Heatmap: Cluster_46 (Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	Light: 268 uE m-2 s-1	Light: 202.5 uE m-2 s-1 (Control)	Light: 135 uE m-2 s-1	Light: 67.5 uE m-2 s-1	Photoperiod: L24	Photoperiod: L20D4 (Control)	Photoperiod: L12D12	Photoperiod: L8D16	RBW: 4:1:1 (Control)	RBW: 4:1:0	RBW: 3:1:1	RBW: 3:1:0	Nitrogen: 0%	Nitrogen: 25%	Nitrogen: 50%	Nitrogen: 100% (Control)	Nitrogen: 150%	Phosphorous: 0%	Phosphorous: 25%	Phosphorous: 50%	Phosphorous: 100% (Control)	Phosphorous: 150%	Potassium: 0%	Potassium: 25%	Potassium: 50%	Potassium: 100% (Control)	Potassium: 150%	Temperature: 20°C	Temperature: 25°C (Control)	Temperature: 30°C	Temperature: 35°C
Lsat_1_v5_gn_0_2101.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.34	4.38	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_0_39101.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_1_117060.1 (NFP7.1)	1.96	1.74	-0.69	1.85	-0.37	-	-0.94	-	0.72	0.07	-	0.05	-0.91	-	1.39	-	-	-	2.73	-	-	-	-0.71	-	-	-0.95	0.38	-	1.19	-	-
Lsat_1_v5_gn_1_33040.1 (AGL4)	-	-	-	-	2.42	-	-	-	-	-	-	-	2.55	-	-	-	-	2.15	2.77	-	-	-	1.52	-	1.35	-	-	-	-	1.65	-
Lsat_1_v5_gn_1_39241.1 (OZS2)	-	-	-	-	-	-	2.45	2.51	-	1.39	-	-	1.7	-	-	-	-	-	3.8	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_1_39860.1	-	-	-	-	-	-	-	-	-	-	-	-	-	1.41	1.42	-	-	-	4.26	-	-	-	-	-	-	-	-	-	-	-	2.71
Lsat_1_v5_gn_1_54801.1 (7TM1)	1.55	-	-	-	1.06	-	1.18	-	0.92	-	1.13	1.03	1.05	-	-	-	-	-	2.97	-	-	-	-	0.96	-	-	-	-	-	2.53	-
Lsat_1_v5_gn_1_59840.1 (ARL8b)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.15	-	-	-	2.8	-	-	-	-	-	-	-	2.65
Lsat_1_v5_gn_1_82800.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.48	-	-	-	-	-	-	-	-	-	3.12	-	-
Lsat_1_v5_gn_1_85021.1	-	-	-	-	-	-	1.16	1.97	-	-	-	-	-	1.17	2.59	-	-	-	3.22	-	0.58	-	0.81	0.71	-	-	-	-	-	-	1.26
Lsat_1_v5_gn_2_103541.1 (METS1)	-1.53	-1.81	-0.62	-0.45	-2.42	-1.17	-1.13	-0.83	0.42	-0.25	-0.73	-0.96	0.95	-2.3	0.06	1.18	-0.84	-0.54	1.6	0.5	0.43	-0.37	0.97	1.19	0.33	0.07	-0.22	-0.59	-1.56	-0.18	0.58
Lsat_1_v5_gn_2_123241.1	-	-	-	-	-	-	-	1.06	-	-	1.64	-	-	-	-	-	0.02	0.08	3.55	-	0.06	2.25	-	-	-	0.12	-0.07	-	-	1.44	0.54
Lsat_1_v5_gn_2_25981.1	-	-	-	-	-	-1.54	-0.35	0.41	0.03	-	-1.45	-	0.55	1.03	2.59	-0.26	-	-	2.51	-0.09	-	-	-1.46	-	-	-0.05	-	0.17	1.7	1.46	0.76
Lsat_1_v5_gn_2_46640.1 (AFB5)	-	-	-	1.59	-0.52	-	-	-	1.25	-	-	-	-	0.0	-	-0.01	2.65	0.72	2.77	-0.28	-	-	1.84	-	-0.28	-	-	-	-	1.07	-0.23
Lsat_1_v5_gn_2_83760.1 (HK5)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_3_103061.1 (SRG1)	0.03	-1.39	-2.39	-1.47	0.16	1.01	0.37	0.63	-0.71	-0.04	0.28	-2.56	-0.07	1.39	1.28	-0.56	-0.22	1.36	1.6	-0.98	0.17	0.33	-1.73	-0.55	-	-1.34	-1.8	-2.76	-0.77	-0.07	-0.5
Lsat_1_v5_gn_3_1880.1 (At12Cys-1)	-	-	-	-	-	-	3.34	-	-	-	-	-	-	-	-	-	-	-	3.61	-	-	-	-	3.11	-	-	-	-	-	-	-
Lsat_1_v5_gn_3_5840.1	-	-	2.08	-	2.45	-	-	-	-	-	-	-	-	-	-	-	-	-	3.67	2.53	-	-	-	-	-	-	-	1.48	-	-	-
Lsat_1_v5_gn_3_60001.1 (PFT1)	-	-	-	2.4	-	-	-	-	-	-	-	-	-	-	-	-	2.3	-	4.05	-	-	-	-	-	-	-	-	-	-	-	2.07
Lsat_1_v5_gn_3_66300.1	-	0.7	-	1.2	1.32	-	-	-	-	1.84	-	-0.7	-0.45	-	2.04	1.03	-	-	1.98	-	-	1.07	1.66	-	-0.79	-0.69	0.33	0.32	-	-0.76	-
Lsat_1_v5_gn_3_86380.1 (CTPS4)	-	2.19	-	-	0.83	-0.11	-	-	1.0	2.05	-	-0.31	1.11	-	0.04	0.29	0.04	-	3.01	-	-	-	-	-	-	-	0.64	-0.15	-	-0.22	-
Lsat_1_v5_gn_3_97661.1 (BRT1)	-	-	-	-	1.35	-	0.83	1.8	0.75	0.79	-	-	-	1.69	-0.15	-	2.53	-	1.91	0.63	-	-0.33	-	0.65	-0.36	0.51	-	-	-	-	-
Lsat_1_v5_gn_4_111100.1 (COQ6)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.42	3.26	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_112160.1 (UPM1)	-	-	1.06	-	-0.83	-0.9	-	-	-	-	-	-	-0.82	2.19	0.32	-0.4	-	2.01	2.46	0.06	-	-0.89	2.04	0.73	-	-	-	0.25	-0.92	0.4	-0.37
Lsat_1_v5_gn_4_145861.1 (ERD7)	-	-	-	-	0.13	-	-	-	1.57	-	-	0.76	2.15	-	-	1.37	-	0.73	2.17	1.86	-	0.17	-	1.22	-	-0.76	-0.55	-	0.34	-0.53	0.78
Lsat_1_v5_gn_4_179721.1	-	-	-	-	-	-	-	-	-	1.34	-	-	-	-	-	-	-	-	3.33	-	-	-	1.39	-	-	-	-	-	3.09	-	2.86
Lsat_1_v5_gn_4_47181.1	-	-	-	-	-	-	-	-	-	-	-	-	3.85	-	-	-	2.27	-	3.55	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_53341.1	-	-	-	-	-	-	-	-	0.23	0.24	-	-	-	2.65	1.45	-	-	2.24	2.27	-	-	1.87	1.44	0.3	-	-	-	-	0.43	0.22	-
Lsat_1_v5_gn_4_72880.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_4_95261.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_5_119240.1	-	-	-	-	-	-	-	1.11	-	-	-	-	1.2	2.1	-	-	-	-	3.28	-	-	1.2	-	-	-	0.76	-	-	-	1.17	2.65
Lsat_1_v5_gn_5_153241.1 (cPT4)	-2.08	-	-	-0.68	-0.4	-1.01	-0.33	-0.37	0.0	-2.66	-1.49	1.56	1.39	-0.82	-0.07	-0.55	0.47	-1.18	1.33	0.93	-0.11	0.06	-	1.19	1.18	-1.07	-0.12	-0.04	-0.32	0.26	-0.17
Lsat_1_v5_gn_5_23900.1 (CTS)	-	-	-	-	-	-	-	-	1.33	-	1.62	-	-	2.82	-	-	2.46	-	3.39	1.27	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_5_36721.1 (CDKB1;2)	-	-	-	-	-	-	-	1.62	-	-	0.87	-	0.5	-	-	-	-	-1.41	4.04	-	-	-	-	-	-	-	0.65	-	-1.24	-	2.54
Lsat_1_v5_gn_5_38861.1	0.19	-1.47	-0.88	-0.92	0.32	-1.38	-	0.35	0.72	-	-1.58	-0.53	0.26	0.79	0.66	-2.47	-2.77	1.74	1.71	-2.68	-	-0.19	0.81	-	0.61	0.68	-	-1.74	0.76	1.46	-0.43
Lsat_1_v5_gn_5_53440.1 (SPK1)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_5_78081.1	-	-	-	-	1.02	1.26	-	-	-	-	1.31	-	-	-	3.01	-	-	-	3.23	-	-	-	-	2.73	-	-	-	-	-	-	-
Lsat_1_v5_gn_6_113401.1	-	-	-	-	0.19	-	-	0.64	0.29	-0.6	-	-	0.61	1.71	0.63	-	-	2.52	2.48	-0.76	0.97	1.3	-	-	-	-	-0.41	-0.79	-	-0.32	0.68
Lsat_1_v5_gn_6_40221.1 (BMY7)	-	-	0.17	-	0.74	-0.37	-	-	-1.78	-	-0.49	-0.87	-	-0.46	1.19	1.04	-	1.49	2.25	1.92	-0.0	-0.33	1.72	-0.59	-	0.55	-0.69	-1.83	-	-0.58	-0.57
Lsat_1_v5_gn_6_43381.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_6_47440.1	-1.22	2.7	-0.44	-1.88	-	-	0.36	-14.16	-	-2.35	-	0.92	2.08	0.64	-	-	-1.08	-	2.98	-	1.01	-	-	-4.56	-3.32	-2.25	-	-2.32	0.7	-	0.38
Lsat_1_v5_gn_6_80681.1 (XIW1)	-1.11	-	-1.17	-1.17	1.01	-0.12	0.79	-2.26	0.35	1.18	-0.04	-2.47	1.07	0.1	-2.34	0.79	-0.63	0.03	0.96	-2.67	-0.08	1.49	-2.35	-	-0.98	-0.24	0.71	-1.38	-1.55	-0.97	1.6
Lsat_1_v5_gn_7_10881.1 (bZIP18)	-	-	-	-	0.79	-	-	-	-	-	-	-	-	1.25	-	-	-	2.68	3.22	-	-	-	-	-	-	-	-	-	1.15	1.1	2.76
Lsat_1_v5_gn_7_70781.1 (BRAT1)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.78	-	-	-	-	-	-	-	-	-	-	-	1.81
Lsat_1_v5_gn_8_101120.1 (LecRK-I.10)	-0.0	-	0.94	0.44	-0.16	-0.81	-1.44	-1.66	-0.77	-2.73	-0.27	-0.94	0.85	1.67	-1.34	-	-0.97	1.49	1.47	-	0.79	-1.43	-1.97	-0.88	0.15	-0.99	-2.54	-	-0.07	1.18	1.64
Lsat_1_v5_gn_8_110321.1 (PIRL3)	-	-	-	1.85	-	-	-	-	1.79	-	-	-	-	-	-	-	-	-	2.94	-	1.85	-	1.59	1.55	-	-	-	-	2.23	-	1.02
Lsat_1_v5_gn_8_159040.1	-	-	-	1.17	-	-	-	0.9	1.38	0.08	0.94	-	1.48	0.25	1.09	-	-	2.12	2.24	-	-	-	-	0.85	-0.18	-	-	-	-	1.12	0.34
Lsat_1_v5_gn_8_17280.1 (MTP11)	-0.75	-2.4	-0.12	0.25	0.84	-1.47	0.05	-0.99	0.33	-3.89	-1.41	0.14	-0.23	-0.83	0.62	0.45	-0.24	1.35	1.06	-0.46	-0.24	0.13	0.43	0.44	-0.42	-0.53	-0.94	-0.51	0.19	-0.6	0.97
Lsat_1_v5_gn_8_47381.1 (SNAP30)	-	-	-	-	-0.73	0.81	-0.76	-0.87	-0.96	-	1.91	1.6	1.07	-0.59	-	0.46	0.24	1.02	1.59	0.06	-0.95	-	-	1.1	-0.83	0.07	-	-	0.74	0.18	0.79
Lsat_1_v5_gn_8_55200.1 (Cand3)	-	-	-	-	0.43	-	1.82	-	0.45	-	-	-	-	1.71	-	-	0.41	-	4.33	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_9_102201.1 (SNAP29)	-4.38	-4.46	-5.48	-5.46	-	-5.86	2.96	-	-	-	-	-	-	-	-	-	-	-5.1	4.52	-	-	-	-4.38	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_9_112081.1	-	-	-	-	-	-	-	-	-	-	2.96	-	-	-	-	-	-	-	3.67	-	-	-	-	-	-	-	-	-	1.8	1.78	1.85
Lsat_1_v5_gn_9_125000.1 (USP)	0.87	-	-0.28	-	-0.24	-0.59	-	-	0.78	0.37	-1.36	-	-	1.91	-0.1	-0.97	-	1.72	2.27	-1.56	0.09	1.09	-	-	-1.42	-	1.23	-1.45	-1.51	-	1.66
Lsat_1_v5_gn_9_39040.1 (TRM8)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-	-	-	-	-	-	-	-
Lsat_1_v5_gn_9_91201.1 (HRQ1)	-	-	-	-	0.94	-	-	2.48	-	-	0.43	-	-	1.76	-	-	-	2.05	2.93	1.46	1.44	-	-	-	-	-	0.62	-	-	-	-
Lsat_1_v5_gn_9_91740.1	-	-	-	-	0.88	1.04	-	0.28	-0.13	1.7	-	-	0.37	-	-	-	-	-	2.68	-	-	-	-	-	-	-0.27	0.34	-	1.26	2.7	1.61
Lsat_1_v5_gn_9_93941.1	-	-0.62	-	-	-0.11	0.37	-1.94	-0.57	-0.01	-	-1.65	0.35	-1.34	1.13	2.24	-1.27	0.28	-	1.79	-	1.38	-	-	1.38	-1.72	1.48	-0.29	-	0.81	-0.41	-0.74

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.