Coexpression cluster: Cluster_388 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:1901271 lipooligosaccharide biosynthetic process 16.67% (1/6) 11.15 0.00044 0.0066
GO:1901269 lipooligosaccharide metabolic process 16.67% (1/6) 11.15 0.00044 0.0066
GO:0009245 lipid A biosynthetic process 16.67% (1/6) 11.15 0.00044 0.0066
GO:0046493 lipid A metabolic process 16.67% (1/6) 11.15 0.00044 0.0066
GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity 16.67% (1/6) 12.73 0.000147 0.006601
GO:0019213 deacetylase activity 16.67% (1/6) 12.73 0.000147 0.006601
GO:0044237 cellular metabolic process 66.67% (4/6) 2.87 0.000883 0.009934
GO:0006950 response to stress 33.33% (2/6) 5.45 0.000858 0.01103
GO:0008152 metabolic process 66.67% (4/6) 2.28 0.004251 0.01739
GO:0090304 nucleic acid metabolic process 33.33% (2/6) 4.34 0.003869 0.017411
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 16.67% (1/6) 7.93 0.0041 0.017573
GO:0008150 biological_process 83.33% (5/6) 1.79 0.003838 0.018178
GO:0046467 membrane lipid biosynthetic process 16.67% (1/6) 8.15 0.003515 0.018611
GO:0006664 glycolipid metabolic process 16.67% (1/6) 8.15 0.003515 0.018611
GO:1903509 liposaccharide metabolic process 16.67% (1/6) 8.15 0.003515 0.018611
GO:0009247 glycolipid biosynthetic process 16.67% (1/6) 8.15 0.003515 0.018611
GO:0006643 membrane lipid metabolic process 16.67% (1/6) 8.03 0.003808 0.01904
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides 16.67% (1/6) 9.03 0.001905 0.019055
GO:0006284 base-excision repair 16.67% (1/6) 8.49 0.002784 0.020879
GO:0006139 nucleobase-containing compound metabolic process 33.33% (2/6) 4.07 0.005599 0.020996
GO:0009987 cellular process 66.67% (4/6) 2.18 0.005467 0.021394
GO:0071704 organic substance metabolic process 66.67% (4/6) 2.39 0.003165 0.021909
GO:0044238 primary metabolic process 66.67% (4/6) 2.45 0.002698 0.022074
GO:0050896 response to stimulus 33.33% (2/6) 4.67 0.002474 0.022262
GO:0006725 cellular aromatic compound metabolic process 33.33% (2/6) 3.92 0.006854 0.023726
GO:1901360 organic cyclic compound metabolic process 33.33% (2/6) 3.89 0.007122 0.023741
GO:0008654 phospholipid biosynthetic process 16.67% (1/6) 7.06 0.007458 0.023972
GO:0046483 heterocycle metabolic process 33.33% (2/6) 3.92 0.006839 0.024621
GO:0008037 cell recognition 16.67% (1/6) 6.76 0.009206 0.027618
GO:0048544 recognition of pollen 16.67% (1/6) 6.76 0.009206 0.027618
GO:0033554 cellular response to stress 16.67% (1/6) 6.31 0.012549 0.028236
GO:0006974 DNA damage response 16.67% (1/6) 6.31 0.012549 0.028236
GO:1901137 carbohydrate derivative biosynthetic process 16.67% (1/6) 6.31 0.012549 0.028236
GO:0051716 cellular response to stimulus 16.67% (1/6) 6.31 0.012549 0.028236
GO:0004674 protein serine/threonine kinase activity 16.67% (1/6) 6.61 0.010224 0.028756
GO:0044249 cellular biosynthetic process 33.33% (2/6) 3.64 0.009979 0.028972
GO:0006644 phospholipid metabolic process 16.67% (1/6) 6.55 0.010661 0.029075
GO:1901576 organic substance biosynthetic process 33.33% (2/6) 3.48 0.012289 0.030723
GO:0043170 macromolecule metabolic process 50.0% (3/6) 2.47 0.012004 0.030867
GO:0006281 DNA repair 16.67% (1/6) 6.4 0.011823 0.031297
GO:0009058 biosynthetic process 33.33% (2/6) 3.31 0.015563 0.032574
GO:0034641 cellular nitrogen compound metabolic process 33.33% (2/6) 3.32 0.01522 0.032615
GO:0006807 nitrogen compound metabolic process 50.0% (3/6) 2.35 0.015089 0.033122
GO:0006351 DNA-templated transcription 16.67% (1/6) 5.83 0.017474 0.035743
GO:0090407 organophosphate biosynthetic process 16.67% (1/6) 5.59 0.02065 0.040402
GO:0006979 response to oxidative stress 16.67% (1/6) 5.62 0.020217 0.040435
GO:0006259 DNA metabolic process 16.67% (1/6) 5.5 0.021947 0.042026
GO:1901135 carbohydrate derivative metabolic process 16.67% (1/6) 5.42 0.023098 0.043309
GO:0004601 peroxidase activity 16.67% (1/6) 5.34 0.024392 0.043906
GO:0016684 oxidoreductase activity, acting on peroxide as acceptor 16.67% (1/6) 5.34 0.024392 0.043906
GO:0019637 organophosphate metabolic process 16.67% (1/6) 5.14 0.028123 0.045197
GO:0008610 lipid biosynthetic process 16.67% (1/6) 5.16 0.027693 0.045316
GO:0006796 phosphate-containing compound metabolic process 33.33% (2/6) 2.87 0.027431 0.045718
GO:0006793 phosphorus metabolic process 33.33% (2/6) 2.87 0.027431 0.045718
GO:0016209 antioxidant activity 16.67% (1/6) 5.25 0.025972 0.045833
GO:0032774 RNA biosynthetic process 16.67% (1/6) 5.21 0.026689 0.046193
GO:0044255 cellular lipid metabolic process 16.67% (1/6) 5.08 0.029268 0.046213
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_13 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_20 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_24 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_34 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_143 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_168 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_182 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_234 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_276 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (6) (download table)

InterPro Domains

GO Terms

Family Terms