1. Home
  2. Tools
  3. Expression Heatmap
  4. Results

Heatmap: Cluster_204 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

 Transpose table  Download table
Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000439 (PMEIL)
 - - 2.93 - 0.26 - 0.03 - - - - - - 0.52 2.49 0.43 - - - - 1.23 2.47 - - - 1.2 - 1.38 - - -
3.74 - - - - - - - - 2.33 - - - 2.73 - - - - - - - - - - - - - - - 2.58 -
Bra001138 (RBK2)
 3.57 - - - 3.2 - - - - - - - - - - - - - - - - - - - - - - - - 3.31 -
2.26 1.42 1.34 0.33 -1.08 -1.95 -0.32 -1.23 -0.63 -1.36 0.13 0.35 -0.3 -1.11 -0.5 -1.36 -0.49 0.16 -4.14 -1.26 -1.17 -3.06 1.09 -0.97 0.44 -1.62 - -1.6 -0.73 0.7 1.18
Bra001308 (PLL3)
 3.5 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 4.3
Bra001311 (MYB3R-3)
 2.78 - - - - - -0.22 - - - - - 3.37 - 0.04 - - 1.36 2.5 - 1.89 - - - - - - - - - -
Bra001795 (COBL10)
 2.01 - -0.63 - 0.21 -0.41 1.15 0.57 1.64 - -1.14 0.02 0.18 -1.64 0.33 - 0.09 0.91 -0.61 -0.31 -2.07 1.11 - -0.08 0.51 0.01 - -0.71 -1.74 0.77 -0.67
4.09 - - - - 2.19 - - 2.07 - - - - - - - - - - - - - - - - - - - - - 2.37
2.97 - - - - - -0.11 - - - 0.11 - - - 1.82 1.22 - 2.77 - - - 1.62 0.03 - 0.02 - 0.02 - 1.21 - -
Bra002750 (PICALM2a)
 4.05 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 3.85
Bra002901 (XYLT)
 2.52 - 3.0 2.31 1.77 - 0.02 - -1.36 -2.43 - - 1.59 -0.07 -0.73 - -0.96 - -2.2 - -0.11 -0.9 - -0.76 - - - - - - -
Bra002902 (XYLT)
 2.1 - 2.41 2.12 1.19 - 0.11 - 1.62 -0.1 - - 1.87 0.99 -1.28 - -0.19 - 0.57 - -2.65 -0.13 -2.52 - - - - - - - -
3.62 - - - 1.57 - - - 1.06 0.97 - - - - 1.25 - 1.01 1.2 0.73 - - - - - 1.26 - -0.07 - - - -
Bra003316 (MTP8)
 2.17 0.4 0.66 1.99 - 1.38 -0.78 - 0.19 -0.62 0.53 - - 1.28 -1.34 - -1.43 2.1 - - - - 0.97 - -0.65 -1.61 - -0.42 - 0.79 -1.49
Bra003795 (CYP98A8)
 - - 3.78 3.23 - - - - - - - - - - - - - - - - - - - - - - - - - - 2.98
2.61 1.69 2.51 1.83 2.22 -0.98 1.14 -2.1 -3.45 - -3.29 - -0.45 - -1.4 - -0.61 - 0.61 -2.21 -1.28 -1.08 - - - - -3.31 - - -3.22 -
3.91 - - - - - - - - - - -12.15 - - - - - - 3.2 - - 2.77 - - - - - - - - -
3.43 - 2.72 1.37 -0.12 1.51 - - - - - - - 0.02 - - - 2.16 - - - - - 0.82 - - - - - - -
3.41 - - - - - - - - - - - - - - - - - - - 3.38 - - - - - - - - - 3.31
3.14 - 0.35 1.61 -1.35 - -0.13 - 0.63 - - - 0.41 -1.34 -0.96 1.08 0.69 0.63 -1.52 - - - 0.94 - - - 0.89 -1.23 0.91 -0.53 -1.39
Bra010873 (PG45)
 3.5 1.04 - - - - 0.12 - -0.13 - - - 1.27 2.06 - - - -0.09 2.24 - - - - - - - 0.59 - - 0.36 -0.7
3.5 - - 2.58 - - - - 0.78 - - - - - 2.0 - - - - - - - 2.25 - - 0.64 - - - - 0.72
2.47 -0.38 2.64 2.63 -0.52 0.64 -0.59 -1.81 -0.34 -1.78 -0.33 - -0.01 0.04 -0.15 -0.56 -2.68 - 1.08 -1.13 -0.76 -1.8 - - - - - - - - -
1.9 - 3.31 2.78 - - - - - - - - - - 2.87 - - - - - 0.62 - - - - - - - 0.69 - -
4.01 - - - - - - - - - - - 3.9 - - - - - - - - - - - - - - - - - -
Bra017775 (HAM4)
 4.38 - - - - - - - 3.34 - - - - - - - - - - - - - - - - - - - - - -
Bra017790 (OEE1)
 - - 2.59 3.23 - -0.61 -0.69 -0.63 - - - - -0.43 - 2.0 -0.37 - -0.7 - 1.04 -0.72 0.39 - - - 0.4 -0.63 0.66 - - -
Bra018279 (CLE5)
 2.24 - 0.7 0.26 - - - - 1.39 0.91 2.04 0.95 1.91 - - 1.18 - - - - 2.23 - - - - - - - - - 1.15
2.27 - 2.43 2.01 1.36 2.29 -2.33 0.02 - - -0.01 -0.91 -1.8 - 0.42 0.17 -0.12 -0.54 -0.09 - -0.32 -1.14 - - - - - - - - -
Bra020545 (PRK4)
 2.35 2.78 - - - 2.58 0.86 -1.84 1.57 1.57 - - - 2.0 - - -0.59 - - - - - -1.52 - - - - - - - -
Bra020815 (COG5)
 1.68 1.92 1.4 1.72 1.03 0.41 -1.17 -1.47 -2.71 -1.56 -1.95 -0.68 -2.92 -0.54 -1.36 -2.07 -2.07 -0.19 -0.74 -1.96 -0.24 -1.88 0.7 0.44 -0.26 -0.9 -1.02 -0.74 0.2 -0.13 -1.03
0.62 0.51 1.22 -0.06 1.18 0.45 -0.32 -0.35 -0.19 -0.02 0.09 -0.19 -0.43 -0.83 -0.67 -1.01 -0.79 -0.39 -0.1 0.06 -0.23 -0.05 -0.29 -0.07 0.15 -0.52 0.48 -0.1 -0.05 -0.57 -0.68
0.66 0.5 -1.95 -1.4 -0.86 1.22 -0.55 -3.56 1.21 -0.12 0.4 -1.29 -0.08 -0.53 -0.13 -0.53 0.1 -2.05 0.21 -0.78 -0.17 -0.19 -1.74 -0.05 0.64 0.89 -0.45 -2.67 -0.35 -0.37 1.84
1.56 0.01 2.95 1.66 - - -0.64 - - -0.36 -0.49 - -0.24 - - 1.86 - -0.46 - - 0.66 - - - - 0.64 1.18 -0.13 1.34 - -
1.9 1.27 2.57 1.68 -1.58 -9.93 -1.44 - - - 1.86 -2.21 - 0.66 -1.78 -0.05 -0.34 -0.69 -0.86 1.41 0.34 -2.3 0.24 -3.4 - -3.25 -1.69 - - -2.24 -1.54
3.0 - - - - - - - - - - - 1.87 1.98 - - - 3.16 - - - - 2.68 - - - - - - - -
2.37 1.87 1.55 0.83 -2.8 -0.67 0.43 0.24 -1.74 -2.11 -2.15 -0.86 0.22 -4.86 -2.04 -0.82 0.17 -5.72 -4.82 -2.32 -2.77 -0.86 -1.33 -0.5 -0.32 0.74 0.02 -0.25 0.44 -0.74 0.48
Bra024844 (CYCJ18)
 0.93 -1.0 - -0.0 1.57 -0.34 -0.49 - -1.47 - -0.54 - - 0.59 2.31 - - 2.54 -1.56 - - 1.68 0.27 - 0.64 - -0.35 0.45 -1.14 -1.21 -1.12
- 3.37 - - - 1.99 - - - 3.0 - - - - - - - - - - 2.02 - - - - - - 2.21 - - -
Bra025199 (CYP71B34)
 3.78 - - - - - 1.37 - 2.54 1.46 - - - - 1.64 - - - - - - - - - - - - - 1.57 - -
1.78 - - 0.12 - -0.6 0.53 -0.12 - - 0.51 -0.81 0.23 - 1.74 - -1.61 2.05 -0.26 -1.94 - 1.79 -1.19 - - 2.15 - - -0.6 0.04 0.44
2.76 0.87 -7.26 1.04 0.69 -0.82 - 1.88 0.94 -0.37 -0.4 - - - 0.52 - -5.48 - -2.16 1.48 -0.55 - - -25.45 -13.44 -0.99 0.32 -3.69 0.89 -0.18 0.38
2.42 - 3.36 2.33 - -0.99 2.46 - -0.05 - 0.61 - - - - 0.34 - -0.69 - - - - - - - - - - - - -
Bra027634 (MAN7)
 2.04 2.67 2.14 2.1 - -1.16 1.56 -1.91 - - - - - - - - - - -1.7 0.72 - - 0.66 - -1.91 - -0.97 -0.1 0.24 0.19 -0.77
Bra028080 (PUB50)
 -0.84 0.58 -1.43 -1.88 -0.4 0.95 -0.01 -1.78 1.41 0.03 1.47 0.1 1.06 0.19 -0.05 -0.89 0.3 -1.23 -0.03 0.42 0.15 0.24 -3.25 -1.65 -0.74 -0.48 -0.28 -2.49 -0.8 -0.85 0.96
Bra028081 (MORC4)
 3.45 - 3.71 - 1.2 - - - 2.22 - - - - - - - - - - - - - - - - - - - - - -
Bra028216 (LPPepsilon1)
 3.94 - - 3.97 - - - - - - - - - - - - - - - - - - - - - - - - - - -
Bra029395 (PRLIP6)
 1.43 0.99 1.21 -0.35 -0.14 -0.54 -0.72 -0.64 -1.39 -0.21 -0.16 -0.8 -0.76 -0.41 -0.68 -0.08 0.34 -0.23 -0.11 0.62 -0.23 0.57 1.31 -0.1 -0.54 -0.37 -0.25 -0.74 -0.74 -1.37 -0.97
1.88 1.19 1.69 2.01 1.4 -0.63 0.22 - - -1.56 -0.78 -1.53 -1.4 - - -1.41 -1.52 - 0.56 -0.52 0.39 - -0.01 - - 0.92 - -1.49 0.04 1.15 -0.03
Bra029454 (MEKK4)
 0.33 - 2.72 2.04 2.4 -0.08 - - - 0.67 2.09 - - - 1.87 - - - 0.87 - - - - - 0.59 - - - - - -
Bra030545 (GRXS13)
 3.43 - - - 2.46 0.92 - - - - - - 1.26 - - - - - - - - - - - - - 1.23 - - - 3.02
3.42 - 2.34 - - 0.76 - 0.62 - - - - 0.93 - - - - - - - 1.79 1.68 - - 1.79 - - - - - -
Bra031150 (MBD9)
 -0.77 1.2 3.27 2.72 1.01 -0.95 - - - - - - -0.53 -0.48 1.05 - 1.52 - 0.51 - - - 0.1 -0.88 - - - - - - -
2.89 0.8 -0.48 - -0.35 -2.22 -1.39 -0.51 1.78 0.34 1.07 -2.01 -0.01 -2.11 -1.92 0.2 -2.13 0.68 - 1.23 -1.28 -1.65 -2.23 - -0.42 - -0.84 - 0.52 -0.04 -0.94
Bra032302 (UNE1)
 1.17 -0.03 0.98 0.36 0.59 0.26 -0.55 -0.48 0.44 -0.65 -0.66 0.0 1.06 0.47 0.9 -1.01 0.04 0.49 0.61 -0.74 -0.56 -1.57 -0.99 0.62 -0.79 0.25 -3.64 -1.55 -1.58 -2.72 -0.6
Bra032438 (ADS1.2)
 4.11 - - - - - - - - - - - 1.94 - - - - 2.7 - - - - 1.77 - - - - - - - -
Bra033188 (REF6)
 4.18 3.69 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Bra034194 (SKIP19)
 2.01 0.52 - - 2.03 0.37 - - -0.84 - - -0.74 2.58 -1.84 - - 0.99 -0.43 -2.03 0.09 -1.05 -1.1 1.53 - - 1.47 - 0.31 - -1.82 -0.79
1.88 -3.36 1.93 0.93 -3.61 - -1.71 -0.54 -2.45 - 0.41 -0.3 -0.39 -2.18 -0.07 -3.34 0.15 -1.53 - -1.45 -0.49 -3.62 -0.69 0.41 1.14 1.06 1.03 -0.12 0.52 0.51 0.49
4.06 - - - 3.84 - - - - - - - - - - - - - - - - - - - - - - - - - -
-0.62 -1.61 0.54 0.42 -0.41 1.17 0.68 -2.4 1.18 -1.63 1.22 -1.36 1.06 -0.33 0.05 -0.96 0.05 -1.91 -0.07 1.55 0.25 -0.81 - -1.44 -0.07 - -0.79 0.44 -2.28 -1.22 0.91
2.09 1.81 - 1.9 0.96 1.22 0.59 - 2.35 -1.57 -1.52 -0.44 - - -0.15 0.25 - -0.08 1.04 1.07 - - - - - - - - - - -
Bra037373 (NOP56)
 3.77 - 1.42 - 1.41 1.45 - - - - - - - - - - 1.5 - - - - - - - - - - 2.68 - - -
0.02 -1.24 0.02 - 0.52 1.09 0.14 -1.65 1.53 -1.8 0.6 1.13 0.22 -0.08 -0.83 -1.55 0.13 -0.11 0.13 0.12 0.92 -1.8 - -0.16 0.12 0.29 -1.56 -0.79 -2.52 - 1.59
Bra037693 (THAL)
 - 1.36 3.28 - 1.22 - 2.54 - - - - - - - - - - - - - - 3.23 - - - - - - - - 0.21
Bra038770 (PUMPKIN)
 3.29 0.9 2.3 2.37 - - - - - - 0.39 - - - - 0.21 - 1.96 - - - - - 0.77 0.27 - - - - - -
Bra039389 (SKS13)
 0.43 0.16 1.97 2.3 - 0.52 -0.06 -1.41 0.35 - -1.38 1.58 0.72 - -2.08 0.29 0.45 - - -2.24 0.57 1.05 - - -1.3 1.04 -0.21 - -2.14 -2.08 -2.07
0.65 0.3 0.31 0.39 0.36 1.02 -0.1 -2.05 1.47 -0.72 0.81 -1.4 -0.53 0.53 -1.63 0.17 0.16 -0.38 -0.4 0.66 0.69 0.03 -1.96 -1.54 -1.5 -1.14 -0.52 -2.02 -0.62 -2.16 1.0
Bra039820 (MEL3)
 4.06 - - - 1.87 - - - - - - - - - - - - - - - - - - - - - 1.68 - - - 2.91
1.93 -0.14 -1.51 -0.8 -0.36 0.93 -1.32 -2.75 1.32 - 0.86 0.68 2.02 - 0.05 -0.29 -0.3 -1.14 0.63 - -0.17 0.47 -1.2 -0.84 -0.92 0.48 - -0.56 -0.35 -2.69 -0.59
Bra040876 (SPA3)
 1.8 - 2.78 0.95 0.73 - - - - 1.54 - -0.11 - - 0.92 0.78 2.12 1.37 - - - -2.68 - - - - 0.71 - - -0.21 -
Bra040944 (BSK7)
 3.86 - - - 3.03 1.96 - - - - - - - - - 2.14 - - - - - - - - - - - - - - -
Bra041135 (ARS1)
 4.25 - - - - 3.2 - - - 1.46 - - - - - - - - - - - - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.