Heatmap: Cluster_113 (Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
- - - -2.6 -2.87 - 0.76 2.29 -1.56 - -0.96 - 4.03 - - - -0.35 2.14 - -1.97 -0.85 -2.77 -2.21 - - -2.09 -2.55 -2.71 - - -
- - - - - 0.33 - - -0.43 - -0.14 - 4.33 - - - - 2.44 0.12 - -1.46 - - -1.24 - - - -0.46 - - -
- -3.04 -3.03 -1.98 0.34 -0.4 -0.63 0.6 -1.57 -0.01 -1.66 - 3.78 -3.19 -1.61 -0.68 -0.61 -0.59 -0.05 - -0.98 -0.29 1.85 -1.82 - -1.83 -3.56 -2.28 - -1.37 0.55
- - - -0.73 0.53 - - 0.24 - - -0.43 - 3.69 - 0.61 - - - 1.33 1.27 - - 1.73 1.24 - - - - - -0.41 0.28
- - - - - - - - - - - - 2.91 - - - - 3.57 - - - - - - - - - 2.43 - - 2.63
-2.07 -1.25 -0.82 -1.11 -1.32 -1.04 -1.15 -0.47 -0.4 -1.74 -0.76 -1.02 0.97 -0.29 -0.37 -1.32 -0.36 2.84 0.46 -0.42 -0.14 0.16 0.82 -0.32 0.02 -0.19 -0.46 -0.36 -0.04 -0.22 0.38
- - - - - - - - - - - - 2.76 2.89 - - - 4.07 - - - - - - - - - - - - -
-1.92 -3.13 -1.32 -1.32 -1.11 -1.11 -0.65 -0.41 -0.3 -1.86 -1.54 -0.47 1.33 -1.09 0.07 0.54 0.18 2.68 0.09 0.44 0.27 0.08 -0.46 0.42 0.24 -0.28 -0.11 -1.0 -0.71 -0.49 -0.25
-0.22 -1.08 0.07 -1.82 -1.19 -1.36 -1.23 -0.88 0.11 -0.4 0.33 0.34 1.92 -0.52 0.1 -0.26 -0.19 0.78 0.1 -0.08 0.12 1.07 -3.56 0.39 0.3 -0.23 -0.25 0.05 -0.28 -0.36 0.06
-1.44 -1.27 -0.97 -1.56 -1.87 -0.88 -1.12 -0.49 -0.55 -0.89 -0.17 -0.42 1.77 -0.13 0.07 -0.44 -0.28 2.45 0.34 -0.37 0.18 0.55 -1.48 0.05 0.01 -0.51 -0.3 -0.49 -0.03 -0.62 0.32
-1.32 -1.68 -0.69 -0.98 -0.92 -0.56 -1.6 -1.0 -0.14 -0.11 -0.58 0.46 2.28 0.69 0.37 -1.33 0.45 1.83 -0.38 -0.09 0.09 -0.11 -2.35 -0.22 -0.04 -0.09 -0.68 -0.87 -0.6 -1.98 0.5
-0.84 -2.5 -2.53 -0.79 -1.56 -0.81 -1.9 -0.77 -0.89 -0.86 -0.77 -0.6 1.38 -0.58 -0.41 -0.84 -0.84 2.96 0.67 0.22 -0.29 0.09 0.92 -0.14 -0.53 -0.34 -0.41 -1.29 -0.28 -0.49 -0.18
-0.51 -1.29 -1.17 -0.66 -1.92 -1.27 -0.56 -0.32 -1.44 -0.54 0.22 0.56 2.01 -0.1 0.73 0.74 -0.16 0.34 0.3 0.04 0.13 0.76 -1.38 -0.54 0.46 0.03 -0.56 -0.66 0.23 -1.08 0.05
-1.32 -2.1 -0.6 -0.44 -0.83 -0.12 -0.69 -0.33 -1.12 -1.33 -0.92 -0.12 1.35 -0.04 0.57 0.45 0.18 1.44 0.29 -0.07 0.35 0.39 -0.11 -0.46 -0.05 0.46 -0.48 -0.53 0.09 -0.44 0.66
-1.52 -2.97 -1.7 -2.07 -1.99 -1.52 -1.39 -1.19 -0.37 -0.29 -0.29 0.06 2.28 -1.08 0.52 0.12 0.14 1.28 -0.58 -0.22 -0.2 0.11 0.2 0.47 0.83 -0.2 -0.3 -0.67 -0.3 0.15 0.76
- - - - - - - - - - - - 3.1 - - - - 4.49 - - - - - - - - - - - - -
-1.49 -1.92 -0.81 -2.01 -1.25 -1.1 -0.66 -0.41 -0.74 -1.47 -0.9 -0.79 1.73 0.49 0.29 -0.36 -0.13 2.83 -0.18 -0.4 -0.35 -0.44 -0.15 -0.27 0.0 -0.16 0.08 -1.2 -0.5 -0.66 -0.19
- - - - - - - - - - - - 3.17 - - - - 3.82 - - - - - 2.36 - - - - - - 1.46
- - - - - - - - - -2.64 -0.22 -1.59 3.86 -2.44 0.76 -1.36 0.1 1.86 - 0.7 0.47 -2.31 -1.12 -1.14 -0.65 0.4 -2.78 - - - 0.95
- - -0.14 - -3.23 -3.3 -0.65 - -0.4 -0.2 -0.91 -0.63 2.43 0.72 -0.54 -0.73 -0.49 2.63 -0.46 -0.13 -1.49 -1.75 -1.27 -1.33 0.15 -0.52 -3.12 -0.18 0.33 -3.03 1.96
-2.49 -1.77 -1.49 -0.33 -2.57 -2.0 -1.07 0.6 -0.59 -0.57 -1.13 -0.18 2.1 -1.91 -0.77 -1.13 -0.57 2.75 -0.93 -1.14 0.21 -0.12 -1.58 -1.0 -0.67 -0.57 0.29 -0.36 0.14 0.39 0.77
-1.18 -1.41 -0.92 -0.68 -1.39 -0.99 -1.37 -1.08 -0.01 -0.77 -0.82 -0.25 1.63 -1.01 -0.41 -0.77 -0.85 2.79 -0.39 -0.32 -0.41 -0.06 0.46 0.16 0.06 -0.15 -0.15 -0.76 -0.2 -0.22 -0.04
- - - - -1.21 -0.12 -2.04 - -0.71 - -1.35 0.61 2.91 -2.97 -2.93 0.12 0.17 2.94 -0.75 -2.29 -0.99 1.08 -1.11 -3.19 -0.88 0.12 -0.03 -1.43 - -1.29 0.89
-2.27 -0.51 -1.68 -2.6 -0.76 -1.21 -1.75 -0.29 -0.4 -0.86 -0.8 -0.2 1.26 -0.34 0.09 -0.57 -0.24 2.9 0.06 -0.79 -0.54 -0.22 -0.52 -0.29 -0.03 0.28 0.12 -0.13 -0.6 -0.56 0.32
-0.72 -1.88 -2.8 -2.71 0.27 0.16 -0.41 -0.88 0.35 -0.04 0.02 0.34 1.01 -0.19 0.54 -0.26 0.25 1.2 0.6 0.72 0.14 0.14 -4.34 0.18 0.36 -0.35 0.29 0.3 -1.09 -0.46 -0.41
-0.89 - -1.45 -2.72 -1.27 -0.75 0.13 0.34 -1.22 -0.71 -0.22 -0.36 2.34 -0.48 0.38 0.08 0.22 1.91 -0.39 -0.6 -1.59 0.49 0.45 -0.63 -0.01 -0.78 -0.47 -0.52 -0.11 -0.99 0.32
- - - - - - - -2.0 - - - - 3.7 -1.83 - - - 3.67 - - - - 0.42 - - - - -2.19 - - 1.69
- - - - - - - - - - - - 3.54 - - - - 3.75 - - - - - - - - - - - 0.56 2.16
- - - - - - - - - - - - 4.78 - - - - 1.83 - - - - - - - - - - - - -
- - - -2.8 0.04 0.77 -0.77 -1.39 -0.89 -0.02 -0.76 -0.12 2.51 - 0.18 -1.45 1.08 -1.26 -0.81 -3.38 0.73 -0.46 -0.02 -0.27 -1.27 1.1 -1.66 1.44 -1.14 -0.79 1.53
- - - - - - -0.49 0.18 - - - - 1.84 1.68 0.23 -0.41 - 2.8 - - - 0.7 - - 1.14 -0.31 - - -0.49 -0.48 2.89
-1.28 - -2.56 -2.56 -2.12 -1.59 -4.05 -2.27 -0.27 0.78 -0.57 0.33 2.33 -0.08 0.62 -0.02 0.75 1.32 -1.71 -0.09 0.11 -1.44 -1.26 0.93 0.27 -0.28 -1.06 0.29 -1.1 -0.47 1.22
-1.12 -1.11 -0.39 -1.18 -1.13 -0.43 -1.49 -1.14 -0.84 -1.24 -0.46 -0.31 1.13 -0.24 0.02 -0.85 -0.48 2.89 0.28 -0.43 -0.41 -0.02 0.21 0.01 -0.12 -0.43 -0.17 -0.61 -0.44 -0.67 0.23
-2.1 -1.6 -2.93 -1.06 -1.37 -0.75 -1.33 -0.96 0.31 -0.95 -0.16 -0.22 1.6 0.2 0.32 -0.45 -0.1 2.54 0.12 -0.53 -0.39 0.07 0.21 0.21 -0.25 -0.59 -0.15 -0.83 -0.46 -0.51 0.26
-1.14 -0.57 -0.53 -1.38 -1.13 -0.83 -1.35 -1.49 -0.26 -0.55 -0.28 0.18 1.65 -0.61 0.25 -1.12 -0.12 1.93 0.71 0.07 0.33 0.56 -3.03 0.42 0.57 0.01 -0.22 0.34 -0.6 -0.85 -0.53
-0.86 -1.05 -1.13 -0.7 -0.64 -0.54 -1.18 -0.57 -0.21 -0.72 0.03 -0.07 1.87 0.41 0.39 -0.53 -0.09 1.19 0.16 -0.0 -0.26 0.21 0.01 0.21 -0.03 -0.14 -0.24 -0.08 -0.2 -0.35 0.25
- - - - - - - - 0.83 0.63 - - 3.74 0.97 - - - 2.59 -0.53 - -0.53 - 1.69 - - - -0.09 - - - -0.34
0.57 -0.59 -2.26 -0.22 - -2.04 0.07 -1.24 -0.05 -0.3 -0.53 -0.5 1.59 -3.4 -2.39 -0.73 0.26 3.48 -1.13 -0.56 -1.44 -3.44 - -1.33 0.01 -2.65 -0.55 -0.21 -0.76 -3.63 0.33
-0.44 -0.7 -0.4 -0.79 -1.18 -0.82 -0.96 -0.55 -0.1 -0.81 -0.42 0.14 1.59 -0.33 0.21 -0.61 -0.29 1.76 0.34 -0.17 0.04 0.19 -0.07 0.01 0.04 0.02 -0.21 0.01 -0.08 -0.42 0.07
- 0.68 - 0.6 - -0.64 0.97 -0.51 0.12 - - - 2.86 - 1.78 - - 2.38 - - -0.92 0.26 0.61 - - - -0.48 - - - 1.85
- - - - - - - - - 1.65 - - 3.75 - -0.38 - 1.93 - - - 0.21 - - - - - - 2.28 1.13 - 0.68
- - - - - - - - - - - - 3.8 - - - - 4.09 - - - - - - - - - - - - -
- - - - - 0.81 - 0.04 - - - - 3.12 - - 1.78 - 3.72 - -0.35 - 0.1 - - - - - - - 0.07 -
- - - - - - - - - - - - 3.0 - - - - 4.07 - - - - - - - - - - - - 2.65
- - - - - - - - - - - - 2.4 - - - - 4.37 - - - - - - - - - - - - 2.34
- - - -0.82 -0.54 -1.09 - -0.95 - - 0.18 - 2.48 -0.98 - -0.28 -2.34 3.33 - 0.05 -2.22 -1.22 -1.16 - 0.37 -0.0 - -1.07 - -2.22 2.42
-1.4 -0.67 -0.98 -0.85 -0.99 -0.77 -1.45 -0.8 -0.26 -1.48 -0.57 -0.1 1.83 0.1 0.35 -0.44 -0.24 2.43 0.46 -0.35 -0.13 0.37 -6.73 0.05 -0.31 0.0 0.18 -1.05 -0.38 -0.63 -0.01
- - - - - - - - - - - - 3.28 - - - - 4.41 - - - - - - - - - - - - -
- - - - - - - - - - - - 2.78 - -1.39 - -4.11 4.44 - -3.33 - -3.85 - -4.2 -4.22 - - -4.03 - -4.23 0.64
- - - - - - - - - - - - 2.78 - -1.39 - -4.11 4.44 - -3.33 - -3.85 - -4.2 -4.22 - - -4.03 - -4.23 0.64
- - - - -0.42 1.11 - - - - - - 3.58 - - - - 2.79 1.91 - -0.63 - - 0.41 - - -0.64 - - - 1.52
-0.97 -0.53 -0.36 -1.09 -1.18 -1.14 -1.15 -0.66 -0.46 -0.58 -0.25 0.14 1.14 -1.24 -0.1 -0.8 -0.23 2.35 0.34 -0.45 0.0 0.59 -0.79 0.36 0.07 0.1 0.04 -0.05 -0.25 -0.13 -0.18
-1.32 -0.76 -1.3 -1.71 -0.47 -0.11 0.48 -0.51 0.25 0.32 0.31 0.01 -0.07 -0.28 0.16 0.32 0.36 1.19 0.19 0.24 0.18 0.29 -2.58 -0.16 -0.29 0.19 0.14 0.43 0.06 0.1 -0.15
-1.72 -0.72 - - - -2.9 -0.76 -2.62 -0.55 -2.1 -0.46 -1.95 2.26 0.35 0.58 -0.38 -0.22 3.44 -0.41 -1.85 -1.84 -2.02 - -0.76 -0.3 - -1.72 0.62 -0.51 -4.0 0.72
-1.83 1.37 - -0.67 -0.65 1.03 -0.67 -0.31 -4.73 -3.0 -0.0 -2.83 3.42 -4.39 -2.05 -0.16 -1.4 0.89 -0.58 -1.22 0.25 -2.06 -3.07 -0.6 -0.8 -0.59 -0.16 -0.14 -0.83 -1.38 -0.61
-0.95 -1.0 -0.48 -0.64 -0.99 -0.72 -1.21 -1.11 0.03 -0.66 -0.47 0.18 1.84 0.21 0.73 -0.29 -0.16 1.09 0.65 0.16 0.11 0.23 -1.73 0.15 0.2 -0.21 -0.01 -0.52 -0.11 -0.45 0.21
-0.77 -1.41 -1.04 -1.78 -0.82 -0.96 -1.35 -0.36 -0.0 -0.83 -0.09 0.19 1.88 -1.22 0.09 -0.25 0.03 1.17 0.46 0.24 0.18 0.37 -2.25 0.18 -0.04 -0.2 -0.5 -0.05 0.21 0.21 0.95
- - - - - - - - - 0.26 - - 4.33 - - - - 2.68 - - - - - - - - - - - - 1.73
-0.6 -1.09 -0.19 -0.85 -1.92 -0.93 -1.08 -0.56 -0.04 -1.25 -0.32 -0.5 1.24 0.02 0.04 -0.83 -0.33 2.24 0.77 -0.15 -0.08 -0.53 -0.95 0.14 0.54 0.03 0.08 -0.09 -0.14 -0.05 -0.16
0.29 -1.21 -1.91 -0.54 -0.17 -0.9 -0.88 -0.59 -0.23 -0.38 0.23 0.07 1.45 0.12 0.52 -0.36 0.02 1.91 0.01 0.39 -0.23 -0.32 -3.62 0.01 0.13 0.16 0.12 1.09 -1.45 -1.99 -6.31
0.26 -1.14 -0.15 -2.07 -0.32 -0.7 -1.29 -0.59 -0.3 -0.07 -0.58 0.82 1.47 -0.07 1.04 -0.13 -0.23 1.6 0.15 0.3 -0.12 0.7 -2.12 -0.2 -0.13 0.02 0.16 -0.74 -1.64 -0.81 -1.26
- - - - - - - - - - - - 2.48 - - - - 4.42 - - - - 2.0 - - - - - - - -
- - - - - -0.07 - - - - - - 3.19 - - - -0.02 3.85 - - - - 1.67 - - - - - - -0.14 0.44
- - - - - - -0.38 - -0.92 - - 1.35 3.52 - - -0.59 - 3.61 - - - - 0.75 - - - - - - - 0.21
-1.03 -1.22 -0.39 -0.72 -1.15 -0.99 -0.9 -0.5 -0.19 -0.47 -0.36 0.1 1.57 -0.21 0.46 -0.35 -0.08 1.63 0.38 0.15 0.15 0.38 -0.58 -0.03 0.05 -0.19 0.11 -0.22 -0.12 -0.3 -0.04
- - - - - 3.0 - - - - - - 3.16 - - - - 3.81 - - - - - - - - - - - - -
Lsat_1_v5_gn_7_9121.1 (FMO GS-OX5)
- - - -0.32 -1.66 0.95 -1.69 - - - - -0.2 1.76 - -0.44 - - 3.92 1.63 -1.8 - - -0.63 -0.77 -1.7 - - -1.89 - -1.39 0.97
- - - - - - - - - - - - 3.18 - - - - 4.23 - - - - 1.65 - - - - - - - -
- - - - -0.89 -1.65 -2.22 - -1.71 - -1.42 - 2.67 - - -2.46 - 4.32 - - - - -0.32 - - - - - - - 0.92
- - - - - - - - - - - - 4.75 - - - - 2.03 - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - 4.17 - - - - - 3.7 - - - - - - -
- - - - - - - - - - - - 3.39 - - - - 4.36 - - - - - - - - - - - - -
- - - - - - - - - - - - 3.61 - - - - 4.23 - - - - - - - - - - - - -
-0.45 -0.86 -0.79 -0.32 -2.25 -3.13 -2.37 -2.94 -0.05 0.91 0.22 1.25 3.0 -0.92 -1.0 -0.54 0.26 0.56 -1.39 0.06 0.21 -1.29 -1.04 -1.11 -0.98 -1.38 -1.62 -1.39 -1.13 0.24 0.82
- - - - - - - - - - - - 4.95 - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - 3.56 - - - - 3.96 - - - - - - - - - - 1.9 - -
-0.85 -1.04 -0.63 -1.02 -1.34 -0.88 -1.57 -1.41 -0.58 -1.05 -0.38 -0.58 0.93 -0.08 0.04 -0.87 -0.7 2.91 0.39 -0.17 -0.25 -0.15 0.58 0.15 -0.32 -0.57 -0.49 -0.56 -0.0 -0.72 -0.01
-0.49 -0.23 0.55 -0.25 -1.81 -2.74 -1.0 -0.78 0.69 -0.94 -0.3 0.8 1.69 -5.45 -1.42 -1.46 -1.3 1.26 0.55 -0.11 0.2 0.47 -1.3 0.82 0.01 -0.23 -0.44 0.49 0.74 -0.62 -0.48

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.