Heatmap: Cluster_388 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra010979 (LpxC3)
-0.25 0.92 0.62 -0.78 0.14 -0.22 -0.71 -1.07 -0.81 -0.49 -0.15 -0.3 -0.16 0.21 0.87 -0.1 0.31 0.6 -0.75 -0.46 -0.45 0.14 0.55 -0.75 -0.12 -0.07 -0.2 -0.45 0.13 0.49 0.44
Bra019864 (RDA2)
-1.02 0.69 0.27 -0.87 -0.28 -0.84 -0.53 -1.58 -0.49 0.32 -0.18 0.31 0.22 0.53 1.18 0.88 0.31 0.97 -0.71 -0.75 -1.68 -0.37 0.95 -0.22 -0.11 -0.72 -0.24 -0.65 -0.43 0.45 -0.91
Bra024267 (PRX69)
0.3 2.38 - - - -0.02 -0.11 - - - - -0.01 1.71 1.08 2.36 0.22 - 0.21 - - - 0.93 - - - - - 2.24 - 0.14 0.1
Bra033459 (NRPD11)
-1.3 -0.22 -0.18 -1.56 -0.33 -0.87 -0.42 -0.01 0.04 -0.68 0.04 -0.02 0.16 0.21 0.42 0.6 0.64 1.03 -0.01 0.2 -0.24 0.48 0.91 0.1 -0.28 -0.23 0.11 -0.9 -0.95 -0.41 0.21
Bra039423 (RPL18)
-0.58 2.45 2.37 1.73 - -0.75 - -0.78 - - - - 1.9 - 1.84 - - -0.74 - - - - 1.4 -0.71 - - - - - 0.74 1.25
-1.04 -0.26 0.17 -1.15 -0.55 -0.1 -0.3 -0.47 -0.36 0.48 -0.07 0.31 -0.61 -0.19 0.93 0.99 0.82 0.47 0.3 0.35 -0.04 0.54 0.86 -0.25 -0.83 -0.71 -0.3 -0.73 -1.67 -0.29 -0.52

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.