Coexpression cluster: Cluster_39 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0036211 protein modification process 12.74% (27/212) 1.39 5e-06 0.000733
GO:0043412 macromolecule modification 13.21% (28/212) 1.4 3e-06 0.000841
GO:0016567 protein ubiquitination 2.83% (6/212) 3.41 2.3e-05 0.002376
GO:0032446 protein modification by small protein conjugation 2.83% (6/212) 3.32 3.3e-05 0.002534
GO:0003824 catalytic activity 30.66% (65/212) 0.65 7.7e-05 0.003902
GO:0140096 catalytic activity, acting on a protein 13.21% (28/212) 1.14 7.2e-05 0.004391
GO:0004842 ubiquitin-protein transferase activity 2.83% (6/212) 3.01 0.000111 0.004823
GO:0019787 ubiquitin-like protein transferase activity 2.83% (6/212) 2.94 0.000144 0.005472
GO:0016755 aminoacyltransferase activity 2.83% (6/212) 2.86 0.000191 0.00644
GO:0004672 protein kinase activity 9.43% (20/212) 1.23 0.000394 0.009215
GO:0016740 transferase activity 15.57% (33/212) 0.89 0.000425 0.009235
GO:0070647 protein modification by small protein conjugation or removal 2.83% (6/212) 2.67 0.000393 0.009967
GO:0016310 phosphorylation 9.43% (20/212) 1.24 0.000368 0.010161
GO:0005992 trehalose biosynthetic process 1.42% (3/212) 4.27 0.000503 0.010185
GO:0006468 protein phosphorylation 9.43% (20/212) 1.24 0.000346 0.010503
GO:0005991 trehalose metabolic process 1.42% (3/212) 4.18 0.000609 0.011576
GO:0001932 regulation of protein phosphorylation 0.94% (2/212) 5.13 0.001426 0.012384
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity 0.94% (2/212) 5.13 0.001426 0.012384
GO:0042325 regulation of phosphorylation 0.94% (2/212) 5.13 0.001426 0.012384
GO:0019900 kinase binding 0.94% (2/212) 5.13 0.001426 0.012384
GO:0043549 regulation of kinase activity 0.94% (2/212) 5.13 0.001426 0.012384
GO:0019901 protein kinase binding 0.94% (2/212) 5.13 0.001426 0.012384
GO:1904029 regulation of cyclin-dependent protein kinase activity 0.94% (2/212) 5.13 0.001426 0.012384
GO:0051338 regulation of transferase activity 0.94% (2/212) 5.13 0.001426 0.012384
GO:0045859 regulation of protein kinase activity 0.94% (2/212) 5.13 0.001426 0.012384
GO:0071900 regulation of protein serine/threonine kinase activity 0.94% (2/212) 5.13 0.001426 0.012384
GO:0016773 phosphotransferase activity, alcohol group as acceptor 9.43% (20/212) 1.16 0.000701 0.012542
GO:0006793 phosphorus metabolic process 9.43% (20/212) 1.05 0.001729 0.012817
GO:0006796 phosphate-containing compound metabolic process 9.43% (20/212) 1.05 0.001729 0.012817
GO:0016746 acyltransferase activity 3.77% (8/212) 1.85 0.001873 0.013241
GO:0008152 metabolic process 21.23% (45/212) 0.63 0.001836 0.013287
GO:0042445 hormone metabolic process 0.94% (2/212) 5.01 0.001705 0.013291
GO:0010817 regulation of hormone levels 0.94% (2/212) 5.01 0.001705 0.013291
GO:0019139 cytokinin dehydrogenase activity 0.94% (2/212) 5.01 0.001705 0.013291
GO:0009690 cytokinin metabolic process 0.94% (2/212) 5.01 0.001705 0.013291
GO:0051726 regulation of cell cycle 1.42% (3/212) 4.05 0.000795 0.013424
GO:0016301 kinase activity 9.43% (20/212) 1.14 0.000848 0.013566
GO:0043687 post-translational protein modification 2.83% (6/212) 2.42 0.000964 0.01465
GO:0046351 disaccharide biosynthetic process 1.42% (3/212) 3.93 0.001013 0.014662
GO:0009312 oligosaccharide biosynthetic process 1.42% (3/212) 3.89 0.001093 0.015105
GO:0005984 disaccharide metabolic process 1.42% (3/212) 3.53 0.002248 0.015534
GO:0071704 organic substance metabolic process 20.28% (43/212) 0.67 0.00125 0.015834
GO:0009311 oligosaccharide metabolic process 1.42% (3/212) 3.5 0.00238 0.016077
GO:0019538 protein metabolic process 13.21% (28/212) 0.88 0.001342 0.01632
GO:0016772 transferase activity, transferring phosphorus-containing groups 9.91% (21/212) 1.06 0.00124 0.016385
GO:1901564 organonitrogen compound metabolic process 14.15% (30/212) 0.77 0.002983 0.019296
GO:0008150 biological_process 32.55% (69/212) 0.44 0.002979 0.019684
GO:0044238 primary metabolic process 18.87% (40/212) 0.63 0.003266 0.020686
GO:0065008 regulation of biological quality 0.94% (2/212) 4.34 0.004314 0.026762
GO:0006631 fatty acid metabolic process 1.42% (3/212) 3.15 0.004734 0.028781
GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors 0.94% (2/212) 3.89 0.008006 0.04772
GO:0031399 regulation of protein modification process 0.94% (2/212) 3.84 0.008617 0.048509
GO:0019220 regulation of phosphate metabolic process 0.94% (2/212) 3.84 0.008617 0.048509
GO:0051174 regulation of phosphorus metabolic process 0.94% (2/212) 3.84 0.008617 0.048509
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_1 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_3 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_4 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_6 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_11 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_28 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_30 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_33 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_34 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_40 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_46 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_48 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_50 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_59 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_61 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_65 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_69 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_71 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_80 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_81 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_84 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_87 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_89 0.016 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_91 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_101 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_104 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_105 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_110 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_112 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_124 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_133 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_144 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_145 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_159 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_167 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_173 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_174 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_175 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_179 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_183 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_195 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_199 0.015 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_204 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_213 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_214 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_215 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_221 0.015 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_224 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_234 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_236 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_254 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_255 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_263 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_265 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_266 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_277 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_37 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (212) (download table)

InterPro Domains

GO Terms

Family Terms