Heatmap: Cluster_192 (Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	Light: 268 uE m-2 s-1	Light: 202.5 uE m-2 s-1 (Control)	Light: 135 uE m-2 s-1	Light: 67.5 uE m-2 s-1	Photoperiod: L24	Photoperiod: L20D4 (Control)	Photoperiod: L12D12	Photoperiod: L8D16	RBW: 4:1:1 (Control)	RBW: 4:1:0	RBW: 3:1:1	RBW: 3:1:0	Nitrogen: 0%	Nitrogen: 25%	Nitrogen: 50%	Nitrogen: 100% (Control)	Nitrogen: 150%	Phosphorous: 0%	Phosphorous: 25%	Phosphorous: 50%	Phosphorous: 100% (Control)	Phosphorous: 150%	Potassium: 0%	Potassium: 25%	Potassium: 50%	Potassium: 100% (Control)	Potassium: 150%	Temperature: 20°C	Temperature: 25°C (Control)	Temperature: 30°C	Temperature: 35°C
Lsat_1_v5_gn_0_29701.1	-	-	-	-	-	-	-	3.48	-	-	-	-	3.34	-	-	-	-	-	-	-	-	-	-	3.28	-	-	-	-	-	-	-
Lsat_1_v5_gn_1_104761.1	-	-	0.01	-	0.72	0.71	-0.08	-	0.43	0.23	2.08	-0.37	0.33	1.55	0.44	-0.15	-1.47	1.52	0.08	-	0.54	-	-	-0.31	-	0.86	1.18	-0.39	-	-	-1.33
Lsat_1_v5_gn_1_108720.1 (EMB3141)	-	-	-	-	-	-	-	-	-	-	2.95	-	3.39	-	-	-	-	-	-	-	-	-	-	3.33	-	-	-	-	1.45	-	-
Lsat_1_v5_gn_1_116060.1 (ALIS1)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-
Lsat_1_v5_gn_1_92020.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-
Lsat_1_v5_gn_2_102541.1	-	-	-	-	0.04	1.84	-	-	-	-	-	-	2.37	-	0.46	0.71	-	-	-	1.1	-	-	1.39	2.27	-	-	-	-	1.94	-	2.25
Lsat_1_v5_gn_2_127540.1 (CDC20.5)	-	-	-	0.36	-	-	-	1.83	-	-	-	-	0.05	-	-	-	1.04	-	-	-	0.97	-	2.9	2.02	-	-	0.25	-	2.04	2.12	-
Lsat_1_v5_gn_2_32620.1	-	-	-	-	-	-	-	-	1.06	-	-	-	-	-	-	-	-	1.11	0.55	-	0.97	-	1.78	2.73	-	-	1.92	3.24	-	-	-
Lsat_1_v5_gn_2_65581.1	-	-	-	-	0.47	-	-	-	0.54	-	-	-	-	-	-	-	0.91	0.65	-	1.59	-	-	2.94	2.3	-	-	0.95	-	2.84	-	-
Lsat_1_v5_gn_3_122081.1	-	0.05	-	0.53	-1.6	-	-1.35	0.82	-0.34	-	0.41	-1.1	-	0.01	-	-1.11	-0.13	0.11	0.67	-0.4	0.13	-0.07	0.7	1.84	1.85	-1.58	-1.06	-1.29	0.68	1.24	0.68
Lsat_1_v5_gn_3_22581.1	-	-	-	-	-	-	-	-0.12	-1.12	-1.37	-1.1	-1.3	1.24	0.89	-1.08	0.65	-1.24	1.4	-0.94	-1.46	1.71	0.36	1.63	1.81	1.4	-0.47	-	-1.58	-1.42	0.52	0.59
Lsat_1_v5_gn_3_29920.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-
Lsat_1_v5_gn_3_92020.1 (FVE)	-	1.42	-	-	-	-	2.54	-	1.82	-	-	-	-	-	1.19	0.03	-	-	-	-	-	0.29	1.99	2.19	2.56	-	-	-	-	-	-
Lsat_1_v5_gn_4_142780.1 (TN6)	-	1.79	-	-	-	-	1.97	-	0.01	-0.17	-	-0.3	-	0.02	2.04	1.01	-0.12	2.04	-0.35	-	-	-	-	2.44	-	-0.44	-	-0.11	-	-0.19	-
Lsat_1_v5_gn_4_152261.1	-	-	-	-	0.24	-	-	-	-	-	-	0.57	-	-	-	1.71	-	-	-	-	0.57	-	-	3.44	-	2.61	-	-	1.77	-	1.67
Lsat_1_v5_gn_4_172581.1	-	-	-	-	-	-	0.98	-	0.71	1.38	0.07	1.4	-	-	-	1.81	-	1.14	-	0.71	-	-	-	3.06	-0.28	1.08	-	-	-	1.3	-
Lsat_1_v5_gn_4_20061.1 (BCHA2)	-	-	1.19	-	0.67	-0.45	-1.47	1.91	-	-	-	1.76	0.7	-	-	-	0.15	-	-1.1	1.18	-	-	0.66	1.96	0.77	-0.76	1.22	-0.4	0.63	-0.56	-1.49
Lsat_1_v5_gn_4_3121.1 (UGT73B1)	-	-	-	-	-	-	-	-	-	2.72	-	-	2.55	-	-	-	-	-	-	-	-	-	-	3.08	-	3.34	-	-	-	-	-
Lsat_1_v5_gn_4_90461.1	-	-	-	-	-	-	-	-	-	-	-	-	1.73	-	-	-	-	2.51	1.32	0.47	-0.98	-	-0.92	2.53	2.25	-	-	-	1.45	-1.02	1.73
Lsat_1_v5_gn_4_92341.1 (PME1)	0.67	-	-	-	0.52	0.64	1.52	-	0.5	0.33	0.47	0.32	-1.08	-	0.81	0.79	-1.34	1.24	-	-0.75	-0.8	-	-1.7	2.05	-0.2	-1.33	1.38	0.45	-1.24	-1.92	-
Lsat_1_v5_gn_4_96620.1 (PAB6)	1.74	0.74	-	-	1.67	-	-	0.53	-	-	-	-	2.35	-	-	-	-	1.25	-	-	-	-	2.03	1.91	-	-	0.48	0.1	-	1.23	0.3
Lsat_1_v5_gn_5_123220.1	-	-	-	1.0	-	-	-0.33	-0.11	-	-	-	0.84	-0.24	-	-	-	-0.31	-	-	-	1.49	-	-	3.49	-	2.32	-	-0.23	-0.32	-	1.64
Lsat_1_v5_gn_5_135480.1 (INP1)	-	-	-	-	0.86	2.29	-	-	-	-	-	-	-0.57	-	-	-	-	-	-	-	-0.67	0.38	1.96	3.73	-	-	-	-	-	0.35	1.69
Lsat_1_v5_gn_5_45140.1 (ATR)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.42	4.34	-	-	-	-	-	-	-
Lsat_1_v5_gn_5_55000.1 (KA120)	-2.83	-0.49	-0.3	-0.31	0.71	0.01	-3.22	0.54	-0.38	0.14	0.8	-1.35	-0.48	-0.07	-0.46	-0.26	-0.18	-0.31	0.9	-1.49	-0.28	-1.32	0.01	1.19	0.78	0.59	-0.13	-0.52	0.71	-1.11	0.8
Lsat_1_v5_gn_5_59500.1 (ATCS)	-	-	0.39	-	-	-	-	-	-	-	-	-0.23	3.18	-	-	-	0.73	0.11	-	-	0.16	0.17	-	2.16	-	1.21	1.6	2.33	-	-	-
Lsat_1_v5_gn_5_92240.1 (NSUN5)	-	-	1.65	-	-	-	-	-	3.26	-	-	-	-	-	-	1.25	-	-	-	-	-	2.72	-	2.73	-	-	-	1.42	-	-	-
Lsat_1_v5_gn_6_46940.1	-	-	-	-	0.23	1.3	-	-	-	0.35	-	0.16	-	1.48	1.61	-	0.52	2.0	-	-	-	0.38	-	1.81	1.81	2.11	0.07	-	-	-	-
Lsat_1_v5_gn_6_80301.1 (MON1)	-	-	-	-	0.82	0.78	1.79	2.6	2.55	-	-	0.98	-	-	-	-	-	-	-	-	0.63	-	-	3.11	-	-	-	-	-	-	-
Lsat_1_v5_gn_7_107980.1 (PERK5)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.15	2.0	-	-	-	3.77	-	-	-	-	-	-	2.16
Lsat_1_v5_gn_7_48561.1 (SNAP29)	-1.2	-	-3.36	0.07	-	-	-1.69	-0.07	0.84	1.8	1.0	0.21	1.21	-2.63	0.23	-1.89	0.63	-0.16	-	0.04	-1.19	-0.96	-	1.64	1.71	-1.36	-0.82	-0.32	-1.24	-0.2	0.96
Lsat_1_v5_gn_7_58040.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.74	-	-	-	-	-	-	-	-	4.18	-	-	1.76	-	2.62	-	-
Lsat_1_v5_gn_7_60281.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-
Lsat_1_v5_gn_7_96380.1 (RPT6A)	-	-	0.41	-	0.11	-0.95	-	2.54	0.74	-	-	0.74	-	-	-	0.43	-	-	1.2	1.61	0.83	-	0.84	2.1	-	-	-	-	0.2	0.06	1.1
Lsat_1_v5_gn_8_114681.1 (LEC1)	-0.63	0.22	-	1.58	-0.7	0.14	-0.15	0.44	-1.21	-	-	-	-	1.28	0.33	0.83	-0.36	-	-	2.12	-	-	0.45	1.77	-	0.3	-	-1.16	-0.26	1.07	0.88
Lsat_1_v5_gn_8_148940.1 (BTZ1)	-	-	-	-	-	-	3.59	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.24	-	-	-	-	-	-	-
Lsat_1_v5_gn_8_64341.1 (LOS2)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-
Lsat_1_v5_gn_8_71061.1 (IAA2)	-	-	-	-	-	-	-	-	-	-	-	3.34	-	-	-	-	-	-	-	-	3.38	-	-	3.39	-	-	-	-	-	-	-
Lsat_1_v5_gn_8_96120.1 (GOXL2)	-	-	-	-	-	-	-	-	-	-	-	-	3.39	-	-	-	-	-	-	-	-	-	-	4.36	-	-	-	-	-	-	-
Lsat_1_v5_gn_8_99681.1	1.45	-	-	-	-	-	-	-	-	0.01	-	-	1.7	0.28	-	-	-	2.16	-	-	-	1.82	1.8	2.4	-	-	0.91	-	-	-0.01	1.65
Lsat_1_v5_gn_9_14541.1 (CRC)	-	0.86	-	1.77	-0.54	-0.58	0.43	-	0.37	-	-	-	1.81	-0.35	0.66	-	-0.5	2.88	0.83	-	-0.76	-	-	2.03	-	-0.53	-	-	-	-	-0.57
Lsat_1_v5_gn_9_37180.1 (TBL34)	-	-	-	-	-	-	-	-	-	-	-	-	-	3.51	-	-	-	-	-	-	-	-	-	4.29	-	-	-	-	-	-	-
Lsat_1_v5_gn_9_38321.1	-20.51	-	-	-	-	-	-	-7.96	-	-	-	-	-	-	-	-	2.55	-	-	-	-	-2.82	-	3.88	-	2.71	-	1.89	-	-	-

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.