- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Light: 260 uE m-2 s-1 | Light: 195 uE m-2 s-1 | Light: 130 uE m-2 s-1 (Control) | Light: 65 uE m-2 s-1 | Photoperiod: L24 | Photoperiod: L18D6 | Photoperiod: L13D11 (Control) | Photoperiod: L8D16 | RBW: 4:1:1 (Control) | RBW: 4:1:0 | RBW: 3:1:1 | RBW: 3:1:0 | Nitrogen: 0% | Nitrogen: 25% | Nitrogen: 50% | Nitrogen: 100% (Control) | Nitrogen: 150% | Phosphorous: 0% | Phosphorous: 25% | Phosphorous: 50% | Phosphorous: 100% (Control) | Phosphorous: 150% | Potassium: 0% | Potassium: 25% | Potassium: 50% | Potassium: 100% (Control) | Potassium: 150% | Temperature: 20°C (Control) | Temperature: 25°C | Temperature: 30°C |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 4.91 | - | - | - | - | - | - | - | |
| 1.0 | 1.68 | - | - | -0.11 | - | 0.97 | - | - | - | - | 0.85 | -0.04 | - | - | - | -0.13 | -0.25 | - | - | -0.05 | - | 3.83 | - | - | -0.0 | - | 0.23 | - | - | |
Spov3_C0009.00001 (BGLU33) | - | - | - | - | -2.54 | -0.25 | - | - | - | - | -1.99 | - | 0.54 | - | - | - | - | -0.58 | - | - | - | - | 4.68 | - | - | - | - | - | - | -0.04 |
Spov3_C0009.00074 (PEN6) | 0.63 | -0.4 | -1.68 | -1.44 | 0.39 | - | -0.43 | - | - | -1.61 | -2.57 | - | 0.12 | -1.56 | - | - | - | 1.41 | - | - | -0.39 | -1.63 | 4.27 | - | - | - | - | - | - | - |
Spov3_C0010.00036 (GSTU8) | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.32 | - | - | - | - | 4.85 | - | - | - | - | - | - | - |
Spov3_C0034.00011 (ATSGS1) | -0.22 | - | - | -0.18 | 1.65 | - | - | - | 0.84 | - | - | -1.26 | -0.78 | - | 1.96 | -0.16 | -0.33 | -1.45 | - | -0.37 | - | - | 3.76 | -0.34 | - | - | -1.59 | - | -0.05 | - |
Spov3_C0064.00002 (RLK4) | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 4.91 | - | - | - | - | - | - | - |
| -0.1 | -0.15 | -0.72 | -0.35 | -1.25 | -1.54 | -1.9 | -0.91 | -2.71 | -1.93 | -0.54 | -1.61 | -0.53 | -0.95 | -0.49 | -1.83 | -0.65 | -0.33 | -1.59 | -0.77 | -0.78 | -0.71 | 3.82 | -1.05 | -0.55 | -0.82 | -0.13 | -1.67 | -1.0 | -1.17 | |
Spov3_chr1.00013 (NHL13) | - | - | - | - | - | - | - | - | - | - | 0.58 | 0.47 | - | - | - | - | - | - | - | - | - | - | 4.76 | - | - | - | - | - | - | - |
Spov3_chr1.00057 (RLK4) | 1.42 | 1.3 | -0.97 | - | 1.66 | - | -2.31 | -2.24 | -0.86 | -2.16 | - | - | - | 0.12 | -2.21 | - | -0.44 | 1.19 | - | - | - | - | 3.76 | - | - | -1.08 | -0.08 | - | -0.57 | - |
Spov3_chr1.00446 (STP1) | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 4.81 | - | - | 0.97 | - | - | - | - |
| - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.33 | - | - | 1.27 | - | - | - | - | 4.65 | - | - | - | - | - | - | - | |
Spov3_chr1.01185 (SRP3) | -0.3 | -0.25 | -0.23 | -0.37 | -0.12 | -0.13 | -0.24 | -0.32 | -0.54 | -0.57 | -0.43 | -0.41 | -0.38 | 0.05 | 0.03 | -0.25 | -0.24 | 0.19 | -0.37 | -0.37 | -0.38 | -0.38 | 2.4 | -0.32 | -0.49 | -0.43 | -0.38 | -0.02 | -0.13 | 0.53 |
Spov3_chr1.01244 (NTP6) | -0.6 | -1.18 | -1.29 | - | - | -0.19 | -0.77 | - | - | 0.04 | - | -0.75 | 0.94 | 1.25 | -0.11 | -0.69 | -0.4 | -0.95 | -0.81 | - | -1.34 | 0.24 | 3.63 | -2.43 | - | 0.52 | -0.65 | - | - | 0.57 |
Spov3_chr1.01797 (ChlADR) | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -1.31 | -2.41 | - | - | - | 4.88 | - | - | - | - | - | - | - |
| - | - | - | - | - | 2.02 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 4.45 | - | - | 2.05 | - | - | - | - | |
Spov3_chr1.03665 (NFS1) | - | - | - | - | -1.98 | - | - | - | - | - | - | - | - | - | - | - | - | -0.68 | - | - | - | - | 4.86 | - | - | - | - | - | - | - |
Spov3_chr1.03927 (KUP11) | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 4.91 | - | - | - | - | - | - | - |
| -0.61 | -0.4 | -0.84 | -0.41 | 0.15 | -1.42 | -1.18 | -1.08 | -0.92 | -0.48 | -0.89 | -0.78 | -0.66 | -1.08 | -1.74 | -1.28 | -1.44 | -0.61 | -1.02 | -0.89 | -0.76 | -0.69 | 3.61 | -0.22 | -0.4 | -0.63 | -0.27 | -0.16 | -0.55 | -0.85 | |
Spov3_chr1.04088 (BOR4) | 0.22 | 0.53 | -0.3 | 0.88 | -0.17 | -3.66 | -2.86 | -0.61 | -2.02 | 0.06 | -0.98 | -0.54 | 0.6 | -0.96 | -1.6 | -1.84 | -1.94 | 0.64 | -1.02 | -1.5 | -0.55 | -0.66 | 2.94 | 0.12 | -0.3 | -0.88 | 0.15 | 0.53 | -0.49 | -1.09 |
| -1.44 | -1.83 | -1.41 | -1.71 | -0.92 | -2.78 | -2.06 | -3.04 | -2.54 | -1.68 | -1.38 | -1.69 | -1.03 | -1.77 | -2.0 | -2.08 | -3.63 | 0.35 | -3.13 | -2.04 | -3.1 | -1.93 | 4.35 | -2.15 | -1.18 | -0.7 | -1.32 | -1.26 | -1.02 | -3.25 | |
| - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 4.91 | - | - | - | - | - | - | - | |
Spov3_chr1.04623 (RsmD) | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 4.91 | - | - | - | - | - | - | - |
| -2.2 | -2.91 | -2.01 | - | -1.23 | -2.9 | -2.9 | -3.24 | - | -5.29 | - | - | -0.05 | 0.72 | -0.16 | -4.23 | -2.91 | 0.88 | -5.13 | -1.58 | - | -5.42 | 4.44 | -4.05 | -3.18 | -5.28 | -3.03 | -2.3 | -1.7 | -2.8 | |
Spov3_chr1.05018 (CYP76C5) | - | - | - | - | - | - | - | - | - | - | - | - | -3.53 | - | -2.67 | - | - | 2.49 | - | - | - | - | 4.59 | - | - | - | - | - | - | - |
| - | - | - | - | 0.72 | -0.14 | - | - | - | - | - | - | - | 1.48 | - | - | - | -0.21 | - | - | - | - | 4.57 | - | - | - | - | - | - | - | |
Spov3_chr2.00053 (SIP1A) | 0.79 | -2.42 | -2.74 | -1.55 | -0.15 | -1.75 | -2.8 | -2.52 | -1.71 | - | - | - | -0.97 | 0.46 | 0.59 | - | - | -1.79 | - | - | - | - | 4.47 | - | - | - | - | - | - | - |
Spov3_chr2.00193 (JAL34) | 0.69 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.73 | - | - | - | - | 4.52 | - | - | 1.09 | - | - | - | - |
| - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 4.91 | - | - | - | - | - | - | - | |
Spov3_chr2.01655 (GST16) | - | - | - | - | - | - | - | - | - | - | - | - | -0.93 | - | - | - | - | 2.85 | - | - | - | - | 4.48 | - | - | - | - | - | - | - |
Spov3_chr2.02368 (EMB1789) | -0.25 | 0.03 | -0.24 | 0.15 | -1.52 | -2.66 | -1.79 | -0.42 | -1.36 | -1.35 | -0.01 | -0.52 | 0.33 | -1.0 | -1.64 | -1.78 | -1.63 | 0.09 | -0.36 | -0.93 | -0.43 | 0.02 | 3.09 | -0.15 | 0.52 | -2.08 | 0.32 | 0.12 | 0.43 | -0.71 |
Spov3_chr2.03265 (F3H) | -3.24 | -5.25 | -5.26 | - | -5.64 | - | - | - | - | -3.36 | - | - | -2.29 | -3.24 | -3.91 | - | - | 1.69 | - | - | - | -5.61 | 4.7 | - | - | - | - | - | -3.72 | - |
Spov3_chr2.04548 (STIP) | - | 0.46 | - | - | - | - | - | - | - | - | - | - | 2.37 | - | - | - | - | 0.04 | - | - | - | 0.02 | 4.42 | - | - | - | - | - | - | - |
| -4.08 | -4.17 | - | -7.54 | -5.41 | - | - | -7.42 | - | -5.77 | - | - | -3.94 | -4.92 | -3.52 | - | -7.24 | 0.96 | - | - | -6.13 | - | 4.79 | -5.48 | -7.36 | -7.42 | -5.17 | -6.13 | -5.68 | - | |
Spov3_chr3.00407 (NDB3) | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 4.91 | - | - | - | - | - | - | - |
| -0.76 | -1.36 | -2.84 | -2.61 | -1.18 | -1.31 | -1.43 | -2.0 | -2.49 | -2.57 | -2.91 | -2.47 | -0.5 | 1.05 | -0.79 | -2.12 | -2.27 | 2.23 | -1.85 | -2.02 | -2.8 | -2.31 | 3.98 | -2.12 | -2.8 | -2.4 | -2.24 | -3.22 | -1.62 | -2.36 | |
Spov3_chr3.00932 (BRH1) | - | -0.02 | - | -3.97 | - | - | - | - | - | 1.03 | -0.97 | - | 0.77 | - | - | - | - | - | - | - | - | - | 4.32 | - | - | 1.86 | - | - | 0.08 | - |
Spov3_chr3.03483 (STP8) | - | - | - | - | - | - | - | - | - | - | - | - | 1.88 | - | - | - | - | - | - | - | - | - | 4.51 | - | - | 1.85 | - | - | - | - |
Spov3_chr3.03489 (BLP3) | -1.57 | -0.13 | -1.49 | -0.67 | -2.69 | -0.82 | -1.64 | 0.2 | -1.17 | -0.21 | - | -1.15 | - | 0.78 | -2.71 | -1.54 | - | -0.81 | - | -1.78 | -1.66 | -2.88 | 3.96 | -0.09 | -1.16 | - | -0.23 | -0.43 | 0.29 | -0.97 |
Spov3_chr3.03886 (A/N-InvA) | -0.31 | -0.25 | -0.07 | -0.31 | 0.04 | 0.02 | -0.36 | -0.69 | -0.1 | -0.4 | -0.59 | -0.5 | -0.58 | -0.79 | 0.08 | -0.22 | -0.29 | -0.03 | -0.47 | -0.74 | -0.46 | -0.6 | 2.76 | -0.87 | -0.74 | -0.67 | -0.54 | 0.39 | -0.33 | 0.12 |
Spov3_chr3.03903 (MTHFR2) | -3.11 | - | - | - | - | - | - | - | - | -2.3 | - | - | 0.51 | -1.52 | -0.53 | -0.65 | -1.32 | 1.14 | -1.58 | - | -1.44 | -1.65 | 4.43 | - | -3.6 | -0.99 | -0.4 | - | - | - |
| - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 4.91 | - | - | - | - | - | - | - | |
| - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 4.91 | - | - | - | - | - | - | - | |
Spov3_chr3.04660 (STP12) | - | -0.7 | - | - | - | - | - | - | - | - | - | 0.18 | - | - | - | - | - | - | - | - | - | - | 4.82 | - | - | - | - | - | - | - |
| -2.46 | -3.36 | -1.15 | -0.72 | -2.48 | -1.22 | -1.18 | -3.11 | -0.36 | 0.26 | -0.37 | 0.25 | -1.21 | -4.14 | -2.15 | -0.18 | -1.67 | -2.43 | -0.16 | -1.88 | 0.25 | -0.36 | 3.99 | -2.21 | -1.11 | -1.01 | -0.45 | -2.12 | -2.45 | -3.54 | |
| - | - | - | -1.43 | - | - | - | - | -1.59 | -1.62 | - | - | -1.59 | - | -1.72 | - | - | -0.78 | - | - | - | - | 4.68 | - | - | - | -0.49 | - | -1.42 | -0.04 | |
Spov3_chr4.02989 (CML37) | -0.48 | -0.46 | - | - | - | - | - | 0.95 | - | - | - | - | - | - | -0.69 | - | - | - | - | - | - | - | 4.58 | - | -0.55 | - | - | - | 0.49 | - |
Spov3_chr4.03118 (EM1) | -2.92 | -3.45 | -2.36 | -2.84 | -3.25 | -4.79 | -4.23 | - | -5.14 | -3.5 | -5.96 | -3.65 | -1.85 | -2.9 | -3.29 | -5.0 | - | -0.54 | -5.24 | -4.69 | -3.6 | -4.64 | 4.58 | -2.32 | - | -3.47 | -5.23 | -1.41 | -1.56 | 1.45 |
| -0.55 | -1.97 | - | - | -2.17 | - | - | - | - | - | - | - | -2.11 | -2.17 | -2.29 | - | - | -0.78 | - | - | - | - | 4.76 | - | - | - | - | -1.0 | - | - | |
| - | - | - | - | - | - | - | - | - | - | - | - | 0.82 | - | -1.69 | - | - | - | - | - | - | - | 4.8 | - | - | - | - | - | - | - | |
Spov3_chr4.04535 (RIPK) | -3.72 | -3.93 | -5.15 | - | -1.81 | - | - | - | - | -4.08 | -2.06 | - | -5.05 | -2.34 | -3.57 | - | - | 2.33 | -4.09 | - | -5.07 | - | 4.56 | -5.2 | - | -4.01 | - | - | -3.9 | - |
Spov3_chr4.04582 (GLIP3) | -2.03 | -3.55 | -1.08 | -2.27 | -0.63 | -2.9 | -1.54 | -1.62 | - | -3.64 | -1.65 | -1.83 | -2.72 | -0.82 | -1.58 | -2.62 | -1.06 | 2.01 | -1.33 | -1.46 | -1.18 | - | 4.16 | -2.71 | -2.94 | -1.17 | -1.69 | -0.99 | -2.68 | -1.5 |
| - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 4.91 | - | - | - | - | - | - | - | |
| -1.62 | -1.01 | -2.06 | -1.04 | -0.49 | -1.66 | -3.06 | -0.96 | -1.9 | -2.96 | -3.32 | -3.1 | -2.78 | 0.11 | 0.5 | -1.3 | -0.26 | 0.03 | -2.85 | -1.46 | -2.45 | -3.28 | 4.25 | -1.32 | -2.24 | -2.77 | -4.03 | -1.81 | -2.78 | -2.58 | |
| -5.04 | -6.16 | -7.15 | - | -5.36 | - | -7.31 | -4.86 | -6.41 | -4.65 | -5.72 | - | -4.44 | -4.6 | -3.71 | -5.3 | -7.22 | -5.89 | - | -6.58 | - | - | 4.89 | - | - | -5.98 | -7.21 | -7.02 | - | - | |
Spov3_chr5.01745 (PE11) | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 4.91 | - | - | - | - | - | - | - |
| 0.91 | - | - | -0.89 | - | - | 0.04 | - | - | - | - | - | - | - | - | - | - | -1.1 | - | - | - | - | 4.68 | - | - | - | - | - | -0.98 | - | |
Spov3_chr5.03123 (FMO1) | - | - | - | - | - | - | - | - | - | - | - | - | -0.45 | - | - | - | - | 1.31 | - | - | - | - | 4.74 | - | - | - | - | - | - | - |
Spov3_chr6.00314 (ACA12) | -0.33 | 0.17 | -0.62 | -1.29 | -0.25 | -1.65 | -1.33 | -1.06 | -1.07 | -0.78 | -0.67 | -1.2 | -0.53 | -0.89 | -1.04 | -1.02 | -0.23 | 1.21 | -1.02 | -1.4 | -1.43 | -0.86 | 3.53 | -1.15 | -1.59 | -1.11 | -0.51 | -0.53 | -0.51 | -0.32 |
| -0.05 | -0.16 | -0.33 | -0.5 | 0.04 | -0.66 | -0.47 | -0.23 | -0.12 | -0.13 | -0.34 | -0.23 | -0.24 | 0.05 | -0.35 | -0.52 | -0.25 | 0.94 | -0.16 | -0.08 | -0.23 | -0.1 | 2.16 | -0.32 | -0.24 | -0.27 | -0.3 | -0.11 | -0.29 | -0.57 | |
| - | - | -1.33 | - | -1.76 | - | - | - | - | -0.52 | 0.23 | - | - | - | - | - | -0.57 | - | - | -1.61 | - | -0.73 | 4.67 | - | - | - | -1.4 | - | - | - | |
Spov3_chr6.01320 (ERF114) | - | - | - | - | - | - | - | - | - | - | - | - | 0.47 | - | -0.31 | - | - | - | - | - | - | - | 4.8 | - | - | - | - | - | - | - |
Spov3_chr6.01602 (UBP1C) | - | 0.22 | - | - | - | - | - | -1.45 | -0.39 | - | - | - | - | - | - | 0.84 | - | - | - | 0.79 | -0.15 | - | 4.41 | - | - | - | 0.11 | - | - | -0.03 |
Spov3_chr6.01852 (PHD2) | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 4.72 | 1.84 | - | - | - | - | - | - |
Spov3_chr6.02761 (HTR14) | - | - | - | - | -3.42 | -3.64 | - | - | - | - | - | - | - | -1.74 | - | - | -3.46 | - | -3.68 | - | -2.13 | - | 4.86 | - | - | -3.67 | -3.33 | - | - | - |
Spov3_chr6.02850 (MAT2) | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 4.91 | - | - | - | - | - | - | - |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.