FHY3)	0.97	1.81	0.66	-	-	-0.64	0.59	0.08	-	-	2.2	-	-	0.62	-0.56	0.12	-	1.28	-	1.64	-	-	-	0.67	-	-	-	0.6	1.69	-
Spov3_chr1.00710 (PyrD)	-	-	0.24	-0.08	0.63	-	-	-	0.02	2.3	-	-	2.16	-	-	-0.68	-	2.74	-	-	0.69	-	-	-	0.67	-	1.29	0.99	-	0.01
Spov3_chr1.00949 (TOR)	-0.72	0.49	0.31	0.04	-1.38	-0.13	-0.21	0.85	0.46	-0.02	-0.32	-0.22	0.46	-0.3	-1.67	-0.1	0.56	0.42	-0.76	-0.54	-0.38	-1.02	0.63	-0.02	0.36	-0.5	-0.23	-0.3	-0.05	0.85
Spov3_chr1.02032	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.91	-	-	-
Spov3_chr1.02063 (LRX9)	-	-	-	-	1.18	-	-	-	-	2.96	1.58	-	-	1.29	-	1.47	-	1.2	-	2.34	-	-	-	-	1.25	-	-	-	-	1.02
Spov3_chr1.02303	1.0	0.81	0.01	0.32	0.53	-0.89	-0.69	0.41	0.89	-0.54	1.1	0.17	-	-1.78	-1.64	-1.27	1.4	-2.72	-	0.88	-	-	0.43	0.32	-0.83	0.14	1.34	-1.62	-	0.57
Spov3_chr1.02396	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.91	-	-	-
Spov3_chr1.02505 (CRK8)	0.56	0.55	-0.22	-0.21	0.49	0.16	0.02	0.0	0.35	-0.09	-0.17	-0.19	-0.45	0.15	-0.4	-0.05	0.14	0.36	-0.44	-0.24	-0.97	-0.37	-1.98	-0.22	0.44	-0.62	0.29	0.35	0.15	0.34
Spov3_chr1.02649	0.44	-0.6	-	-	1.6	-	-	-0.61	0.88	-	-	-	-	-	1.3	-	-	1.97	-	-0.34	-	-	-0.57	-	-	0.9	2.03	1.89	2.31	-
Spov3_chr1.02918	-0.13	0.21	0.51	-0.64	0.68	-0.98	0.15	-2.25	0.62	-0.37	-0.42	0.54	0.03	0.13	-0.76	0.43	-0.15	-0.72	-1.89	-0.32	0.46	-0.13	-0.2	-0.8	-0.07	0.66	0.35	0.89	-0.34	0.16
Spov3_chr1.03023 (SAUR20)	0.69	0.99	0.25	0.61	0.95	-1.61	0.34	-1.29	0.62	-1.97	-0.63	0.32	-0.7	-4.18	-1.48	0.9	0.5	-0.66	-0.92	-0.5	0.23	-0.77	-2.6	0.17	-0.7	0.21	-0.17	0.53	0.69	0.17
Spov3_chr1.03593 (SPT1)	-	1.26	-	1.24	-	-	-	-	-	-	-	3.29	1.52	-	-	-	-	-	-	-	-	-	-	-	-	-	3.65	-	-	-
Spov3_chr1.04044 (Fh5)	0.72	-	-	-	-	-0.27	-	-0.06	0.6	-	-	-0.2	1.5	-	-0.32	-	-	-	-	-	-	-	-	1.32	-0.22	-	2.74	2.59	1.88	-0.27
Spov3_chr1.04342	-	-	-	2.08	-	-	-	-	-	-	-	1.39	-	2.45	-	-	-	-	-	-	-	1.58	1.97	-	-	-	3.43	-	-	-
Spov3_chr2.00898 (PGP21)	-	-	-	3.13	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.8	-	2.88	-
Spov3_chr2.01414	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2.6	-	-	-	-	-	-	-	2.73	3.51	-	2.56	-
Spov3_chr2.01880 (SDG40)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.91	-	-	-
Spov3_chr2.02070	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2.95	-	-	-	-	-	-	4.48	-	-	-
Spov3_chr2.02668	-	-0.17	-	-	-	-	1.82	-	-0.29	0.32	-	1.3	-	2.17	-0.53	-	0.96	0.88	-	-1.34	-1.81	-0.3	-	-1.94	-	-0.01	-	-	2.87	1.02
Spov3_chr2.03094	1.64	2.71	-	-	-	-	-	-	-	-	-	-	1.31	0.59	-1.4	-	-	-	1.44	-	1.14	-	-	-	-	-	3.47	-	-	-
Spov3_chr2.03098 (IRE1C)	-	-	-	-	0.76	-0.24	-	0.3	-	-	2.33	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.41	-	-	-
Spov3_chr2.03315 (RH27)	-	-	-	1.83	-	2.91	-	-	-	-	-	-	-	-	-	-	-	-	-	1.75	-	-	-	-	-	-	3.46	-	2.18	-
Spov3_chr2.03856	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.91	-	-	-
Spov3_chr2.04271 (ITPK4)	2.21	-	-	-	-	-	2.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.35	-	1.91	1.88
Spov3_chr2.04643 (PBL34)	2.53	-	-	1.5	-	2.3	1.83	-	1.4	-	-	-	-	-	1.33	1.59	-	-	-	-	-	-	-	-	-	-	2.25	-	-	-
Spov3_chr2.04796	0.64	1.04	0.58	-0.31	0.41	-0.23	0.58	0.42	0.33	0.57	-0.97	-0.63	0.34	0.43	-1.93	-0.58	0.54	0.06	-0.07	-0.78	-0.34	-2.66	-0.7	-0.18	0.38	-1.97	0.43	-2.44	-0.92	0.62
Spov3_chr2.05038 (RPB5D)	-	-	-	-	-	-	3.01	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.07	-	-	3.76
Spov3_chr2.05085	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.03	-	-	-	-	-	-	-	-	-	-	4.45	-	-	-
Spov3_chr2.05509	-	-	-	-	-	-	-	-	3.22	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.37	-	-	-
Spov3_chr3.00385	-0.4	0.55	1.07	0.74	-0.1	-0.84	0.14	-0.9	0.64	0.49	-0.55	0.47	0.92	-0.37	-1.2	0.68	0.45	-0.49	-0.23	-2.78	0.54	-	0.44	0.5	-1.79	-1.19	-0.47	-2.28	-0.52	0.59
Spov3_chr3.01114 (PAP25)	-	-	-	-	-	-	-	-	-	-	-	1.98	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.45	2.1	-	-
Spov3_chr3.01156	-	0.08	-	-	-	-	2.06	-	-0.05	0.57	-	1.54	-	2.42	-0.28	-	1.21	1.13	-	-1.09	-1.56	-0.05	-	-1.69	-	0.24	-	-	1.6	1.27
Spov3_chr3.01579	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.91	-	-	-
Spov3_chr3.01691	-	-	-	-	-	-	-	-	-	3.22	-	-	-	-	-	1.65	-	-	-	3.26	-	-	-	-	-	-	3.0	-	-	-
Spov3_chr3.01764	-	-	-	2.36	1.21	-	-	-	-	-	-	-	-	-	2.78	-	-	-	-	-	-	-	2.11	-	-	1.17	1.93	-	1.63	1.16
Spov3_chr3.03223 (PRORP3)	-	-	-	-	-	-	-	-	-	2.42	-	-	-	-	-	-	-	3.26	-	-	-	-	-	-	-	-	3.31	-	-	2.37
Spov3_chr3.03239 (FRS11)	-	1.26	-	2.15	-	1.21	-	-	-	-	1.22	0.93	-	1.16	-	-	-	-	-	0.9	-	1.19	-	0.88	-0.59	-	2.95	-	-	-
Spov3_chr4.00165 (BAM1)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.35	-	-	-	-	-	-	-	2.55	-	-	-	3.8	-	-	-
Spov3_chr4.00514 (CIP8)	-0.43	-0.35	-	0.42	1.36	-0.43	-0.78	1.4	-	-	-	0.74	1.73	-0.32	-	-0.4	-1.65	-	0.44	-0.38	-0.65	0.54	0.7	1.5	-	-0.18	0.71	0.9	-0.61	-
Spov3_chr4.01156	-	2.77	-	2.74	2.21	-	2.65	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2.49	-	-	-
Spov3_chr4.01401 (AHL13)	-	2.06	1.09	-	-	-	-	-	-	-	1.57	-	-	-	-	-	-	-	-	-	-	2.84	2.53	-	-	-	2.96	-	-	-
Spov3_chr4.01526	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.84	-	-	-	-	3.97	-	-	-
Spov3_chr4.02105 (BPH1)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.91	-	-	-
Spov3_chr4.02295	-	-	-	2.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2.97	-	-	3.85	-	-	-
Spov3_chr4.03240 (GSL6)	-	-	-	3.21	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.25	-	-	3.49
Spov3_chr4.03629 (GGL7)	-	0.69	-	0.67	0.59	-	-	-	-	0.62	2.3	0.47	-	2.18	0.47	0.67	-	-	-	-	0.57	-	-	0.42	-	0.48	1.42	-	1.61	-
Spov3_chr4.03905 (NPF1.2)	-0.21	1.79	-	0.7	-	-	-	1.76	-	-0.07	-	-	1.54	-	-	-	0.77	-	-	-	-	0.64	0.97	-	-	-	2.58	1.38	1.59	-
Spov3_chr4.03947 (ROG2)	0.4	0.63	0.8	-0.24	-0.2	-0.43	0.21	-0.65	0.16	0.63	-0.52	-1.58	0.64	0.45	-1.67	0.38	0.99	0.57	-2.61	-2.7	-0.26	-1.79	0.75	-2.71	-0.37	-0.1	0.74	-0.29	-0.42	0.25
Spov3_chr4.04287 (NPF5.14)	-	2.66	-	1.31	-	-	-	-	-	-	-	-	-	1.41	-	-	-	1.34	-	-	-	-	-	-	-	-	2.94	-	-	3.06
Spov3_chr4.04608 (GASA8)	-0.3	1.37	-0.8	-0.84	0.87	0.01	0.46	-1.15	1.01	0.19	0.73	-0.18	0.0	-1.33	-0.95	0.22	0.07	-0.07	0.0	-1.59	-0.87	-0.02	-1.44	-	-0.88	0.2	0.97	-0.4	-0.3	0.64
Spov3_chr5.00159 (BGLC1)	0.15	0.47	-0.39	0.33	0.92	0.64	0.18	-0.32	0.0	0.17	0.15	-1.05	-0.19	0.89	0.4	-1.1	-1.45	-1.35	-1.26	-1.69	-0.73	-1.33	-0.3	0.84	-0.7	0.46	0.86	-2.01	0.31	0.59
Spov3_chr5.00818	-0.31	0.03	0.5	0.54	0.05	-0.72	-1.27	-0.11	0.02	0.3	-0.39	0.95	0.58	-0.18	-1.41	-0.45	-0.09	-0.03	-0.37	-1.0	0.4	-0.46	-0.29	0.29	-0.71	-1.26	0.35	0.51	0.47	0.6
Spov3_chr5.01807 (RECA2)	-3.23	-	-	2.03	0.74	-	1.07	-	-	-	-	1.98	-	1.17	-	-	-	-	-	-	-	-2.2	1.03	-	-	0.73	2.36	2.37	0.71	-
Spov3_chr5.03751	-0.25	0.42	0.75	-0.14	-0.64	-0.32	-0.3	0.15	0.52	-0.93	-0.56	0.48	0.16	0.35	-0.92	0.01	0.69	-0.71	-0.39	-1.27	0.45	-1.4	-0.28	0.13	-0.57	-0.37	0.31	-0.2	0.63	0.79
Spov3_chr5.03869 (NAC057)	-	-0.82	-	-	1.27	-1.14	0.07	-0.86	1.76	-	-	0.51	1.63	0.98	-0.1	-	-1.12	-	-0.88	-1.31	-	-	1.36	0.47	-	0.94	2.42	-	0.11	-1.15
Spov3_chr5.04191	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.91	-	-	-
Spov3_chr5.04310	2.16	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.84	-	-	-	-	1.9	-	-	-	4.19	-	-	-
Spov3_chr5.04482 (NEDD1)	-	-	-	-	-	-	-	-	-	2.3	-	-	-	2.14	-	-	3.18	-	-	3.03	1.79	-	-	-	-	-	-	-	-	-
Spov3_chr6.00817 (NERD)	-1.42	0.22	-0.17	0.59	-1.53	-0.35	0.8	-0.58	1.18	-0.8	-0.81	-1.02	-0.19	-	1.19	-1.46	-1.03	0.59	-2.41	1.45	0.21	-0.77	-0.99	0.87	-0.97	-1.8	0.65	0.17	0.75	-0.09
Spov3_chr6.01137	2.55	-	0.79	1.55	-	-	-	-	-	-	-	-	-	0.3	-	-	-	-	-	1.63	0.1	-0.44	-1.63	0.3	-	-	2.56	0.28	1.63	0.67
Spov3_chr6.01272 (TLP-3)	-	-	1.26	-	-	-	-	-	-	1.79	1.3	0.05	-	-	0.05	-	0.25	-0.05	1.87	-	0.15	-0.06	0.01	-	-	-	2.51	2.32	-	-
Spov3_chr6.02050 (PGP10)	-0.88	-0.03	0.04	0.21	-	-1.19	0.09	-2.3	1.59	0.57	-0.85	0.49	1.35	1.86	-0.16	-0.2	-0.68	-1.61	-	-	-	0.84	1.12	0.17	-	-0.95	1.11	-1.58	-0.69	-1.01
Spov3_chr6.02127 (OTP72)	0.92	0.04	0.69	-0.64	-0.88	-1.19	-0.91	0.27	-0.03	-0.24	-0.65	-0.01	0.55	0.46	-0.08	-0.71	0.2	0.02	-1.1	0.33	-0.5	-0.11	-1.5	0.29	0.18	-0.14	-0.89	0.26	0.82	0.68
Spov3_chr6.02236	0.07	-0.09	-0.46	-0.33	0.44	0.31	0.08	0.36	-0.04	-0.03	-0.64	0.13	0.47	0.73	0.01	0.18	-0.37	0.17	-0.59	-1.07	-0.56	-0.13	-0.13	-0.07	-0.44	-0.08	0.18	-0.13	0.31	0.26
Spov3_chr6.02278	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.91	-	-	-
Spov3_chr6.02569 (BTI2)	-0.64	-0.72	-2.04	0.69	0.49	-0.78	-1.09	-0.8	0.86	-0.32	0.24	0.07	0.8	1.48	0.4	-1.1	0.51	-0.06	-0.12	-1.0	-0.3	0.74	0.17	0.24	-0.49	-0.57	-0.48	-0.23	-0.5	-1.21
Spov3_S01.00085 (PDR5)	-	4.04	-	-	-	-	-	-	-	2.81	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2.7	-	-	-

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.