Heatmap: Cluster_110 (Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or zlog-transformed)

View using InCHLib : here ( Experimental feature, still under development)

(Values are normalized against highest expression of the row)

Gene	Light: 260 uE m-2 s-1	Light: 195 uE m-2 s-1	Light: 130 uE m-2 s-1 (Control)	Light: 65 uE m-2 s-1	Photoperiod: L24	Photoperiod: L18D6	Photoperiod: L13D11 (Control)	Photoperiod: L8D16	RBW: 4:1:1 (Control)	RBW: 4:1:0	RBW: 3:1:1	RBW: 3:1:0	Nitrogen: 0%	Nitrogen: 25%	Nitrogen: 50%	Nitrogen: 100% (Control)	Nitrogen: 150%	Phosphorous: 0%	Phosphorous: 25%	Phosphorous: 50%	Phosphorous: 100% (Control)	Phosphorous: 150%	Potassium: 0%	Potassium: 25%	Potassium: 50%	Potassium: 100% (Control)	Potassium: 150%	Temperature: 20°C (Control)	Temperature: 25°C	Temperature: 30°C
Spov3_C0011.00050 (IQD32)	0.99	1.0	0.88	0.88	0.97	0.66	0.66	0.66	0.73	0.87	0.73	0.68	0.74	0.98	0.76	0.73	0.74	0.83	0.65	0.61	0.78	0.76	0.87	0.78	0.74	0.8	0.85	0.98	0.88	0.73
Spov3_C0017.00023 (AGO4)	0.82	0.9	0.71	0.78	0.76	0.62	0.56	0.65	0.63	0.76	0.63	0.64	0.65	1.0	0.69	0.7	0.69	0.61	0.57	0.53	0.66	0.64	0.7	0.72	0.65	0.7	0.73	0.9	0.84	0.66
Spov3_chr1.00031 (CALS3)	0.93	1.0	0.82	0.86	1.0	0.66	0.59	0.56	0.68	0.74	0.67	0.67	0.78	0.87	0.81	0.73	0.72	0.67	0.58	0.55	0.66	0.7	0.81	0.71	0.68	0.73	0.79	0.89	0.83	0.74
Spov3_chr1.00785 (PUM4)	0.96	1.0	0.74	0.8	0.81	0.48	0.46	0.55	0.62	0.66	0.57	0.58	0.52	0.6	0.48	0.59	0.61	0.44	0.47	0.42	0.54	0.57	0.59	0.6	0.53	0.6	0.6	0.82	0.97	0.75
Spov3_chr1.01537	0.96	1.0	0.9	0.97	0.92	0.72	0.78	0.85	0.84	0.85	0.84	0.8	0.76	0.92	0.82	0.77	0.77	0.73	0.71	0.7	0.83	0.78	0.83	0.73	0.82	0.85	0.93	0.97	0.88	0.79
Spov3_chr1.03667 (TRA1a)	0.97	1.0	0.77	0.77	0.79	0.5	0.48	0.46	0.65	0.8	0.56	0.62	0.5	0.79	0.53	0.54	0.49	0.55	0.43	0.41	0.57	0.59	0.53	0.56	0.55	0.61	0.69	0.91	0.95	0.71
Spov3_chr1.03844	0.86	1.0	0.82	0.81	0.72	0.52	0.55	0.67	0.6	0.65	0.56	0.57	0.6	0.73	0.61	0.55	0.52	0.51	0.41	0.4	0.53	0.59	0.66	0.54	0.5	0.65	0.71	0.82	0.89	0.89
Spov3_chr1.05202 (UPL1)	0.93	0.96	0.8	0.75	0.77	0.63	0.6	0.61	0.8	0.74	0.64	0.66	0.6	1.0	0.65	0.65	0.6	0.58	0.5	0.49	0.62	0.66	0.71	0.64	0.61	0.67	0.7	0.91	0.87	0.76
Spov3_chr2.00964 (UGT79B6)	0.9	0.97	0.72	0.52	1.0	0.44	0.4	0.44	0.49	0.56	0.45	0.37	0.63	0.74	0.39	0.5	0.59	0.98	0.55	0.46	0.63	0.72	0.37	0.53	0.43	0.48	0.54	0.81	0.78	0.68
Spov3_chr2.00975 (ESP4)	0.96	0.92	0.88	0.95	0.84	0.65	0.63	0.63	0.8	0.87	0.78	0.76	0.82	1.0	0.78	0.74	0.72	0.76	0.64	0.66	0.74	0.68	0.74	0.68	0.71	0.8	0.84	0.89	0.87	0.89
Spov3_chr2.02102	0.98	0.98	0.8	0.62	1.0	0.57	0.58	0.49	0.75	0.84	0.71	0.69	0.74	0.76	0.64	0.75	0.78	0.88	0.7	0.58	0.8	0.78	0.55	0.58	0.74	0.85	0.89	0.81	0.85	0.86
Spov3_chr2.02127	0.98	0.98	0.8	0.62	1.0	0.57	0.58	0.49	0.75	0.84	0.71	0.69	0.74	0.76	0.64	0.75	0.78	0.88	0.7	0.58	0.8	0.78	0.55	0.58	0.74	0.85	0.89	0.81	0.85	0.86
Spov3_chr2.03904 (TRS85)	0.97	0.99	0.91	0.87	1.0	0.76	0.77	0.87	0.87	0.9	0.85	0.83	0.75	0.97	0.79	0.82	0.88	0.81	0.73	0.72	0.8	0.82	0.81	0.75	0.85	0.88	0.97	0.93	0.92	0.82
Spov3_chr2.03945 (UBP12)	1.0	0.99	0.91	0.91	1.0	0.82	0.73	0.78	0.84	0.85	0.78	0.8	0.78	0.89	0.8	0.77	0.77	0.76	0.7	0.68	0.79	0.79	0.98	0.75	0.78	0.82	0.85	0.94	0.95	0.9
Spov3_chr3.00056 (MED23)	0.92	0.9	0.85	0.83	0.8	0.72	0.72	0.78	0.78	0.88	0.8	0.89	0.74	1.0	0.79	0.75	0.79	0.64	0.63	0.66	0.78	0.75	0.74	0.71	0.76	0.82	0.87	0.96	0.85	0.81
Spov3_chr3.02264	0.96	0.93	0.79	0.77	1.0	0.7	0.68	0.74	0.72	0.74	0.75	0.71	0.83	0.87	0.81	0.78	0.84	0.79	0.65	0.6	0.76	0.74	0.84	0.71	0.72	0.78	0.86	0.79	0.89	0.93
Spov3_chr3.02335 (TRA1b)	0.93	1.0	0.78	0.81	0.78	0.5	0.38	0.39	0.63	0.71	0.52	0.56	0.44	0.95	0.5	0.49	0.44	0.58	0.41	0.38	0.53	0.52	0.51	0.53	0.52	0.58	0.63	0.81	0.88	0.75
Spov3_chr3.02812 (RVN)	0.95	1.0	0.7	0.69	0.83	0.45	0.43	0.55	0.63	0.72	0.6	0.63	0.67	0.94	0.58	0.61	0.58	0.55	0.55	0.44	0.66	0.62	0.8	0.78	0.62	0.65	0.77	0.86	0.88	0.61
Spov3_chr3.03858 (gfs12)	0.9	0.92	0.78	0.8	0.81	0.67	0.66	0.73	0.76	0.83	0.77	0.74	0.67	1.0	0.78	0.77	0.78	0.72	0.62	0.58	0.72	0.61	0.76	0.6	0.67	0.77	0.78	0.83	0.87	0.76
Spov3_chr3.04036 (RTN20)	0.9	0.83	0.72	0.67	1.0	0.68	0.65	0.65	0.7	0.88	0.67	0.7	0.67	0.88	0.71	0.67	0.73	0.65	0.58	0.63	0.68	0.66	0.61	0.62	0.73	0.72	0.88	0.82	0.83	0.82
Spov3_chr4.00348 (SEC)	0.91	0.96	0.88	0.9	1.0	0.74	0.67	0.68	0.82	0.89	0.79	0.78	0.8	0.98	0.82	0.79	0.79	0.85	0.72	0.66	0.75	0.74	0.93	0.79	0.79	0.78	0.87	0.95	0.85	0.82
Spov3_chr4.00631 (CLUB)	0.98	1.0	0.94	0.94	0.88	0.75	0.71	0.76	0.85	0.85	0.8	0.84	0.76	0.91	0.82	0.76	0.82	0.78	0.74	0.72	0.8	0.82	0.77	0.75	0.76	0.83	0.87	0.87	0.93	0.97
Spov3_chr4.00811 (ITB1)	1.0	0.94	0.85	0.85	0.9	0.69	0.64	0.68	0.72	0.79	0.68	0.73	0.68	0.97	0.73	0.7	0.72	0.66	0.58	0.57	0.68	0.67	0.82	0.75	0.69	0.72	0.75	0.95	0.96	0.76
Spov3_chr4.01529 (SCC2)	0.87	0.93	0.72	0.78	0.78	0.68	0.62	0.67	0.66	0.72	0.61	0.67	0.59	1.0	0.66	0.72	0.65	0.62	0.53	0.49	0.55	0.64	0.7	0.65	0.58	0.68	0.69	0.8	0.76	0.7
Spov3_chr4.01763 (DMS5)	1.0	0.95	0.83	0.89	0.77	0.62	0.58	0.58	0.69	0.78	0.65	0.66	0.64	0.73	0.61	0.61	0.61	0.58	0.56	0.49	0.61	0.64	0.6	0.63	0.67	0.69	0.75	0.92	0.92	0.77
Spov3_chr4.02307 (GN)	1.0	0.99	0.85	0.79	0.79	0.73	0.74	0.65	0.73	0.85	0.73	0.68	0.72	0.97	0.77	0.79	0.75	0.71	0.66	0.57	0.77	0.7	0.9	0.69	0.65	0.7	0.77	0.86	0.86	0.84
Spov3_chr4.02674 (MKP1)	0.81	0.83	0.66	0.69	0.8	0.62	0.62	0.54	0.66	0.76	0.65	0.64	0.65	1.0	0.63	0.69	0.7	0.62	0.56	0.53	0.59	0.62	0.75	0.67	0.66	0.64	0.7	0.89	0.86	0.64
Spov3_chr4.03054 (DMS2)	0.99	1.0	0.82	0.88	0.88	0.58	0.5	0.55	0.66	0.8	0.62	0.6	0.67	0.62	0.53	0.6	0.6	0.66	0.48	0.44	0.65	0.58	0.84	0.66	0.64	0.66	0.74	0.93	0.9	0.77
Spov3_chr4.03090 (GYM)	0.93	0.98	0.88	0.89	0.98	0.72	0.7	0.81	0.73	0.79	0.68	0.7	0.7	0.93	0.74	0.7	0.72	0.74	0.67	0.61	0.67	0.74	0.87	0.75	0.72	0.77	0.8	0.98	1.0	0.89
Spov3_chr4.03581 (SUP32)	1.0	0.99	0.92	0.94	0.9	0.71	0.74	0.85	0.83	0.88	0.76	0.73	0.73	0.86	0.76	0.77	0.78	0.79	0.67	0.64	0.75	0.73	0.9	0.73	0.79	0.8	0.82	0.96	0.96	0.87
Spov3_chr4.03827 (CABIN1)	0.87	1.0	0.74	0.83	0.77	0.65	0.58	0.67	0.58	0.62	0.57	0.6	0.63	0.97	0.67	0.66	0.7	0.68	0.48	0.47	0.57	0.58	0.6	0.64	0.61	0.66	0.69	0.83	0.75	0.69
Spov3_chr4.04151 (AXY4)	0.9	0.82	0.78	0.75	1.0	0.62	0.57	0.79	0.65	0.89	0.71	0.7	0.7	0.71	0.7	0.73	0.67	0.7	0.66	0.66	0.75	0.65	0.68	0.69	0.71	0.74	0.8	0.89	0.87	0.75
Spov3_chr5.00582 (FRG2)	1.0	0.97	0.87	0.88	0.82	0.67	0.63	0.72	0.76	0.78	0.66	0.73	0.71	0.92	0.72	0.68	0.77	0.75	0.56	0.6	0.67	0.7	0.83	0.68	0.73	0.69	0.75	0.92	0.88	0.8
Spov3_chr5.00752	0.89	1.0	0.81	0.79	0.73	0.54	0.55	0.59	0.73	0.76	0.65	0.67	0.59	0.83	0.62	0.6	0.55	0.54	0.5	0.5	0.66	0.64	0.84	0.6	0.59	0.66	0.74	0.78	0.83	0.79
Spov3_chr5.00981 (BRM)	1.0	0.98	0.85	0.87	0.74	0.64	0.61	0.6	0.68	0.71	0.63	0.66	0.6	1.0	0.72	0.7	0.66	0.65	0.56	0.54	0.65	0.68	0.83	0.66	0.63	0.63	0.7	0.88	0.85	0.81
Spov3_chr5.01100 (BCHC2)	0.97	1.0	0.93	0.94	0.83	0.57	0.54	0.58	0.72	0.76	0.65	0.68	0.65	0.73	0.63	0.58	0.58	0.66	0.54	0.52	0.61	0.66	0.79	0.57	0.61	0.69	0.79	0.83	0.93	0.87
Spov3_chr5.01289 (SYD)	1.0	0.99	0.89	0.9	0.73	0.63	0.63	0.74	0.76	0.78	0.67	0.7	0.63	0.84	0.63	0.63	0.67	0.53	0.57	0.54	0.65	0.7	0.78	0.69	0.68	0.68	0.74	0.92	0.87	0.79
Spov3_chr5.01601 (AIR9)	0.89	1.0	0.89	0.88	1.0	0.63	0.57	0.69	0.67	0.8	0.66	0.67	0.68	0.98	0.66	0.68	0.65	0.78	0.59	0.56	0.73	0.68	0.68	0.73	0.69	0.72	0.76	0.9	0.92	0.7
Spov3_chr5.01950 (RIC7)	0.92	1.0	0.81	0.85	0.84	0.68	0.64	0.67	0.71	0.76	0.7	0.72	0.69	0.86	0.7	0.69	0.7	0.61	0.58	0.56	0.66	0.69	0.71	0.71	0.67	0.73	0.74	0.86	0.85	0.8
Spov3_chr5.02117 (KAM2)	0.92	1.0	0.82	0.8	0.83	0.72	0.67	0.66	0.77	0.8	0.7	0.75	0.7	0.96	0.79	0.69	0.7	0.61	0.56	0.55	0.63	0.68	0.74	0.67	0.64	0.68	0.73	0.84	0.9	0.8
Spov3_chr5.02535	0.91	0.93	0.75	0.81	0.71	0.64	0.54	0.64	0.71	0.83	0.66	0.76	0.67	0.91	0.66	0.68	0.67	0.62	0.61	0.54	0.66	0.65	0.7	0.73	0.66	0.72	0.78	1.0	0.78	0.68
Spov3_chr5.02583	1.0	0.99	0.9	0.82	0.98	0.69	0.74	0.77	0.92	0.92	0.86	0.87	0.83	0.86	0.9	0.81	0.82	0.74	0.75	0.73	0.84	0.88	0.9	0.77	0.81	0.88	0.92	0.92	0.98	0.85
Spov3_chr5.02637 (ELF8)	0.88	0.92	0.78	0.9	0.74	0.71	0.66	0.75	0.67	0.69	0.69	0.7	0.67	1.0	0.75	0.74	0.76	0.63	0.58	0.58	0.65	0.71	0.73	0.71	0.69	0.7	0.72	0.93	0.83	0.74
Spov3_chr6.00180 (SMC1)	0.87	0.9	0.8	0.84	0.77	0.66	0.62	0.63	0.65	0.7	0.64	0.67	0.63	1.0	0.67	0.66	0.65	0.7	0.56	0.53	0.69	0.68	0.65	0.68	0.65	0.68	0.7	0.91	0.78	0.6
Spov3_chr6.00380	1.0	0.96	0.9	0.92	0.84	0.59	0.62	0.75	0.67	0.73	0.61	0.64	0.6	0.79	0.69	0.64	0.67	0.59	0.51	0.5	0.63	0.64	0.84	0.68	0.64	0.63	0.73	0.92	0.95	0.79
Spov3_chr6.00810	1.0	0.92	0.84	0.74	0.94	0.54	0.53	0.59	0.74	0.94	0.74	0.67	0.74	0.8	0.71	0.65	0.69	0.73	0.66	0.59	0.71	0.74	0.62	0.71	0.73	0.77	0.79	0.85	0.85	0.79
Spov3_chr6.01018	1.0	0.99	0.77	0.68	0.82	0.49	0.45	0.68	0.56	0.74	0.57	0.65	0.57	0.8	0.52	0.6	0.62	0.64	0.62	0.5	0.58	0.57	0.82	0.69	0.65	0.66	0.75	0.94	0.72	0.76
Spov3_chr6.01066 (BRR2c)	0.85	0.9	0.78	0.73	0.73	0.61	0.53	0.53	0.61	0.68	0.59	0.62	0.54	1.0	0.62	0.57	0.59	0.58	0.45	0.45	0.59	0.61	0.66	0.5	0.51	0.58	0.67	0.8	0.8	0.74
Spov3_chr6.01419 (SCD1)	1.0	0.95	0.84	0.86	0.94	0.6	0.59	0.66	0.72	0.83	0.66	0.74	0.6	0.81	0.67	0.65	0.64	0.69	0.63	0.55	0.64	0.68	0.92	0.72	0.7	0.76	0.82	0.95	0.94	0.78
Spov3_chr6.02221 (GN)	0.91	0.92	0.79	0.73	1.0	0.65	0.67	0.86	0.67	0.85	0.73	0.73	0.81	0.86	0.83	0.83	0.79	0.68	0.61	0.6	0.71	0.76	0.72	0.84	0.77	0.77	0.85	0.8	0.9	0.78
Spov3_chr6.02516 (PDS5)	0.95	1.0	0.83	0.89	0.9	0.69	0.65	0.72	0.65	0.71	0.62	0.66	0.69	1.0	0.7	0.67	0.69	0.72	0.54	0.52	0.66	0.64	0.79	0.7	0.66	0.7	0.72	0.93	0.9	0.78
Spov3_S03.00008 (VIR)	0.94	1.0	0.87	0.87	0.7	0.67	0.66	0.74	0.8	0.85	0.79	0.8	0.71	0.97	0.79	0.68	0.71	0.58	0.58	0.61	0.7	0.75	0.79	0.74	0.74	0.74	0.76	0.91	0.93	0.86
Spov3_S18.00001 (KLK)	0.99	0.95	0.79	0.79	1.0	0.77	0.7	0.71	0.78	0.87	0.79	0.81	0.78	0.99	0.73	0.7	0.71	0.75	0.68	0.68	0.74	0.75	0.76	0.79	0.78	0.8	0.82	0.94	0.91	0.78

Details

Expression values normalized per gene (using the maximum value, Green cells indicate low expression and red high. (Dark gray cells indicate missing values)