Heatmap: Cluster_17 (Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	Light: 268 uE m-2 s-1	Light: 202.5 uE m-2 s-1 (Control)	Light: 135 uE m-2 s-1	Light: 67.5 uE m-2 s-1	Photoperiod: L24	Photoperiod: L20D4 (Control)	Photoperiod: L12D12	Photoperiod: L8D16	RBW: 4:1:1 (Control)	RBW: 4:1:0	RBW: 3:1:1	RBW: 3:1:0	Nitrogen: 0%	Nitrogen: 25%	Nitrogen: 50%	Nitrogen: 100% (Control)	Nitrogen: 150%	Phosphorous: 0%	Phosphorous: 25%	Phosphorous: 50%	Phosphorous: 100% (Control)	Phosphorous: 150%	Potassium: 0%	Potassium: 25%	Potassium: 50%	Potassium: 100% (Control)	Potassium: 150%	Temperature: 20°C	Temperature: 25°C (Control)	Temperature: 30°C	Temperature: 35°C
Lsat_1_v5_gn_1_116080.1 (PRS)	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_1_123321.1 (NLP2)	-	-	-	-	-	-	-	-	2.89	-	4.56	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_1_45160.1 (NOT3)	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_1_60800.1	-	-	-	-	-	2.23	0.43	-	-	-	2.96	-	0.47	0.73	-	-	-	2.55	-	-	-	-	3.05	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_1_63240.1	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_1_98181.1 (AtSEC23G)	-	-	-	-	-	-	-	-	2.83	-	4.03	-	-	-	-	-	-	2.93	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_2_2520.1	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_2_52740.1	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_2_53140.1 (CSI1)	-	-	-	-	-	-	-	1.82	-	-	4.23	-	-	-	-	-	-	-	-	3.11	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_2_75080.1 (GGL5)	-	-	-	-	-	-	-	-	-	-	2.83	1.38	1.3	-	-	-	-	2.72	-	-	-	-	3.61	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_2_90421.1 (RAF36)	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_2_97320.1	-	-	-	-	-	-	-	-	2.13	-	2.99	0.65	-	1.02	-	-	-	2.55	-	-	-	-	-	-	0.66	-	-	-	-	-	2.93
Lsat_1_v5_gn_3_131641.1 (STI)	-	-	-	-	-	-	-	-	-	-	3.44	-	-	-	-	-	-	-	-	-	-	-	-	3.28	-	-	-	-	-	-	3.38
Lsat_1_v5_gn_3_17540.1	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_3_18781.1	-	-	-	-	-	-	-	-	-	-	4.35	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.4
Lsat_1_v5_gn_3_2320.1 (YKT61)	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_3_27700.1 (AO1)	-	-	-	-	-	-	-	-	-	-	4.0	-	-	-	-	-	-	3.9	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_3_45960.1 (PSBB)	-	-	-	-	1.77	-	-	-	1.58	1.73	3.19	-	-	-	-	-	-	-	-	1.51	1.56	1.69	-	-	-	1.65	-	-	-	-	-
Lsat_1_v5_gn_3_48581.1 (DRL1)	-	-	-	-	-	-	-	2.64	-	-	2.89	-	-	2.02	-	-	2.07	-	-	-	-	-	-	-	-	-	2.01	-	-	-	2.34
Lsat_1_v5_gn_3_97021.1 (AP1)	-	-	-	-	1.02	-1.31	-1.08	-	-	-0.2	2.42	-1.32	-	-1.01	1.62	1.21	-	-	1.66	-0.39	-	1.44	-0.17	-	-1.25	-1.5	1.24	-0.12	0.76	-0.27	0.54
Lsat_1_v5_gn_4_143721.1 (GSO1)	-	-	-	-	-	-	-	-	-	-	3.27	-	-	-	-	-	-	3.57	-	-	-	-	3.24	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_23301.1	-	-	-	-	-	-	-	-	-0.25	-	3.11	-	-	-	-	-	-	1.23	3.08	-	2.82	-	-	-	-	-	-	-	-0.09	-	1.45
Lsat_1_v5_gn_5_103860.1 (PEN3)	-	-	-	-	-	-	-	-	-	-	4.04	1.7	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.5	-	-	-	-
Lsat_1_v5_gn_5_120041.1 (ZOU)	-	2.0	-	-	-	-	0.29	-	-	-	2.72	-	2.77	-	-	-	-	2.8	-	-	2.44	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_5_146940.1 (KAN)	-	-	-	-	-	-	-	-	-	-	3.34	-	-	-	-	-	-	-	-	-	1.75	-	3.67	-	-	-	-	-	-	2.24	-
Lsat_1_v5_gn_5_165201.1 (PGP1)	-	-	-	-	-	-	-	-	-	-	4.18	-	-	-	-	-	-	-	-	-	-	-	3.69	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_5_19440.1 (TCP15)	1.92	-	-	-	-	-	-1.23	-	-	-1.86	3.18	-	-	-	1.17	1.69	-	-	-	-	-	-	-	1.17	0.41	-	0.02	1.2	0.73	-0.08	1.29
Lsat_1_v5_gn_5_22620.1 (TCP5)	-1.12	-	-	-	0.53	-0.19	0.61	-0.74	-0.12	-0.99	1.44	-0.87	1.01	0.06	-0.36	1.79	0.03	-0.1	0.21	-0.36	-2.58	-0.79	-	0.01	-0.02	0.6	-1.12	-0.99	-1.46	0.04	1.85
Lsat_1_v5_gn_5_55381.1	-	0.92	-	-	0.38	1.49	-	-	-0.63	-	1.83	-	-	2.54	1.66	0.78	-	-	1.42	-	0.26	-	-	-	1.01	1.18	-0.71	0.42	-	-	-
Lsat_1_v5_gn_6_51920.1 (ATBCAT-5)	-	-	-	0.81	-	0.09	-	-	-	-	2.02	-	-	1.73	-	-	0.19	0.54	2.37	-	2.19	-	-	-	-	-	-	-	-	2.45	1.58
Lsat_1_v5_gn_6_9960.1 (ARIA)	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_7_25041.1	-	-	-	-	-0.25	-	-	-0.33	-0.34	0.75	2.2	-	2.43	1.65	-	2.25	-0.12	0.72	-0.39	1.3	1.69	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_7_6821.1 (CHR4)	-	-	2.43	-	-	2.7	-	-	-	-	3.66	-	-	-	-	-	-	-	-	1.13	1.05	-	-	-	-	-	-	-	-	1.16	-
Lsat_1_v5_gn_7_85700.1	-	-	-	-	-0.17	0.45	1.17	-	0.08	-0.16	2.5	0.35	-0.08	0.67	-0.97	-	1.65	-	0.26	-	0.26	-0.82	-	-	-	1.21	1.9	-0.2	-0.02	-0.86	-
Lsat_1_v5_gn_8_126020.1	-	-1.09	-	-	1.34	-	-	-	-	-1.2	1.42	-1.42	0.69	1.16	-0.29	0.47	1.35	1.96	-1.63	0.99	-1.64	-	-	-1.49	0.19	-	-	0.99	0.09	-1.18	2.15
Lsat_1_v5_gn_8_159221.1	-	-	-	-	2.04	-	-	-	-	-	3.99	-	-	-	-	-	-	3.46	-	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_8_37420.1 (BRC2)	-2.39	-2.42	-1.87	-1.84	-0.01	-1.17	0.35	-0.55	0.51	0.56	0.82	0.24	1.56	0.54	0.92	0.52	-0.55	-0.67	0.26	0.34	0.05	-0.64	-0.04	-0.69	-1.84	-0.48	-1.1	-1.31	0.73	0.17	0.49
Lsat_1_v5_gn_8_76200.1 (PMIR1)	-	-	-	-	-	-	-	-	-	-	4.61	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2.71
Lsat_1_v5_gn_8_8121.1 (MDKIN1)	-	-	-	-	-0.1	-	-	-	-	2.58	2.8	2.07	-	-	-	2.71	-	-	-0.09	0.85	-	-	-	-	-0.13	-0.03	0.77	-	-	-	-
Lsat_1_v5_gn_8_86660.1 (BTI3)	-	-0.06	-1.08	-1.07	-	-0.79	0.3	-0.58	-	-1.24	1.77	-	-2.24	-2.16	-1.14	-0.16	-1.14	2.39	2.17	0.97	-0.98	-0.8	-0.64	0.16	-0.38	0.2	-0.56	-	-2.34	0.16	1.06
Lsat_1_v5_gn_8_91341.1	-	-	-	-	-	-	-	-	-	-	4.55	-	-	1.12	-	-	0.87	-	1.87	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_9_105041.1	2.18	-	-	-	-0.39	1.44	-	-	-	-	3.0	-	-	1.5	-	0.33	0.17	-	1.23	-	-	1.37	1.86	0.27	-	-	-	-	-	-	-
Lsat_1_v5_gn_9_112440.1	-	-	-	-	-	-	-	-	0.97	-	3.61	-	2.03	-	-	3.18	-	0.9	-	-	-	-	-	-	-	0.83	-	-	-	-	-
Lsat_1_v5_gn_9_51881.1 (QWRF4)	-	-	-	-	-	-	-	-	-	-	3.78	-	-	-	-	-	-	-	-	-	-	-	4.11	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_9_6120.1 (STN1)	-0.21	-0.45	-0.43	-1.1	-0.06	0.19	-0.43	0.11	-0.12	-0.89	0.54	-0.3	-0.15	0.15	0.8	0.26	-0.1	0.0	0.72	-0.09	-0.44	0.05	-0.31	-0.09	-0.12	-0.19	-0.0	-0.37	0.39	0.14	0.66
Lsat_1_v5_gn_9_62960.1 (RRL)	-	-	-	-	2.02	-	-	-	-	-	4.5	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2.1
Lsat_1_v5_gn_9_77021.1 (TEAR2)	-	-	-	-	-0.28	-0.29	-1.15	-1.1	0.19	-1.07	1.91	-	-1.2	0.61	2.35	-1.14	-1.1	0.63	0.07	0.51	0.16	-	2.0	-	-	1.38	-1.48	-	-1.18	-1.34	1.12
Lsat_1_v5_gn_9_8381.1 (TCTP1)	-	-	-	-	-	-	-	-	4.03	-	3.87	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.