Coexpression cluster: Cluster_53 (Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006259 DNA metabolic process 13.33% (14/105) 4.58 0.0 0.0
GO:0006260 DNA replication 6.67% (7/105) 5.81 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 16.19% (17/105) 2.82 0.0 0.0
GO:0090304 nucleic acid metabolic process 15.24% (16/105) 2.97 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 16.19% (17/105) 2.67 0.0 0.0
GO:0046483 heterocycle metabolic process 16.19% (17/105) 2.67 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 16.19% (17/105) 2.62 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 17.14% (18/105) 2.36 0.0 0.0
GO:0044237 cellular metabolic process 20.95% (22/105) 1.61 2e-06 4.6e-05
GO:0140097 catalytic activity, acting on DNA 4.76% (5/105) 4.53 2e-06 4.6e-05
GO:0043170 macromolecule metabolic process 20.0% (21/105) 1.64 3e-06 4.8e-05
GO:0006807 nitrogen compound metabolic process 20.95% (22/105) 1.51 6e-06 9.9e-05
GO:0006281 DNA repair 4.76% (5/105) 3.97 1.7e-05 0.000231
GO:0003677 DNA binding 8.57% (9/105) 2.62 1.6e-05 0.000238
GO:0006974 DNA damage response 4.76% (5/105) 3.85 2.5e-05 0.000283
GO:0033554 cellular response to stress 4.76% (5/105) 3.85 2.5e-05 0.000283
GO:0051716 cellular response to stimulus 4.76% (5/105) 3.85 2.5e-05 0.000283
GO:0009987 cellular process 24.76% (26/105) 1.17 5.5e-05 0.000592
GO:0044238 primary metabolic process 20.95% (22/105) 1.2 0.000172 0.001753
GO:0003887 DNA-directed DNA polymerase activity 1.9% (2/105) 6.21 0.000286 0.002779
GO:0071704 organic substance metabolic process 20.95% (22/105) 1.12 0.000362 0.00334
GO:0005488 binding 32.38% (34/105) 0.82 0.00038 0.003352
GO:0005524 ATP binding 11.43% (12/105) 1.58 0.00066 0.005569
GO:0034061 DNA polymerase activity 1.9% (2/105) 5.53 0.000794 0.006415
GO:0032559 adenyl ribonucleotide binding 11.43% (12/105) 1.51 0.001042 0.007777
GO:0006270 DNA replication initiation 1.9% (2/105) 5.36 0.001017 0.007891
GO:0008152 metabolic process 20.95% (22/105) 0.99 0.001288 0.009258
GO:0030554 adenyl nucleotide binding 11.43% (12/105) 1.42 0.001781 0.012343
GO:0003678 DNA helicase activity 1.9% (2/105) 4.83 0.002172 0.014532
GO:0035639 purine ribonucleoside triphosphate binding 11.43% (12/105) 1.36 0.002412 0.015598
GO:1901265 nucleoside phosphate binding 12.38% (13/105) 1.25 0.003058 0.018541
GO:0000166 nucleotide binding 12.38% (13/105) 1.25 0.003058 0.018541
GO:0017076 purine nucleotide binding 11.43% (12/105) 1.22 0.005473 0.019664
GO:0035312 5'-3' DNA exonuclease activity 0.95% (1/105) 7.53 0.005407 0.01979
GO:0045145 single-stranded DNA 5'-3' DNA exonuclease activity 0.95% (1/105) 7.53 0.005407 0.01979
GO:0004529 DNA exonuclease activity 0.95% (1/105) 7.53 0.005407 0.01979
GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor 0.95% (1/105) 7.53 0.005407 0.01979
GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor 0.95% (1/105) 7.53 0.005407 0.01979
GO:0016895 DNA exonuclease activity, producing 5'-phosphomonoesters 0.95% (1/105) 7.53 0.005407 0.01979
GO:0061731 ribonucleoside-diphosphate reductase activity 0.95% (1/105) 7.53 0.005407 0.01979
GO:0106068 SUMO ligase complex 0.95% (1/105) 7.53 0.005407 0.01979
GO:0008297 single-stranded DNA exodeoxyribonuclease activity 0.95% (1/105) 7.53 0.005407 0.01979
GO:0004536 DNA nuclease activity 0.95% (1/105) 7.53 0.005407 0.01979
GO:0030915 Smc5-Smc6 complex 0.95% (1/105) 7.53 0.005407 0.01979
GO:0008409 5'-3' exonuclease activity 0.95% (1/105) 7.53 0.005407 0.01979
GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 0.95% (1/105) 7.53 0.005407 0.01979
GO:0043625 delta DNA polymerase complex 0.95% (1/105) 7.53 0.005407 0.01979
GO:0042575 DNA polymerase complex 0.95% (1/105) 7.53 0.005407 0.01979
GO:0032555 purine ribonucleotide binding 11.43% (12/105) 1.3 0.003485 0.019887
GO:0140640 catalytic activity, acting on a nucleic acid 4.76% (5/105) 2.31 0.003406 0.020023
GO:0032553 ribonucleotide binding 11.43% (12/105) 1.28 0.003774 0.020917
GO:0003676 nucleic acid binding 9.52% (10/105) 1.34 0.006276 0.021741
GO:0051276 chromosome organization 1.9% (2/105) 4.07 0.006233 0.021984
GO:0008094 ATP-dependent activity, acting on DNA 1.9% (2/105) 4.36 0.004187 0.022561
GO:0097367 carbohydrate derivative binding 11.43% (12/105) 1.26 0.004371 0.022916
GO:0036094 small molecule binding 12.38% (13/105) 1.19 0.004567 0.023318
GO:0043168 anion binding 11.43% (12/105) 1.13 0.008531 0.029037
GO:0005664 nuclear origin of replication recognition complex 0.95% (1/105) 6.53 0.010784 0.034868
GO:0006269 DNA replication, synthesis of RNA primer 0.95% (1/105) 6.53 0.010784 0.034868
GO:0006471 obsolete protein ADP-ribosylation 0.95% (1/105) 6.53 0.010784 0.034868
GO:1990234 transferase complex 1.9% (2/105) 3.62 0.011412 0.036293
GO:0043167 ion binding 15.24% (16/105) 0.88 0.012669 0.039642
GO:0004386 helicase activity 1.9% (2/105) 3.49 0.013707 0.042208
GO:0005634 nucleus 2.86% (3/105) 2.56 0.014427 0.043732
GO:0043138 3'-5' DNA helicase activity 0.95% (1/105) 5.95 0.016133 0.047421
GO:0016725 oxidoreductase activity, acting on CH or CH2 groups 0.95% (1/105) 5.95 0.016133 0.047421
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_36 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_44 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_65 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_75 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_79 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_93 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_119 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_122 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_130 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_151 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (105) (download table)

InterPro Domains

GO Terms

Family Terms