Heatmap: Cluster_93 (Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	Light: 260 uE m-2 s-1	Light: 195 uE m-2 s-1	Light: 130 uE m-2 s-1 (Control)	Light: 65 uE m-2 s-1	Photoperiod: L24	Photoperiod: L18D6	Photoperiod: L13D11 (Control)	Photoperiod: L8D16	RBW: 4:1:1 (Control)	RBW: 4:1:0	RBW: 3:1:1	RBW: 3:1:0	Nitrogen: 0%	Nitrogen: 25%	Nitrogen: 50%	Nitrogen: 100% (Control)	Nitrogen: 150%	Phosphorous: 0%	Phosphorous: 25%	Phosphorous: 50%	Phosphorous: 100% (Control)	Phosphorous: 150%	Potassium: 0%	Potassium: 25%	Potassium: 50%	Potassium: 100% (Control)	Potassium: 150%	Temperature: 20°C (Control)	Temperature: 25°C	Temperature: 30°C
Spov3_C0002.00101 (HSP70)	-0.09	0.36	-0.46	-0.32	-0.95	0.08	-0.01	0.16	0.26	1.27	-0.41	0.68	-0.63	0.26	0.54	-0.14	-0.34	-0.95	0.31	-0.26	0.67	-0.74	-1.08	-0.53	-1.13	0.14	0.09	0.34	-0.01	-0.39
Spov3_C0010.00019 (FLU)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-
Spov3_C0010.00035 (HSR3)	-	-	0.93	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.71	-	-	-	0.94	-	-	-	-	-
Spov3_C0010.00037 (GCN4)	0.54	0.6	-	-2.39	-1.18	-0.74	-2.19	-0.16	0.54	-1.24	-0.14	-	-2.03	0.84	-	1.13	-0.5	2.42	-0.36	-2.34	1.46	-1.35	-0.77	1.05	0.03	0.31	-2.34	0.24	-2.03	-0.07
Spov3_C0014.00039	-0.9	-	-	0.04	-	0.72	-	0.04	2.34	-0.0	-0.98	-	1.94	0.95	-0.12	0.99	-	1.78	-	0.05	1.72	0.1	0.78	-	-	-	-	-	-	-
Spov3_C0020.00034 (VAC1)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.51	-	-	-9.93	-	2.86	-	-	-	-
Spov3_C0034.00006 (ERU)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-
Spov3_C0047.00005 (DELTA-OAT)	1.42	1.57	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.18	-	-	3.33	-	-	2.53	-	-	-	2.65	-	-
Spov3_C0056.00002	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-
Spov3_C0059.00012	0.54	0.41	0.37	-0.97	-0.71	-	-0.54	-0.63	-	1.43	1.9	0.23	-0.6	0.78	-	-0.46	0.22	-	-	-	2.59	-	-	-	-	-	1.4	0.83	-0.76	-0.78
Spov3_C0074.00005 (MRP5)	-8.23	-	-7.4	-9.87	-	-18.32	-	3.06	-	-	-	-11.56	-14.38	-	-	-	-	2.73	-14.7	-	3.91	-14.48	-	-	-	-9.13	-12.97	-	-7.45	-10.82
Spov3_C0079.00012	-	-	-	-	1.76	-	0.7	-	-	-	-	0.77	0.95	-	-	-	-	-	2.19	-	3.18	-	-	-	-	-	-	1.99	0.92	0.87
Spov3_C0901.00003	-	-	-	-	2.08	-	-	-	-	-	-	1.84	-	-	2.33	-	-	3.46	-	-	2.62	-	-	-	-	-	-	-	-	-
Spov3_chr1.00328 (VIM4)	-	-	-	-	-	-	-	-	-	2.99	-	-	-	-	-	-	-	-	-	-	3.83	-	-	-	-	-19.76	-	2.96	-	-
Spov3_chr1.01088 (MISF68)	-	-	1.68	2.6	-	-	0.75	0.66	-	0.53	-	-	-	-	0.43	-	1.48	-	-	-	3.12	-	0.49	-	-	-	-	0.83	-	-
Spov3_chr1.01526	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-
Spov3_chr1.02188	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-
Spov3_chr1.03055	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-
Spov3_chr1.03228 (AtFDB6)	-0.35	2.69	1.55	-0.53	-0.06	-0.29	-	-	-	-	-	0.92	-	-0.74	-0.14	-	-	-	-	-	2.23	-0.29	-0.14	1.03	-	-0.33	1.36	-0.39	0.48	-
Spov3_chr1.03452	-	-	-	-	1.66	-	-	0.78	-	-	-	0.87	1.06	0.85	2.4	-	-	-	-	-	3.16	0.85	-	-	0.93	0.58	-	-	-	-
Spov3_chr1.03465 (PSAT1)	-1.58	-0.98	0.39	-1.64	0.75	0.37	-1.95	0.74	-0.42	1.93	-0.6	-	-0.14	-1.21	0.97	0.37	-	-	0.05	-0.63	2.08	0.14	-	-2.7	-2.75	-0.56	0.13	1.5	-0.75	-1.73
Spov3_chr1.04501	-	-	-	-	-	-	1.19	1.85	1.46	0.85	1.1	-	-	1.14	0.26	-	-0.51	1.79	-	-	2.29	-	-	-	-	-	2.23	-	-	-1.88
Spov3_chr1.04704 (EMB3127)	-	2.35	-	-	-	1.11	-	-	1.25	-	-	-	-	2.25	-	-	-	-	-	-	3.54	-	-	-	-	1.98	-	-	-	-
Spov3_chr1.04736 (ELF3)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-
Spov3_chr1.05214	1.43	-	-	-	2.71	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.71	-	2.3	-	-	1.46	-	-	-	-
Spov3_chr2.02108	-	1.47	-	-	-	2.26	-	-	-	-	-	-	-	1.37	-	-	-	-	-	-	3.34	2.72	-	-	-	-	-	1.64	-	-
Spov3_chr2.02191 (CYP87A2)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.6	-	-	-	-	-	2.54	-	-	-
Spov3_chr2.02555 (VUP4)	-	1.68	-	-	-	-	1.38	2.74	-	-	-	-	-	-	-	-	-	-	-	-	4.13	-	-	-	-	-	-	-	-	-
Spov3_chr2.02827 (FAR1)	-	2.51	-	-	-	-	-	-	-	0.53	-	-	0.57	1.98	-	-	-	-	-	-	3.29	-	-	-	-	1.83	1.26	0.8	-	-
Spov3_chr2.03473	-	-	-	1.29	-	-	-	-	-	-	-	-	-	-	1.39	-	3.77	-	-	-	3.5	-	-	-	-	-	-	-	-	-
Spov3_chr2.04260	0.11	0.19	0.97	-	0.1	0.96	-	1.19	-	-	-	0.11	-	-	-	-	-	-	-	-	2.49	-0.04	-	0.35	-	-	1.27	2.59	0.3	0.94
Spov3_chr2.04559 (NET2C)	-	-	-	-	2.63	-	-	-	-	-	-	-	1.78	-	-	-	-	-	-	-	3.59	-	-	-	-	2.36	-	-	1.67	-
Spov3_chr2.04831	0.3	-	-	0.36	0.3	-	0.22	-	-	-	-	-	-	-	-	0.76	-	-	0.34	-	3.19	2.33	1.96	-	-	-	1.48	-	0.38	-
Spov3_chr2.04895	1.3	-	-	-	-	0.88	1.26	-	-	-	1.15	-	-	-	2.64	-	-	-	-	-	3.08	-	-	1.01	-	-	1.18	-	-	1.09
Spov3_chr2.05228 (CRK33)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-20.44	3.39	4.29	-	-	-	-	-	-	-	-	-
Spov3_chr2.05358	-0.38	2.07	0.45	-0.35	1.15	-0.55	-0.63	-0.33	-0.45	-	-0.26	-	-	-0.33	1.04	-0.44	-	0.97	-	-	2.53	-0.69	-	-	0.57	-	0.4	-	-0.22	0.44
Spov3_chr2.05681 (SAW1)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-
Spov3_chr3.00292 (CLCg)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-
Spov3_chr3.00382	-0.14	1.14	0.34	-5.49	0.84	-	-	-3.03	-	0.34	-	-0.39	0.63	-	1.82	-	-	2.51	-0.04	-	1.75	-	-	-	-	1.73	-0.59	0.74	-0.23	-
Spov3_chr3.00566 (CRP1)	1.43	0.4	0.39	-	-	-0.85	-0.55	-0.57	-	-0.56	0.48	1.18	-	1.29	-0.79	-	0.97	-	1.12	-	2.06	1.04	-0.79	-	-	1.65	-0.64	-0.5	-	-
Spov3_chr3.00889 (PHS1)	-0.55	-0.49	-	-0.33	-1.24	0.46	0.41	0.74	0.04	-2.14	-0.01	-0.6	-	0.74	0.79	1.29	0.35	-	-1.07	-0.23	0.77	0.9	-	0.53	-	1.0	0.72	0.26	-0.58	0.2
Spov3_chr3.00890 (PHS1)	-0.55	-0.49	-	-0.33	-1.24	0.46	0.41	0.74	0.04	-2.14	-0.01	-0.6	-	0.74	0.79	1.29	0.35	-	-1.07	-0.23	0.77	0.9	-	0.53	-	1.0	0.72	0.26	-0.58	0.2
Spov3_chr3.01347	-	-	-	-	-	-	-	-	-	-	3.78	-	-	-	-	-	-	-	-	-	4.03	-	-	-	-	-	-	-	-	-
Spov3_chr3.01363 (BRH1)	-1.82	0.37	-	-1.56	-	0.97	-1.42	0.34	-21.38	1.38	-0.84	-0.27	-0.14	0.84	0.29	0.13	0.32	-	-0.78	-2.27	1.45	0.33	-1.74	1.01	-	-0.02	1.0	0.8	-	1.29
Spov3_chr3.01537 (BRP1)	-	-	0.65	-	0.65	-	-	-	-	-	-	-	-	-	-	-	-	3.97	-	-	2.65	-	-	-	-	-	0.76	0.76	-	0.6
Spov3_chr3.03482	-1.6	-1.42	-	-	-0.03	1.31	-	-	0.23	-	-0.21	-1.34	0.38	2.3	-	-1.33	-1.45	1.61	1.38	-1.46	1.62	-1.54	1.89	-1.22	-1.53	-1.65	0.87	-	-1.52	-
Spov3_chr3.03785 (RH11)	0.26	-0.47	-0.22	0.03	-0.18	-0.36	-0.19	0.11	-0.17	-0.13	0.44	0.03	-0.18	0.76	0.09	0.23	0.79	-0.26	0.04	-0.58	0.46	0.2	-0.84	0.49	-0.14	-0.2	-0.25	0.22	-1.02	-0.8
Spov3_chr3.04560 (FTIP3)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-
Spov3_chr4.00568	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.89	-	-	3.92	-	-	-	-	-	-	-	-	-
Spov3_chr4.01613 (APS4)	-	-	-	-	-	-	-	-	2.53	-	2.74	-	-	-	-	-	-	-	-	-	4.13	-	-	-	-	-	-	-	-	-
Spov3_chr4.01669	-	-	-	-	-	-	-	-	-0.88	-	-	-	0.92	-	3.1	-	-	-	-	-	3.46	-	-12.22	-	-	2.99	-	-	-4.31	-12.53
Spov3_chr4.02128 (FH3)	-	-	-	-	2.21	-	-	-	-	-	2.92	-	-	-	-	2.79	-	-	-	-	2.76	-	2.04	-	-	-	-	-	-	-
Spov3_chr4.04457 (CYP82F1)	-1.2	0.91	-	1.3	-1.13	-0.48	0.48	-0.12	-	-1.04	-0.16	-1.35	-	0.97	-1.32	1.54	2.04	-0.27	-	-	2.04	-	-	-0.42	0.16	0.17	-0.51	-	0.47	-0.8
Spov3_chr5.00403 (Hsp70-2)	-	-	-	-	-	-	-	-	-	-	3.42	-	-	-	-	-	-	-	-	-	4.27	-	-	-	-	-	-	-	-	-
Spov3_chr5.00717	-	-	-	-	-	-	-	-	1.13	2.27	-	-	-	1.34	-	-	-	3.32	-	1.94	2.17	-	-	-	-	1.1	-	-	-	-
Spov3_chr5.00743 (ATF2)	0.92	0.67	-1.6	0.61	0.7	-	-	-	-	-	0.87	-0.32	0.48	-0.26	-1.4	-0.3	-	1.67	-	-1.44	2.1	-1.35	1.43	0.64	0.21	-0.27	-	-1.34	-0.55	0.53
Spov3_chr5.02309 (AtDOA1)	-	-	1.18	-	-	-	-	-	-	-	-	2.19	-	-	-	-	-	-	-	-	2.97	-	1.84	-	-	-	2.09	2.91	-	-
Spov3_chr5.02381 (SHD)	0.5	-	0.5	0.48	0.31	-	2.59	1.54	-	-	-	0.49	-	-	-	0.39	0.3	-	-	-	2.94	-	0.31	0.55	-	-	-	-	0.36	-
Spov3_chr5.02748	-1.46	0.93	0.23	-0.44	-0.68	1.37	0.56	-1.29	-2.22	0.12	-0.42	-0.64	-2.04	0.12	-0.85	-0.06	-0.71	0.17	-1.25	-0.31	1.69	0.93	-1.26	-1.19	-0.11	0.42	-1.35	0.55	-0.31	0.4
Spov3_chr5.03216 (DUF179)	-	-	-	-	-	-	-	-	-	-	-	-	-	3.92	-	-	-	-	-	-	3.89	-	-	-	-	-	-	-	-	-
Spov3_chr6.01315	-	-	-	-	2.88	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.5	-	-	-	-	-	-	-	-	-
Spov3_chr6.01677 (WIG)	-	-	-	-	3.92	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.89	-	-	-	-	-	-	-	-	-
Spov3_chr6.02237 (DA3)	0.69	-	-	1.81	0.27	-	-	-	0.86	-	-	-	-	-	-	-	-	-	-	-	3.35	1.57	-	-	-	-	-	1.86	2.34	-
Spov3_chr6.02719	2.74	-	-	-	-	2.46	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.16	-	-	-	-	-	-	-	-	-
Spov3_chr6.02936 (MUS)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-
Spov3_S06.00038 (MTK)	-	1.75	-	0.82	-	-	0.6	1.96	-	-	-	-	-	0.93	-	2.29	0.45	-	-	0.16	3.34	-	-	-	-	-	-	-	-	-
Spov3_S12.00019	-	-	-	-	-	-	-	-	-	-	-	-	-	-1.38	-	-0.6	-0.92	-0.87	-	-	4.53	-	-	1.61	-	-0.52	-	-	-	-0.05

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.