Coexpression cluster: Cluster_140 (Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0043232 intracellular non-membrane-bounded organelle 29.27% (12/41) 4.79 0.0 0.0
GO:0043228 non-membrane-bounded organelle 29.27% (12/41) 4.79 0.0 0.0
GO:0043604 amide biosynthetic process 26.83% (11/41) 4.81 0.0 0.0
GO:0043043 peptide biosynthetic process 26.83% (11/41) 4.83 0.0 0.0
GO:0003735 structural constituent of ribosome 26.83% (11/41) 4.84 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 31.71% (13/41) 4.16 0.0 0.0
GO:0005840 ribosome 26.83% (11/41) 4.89 0.0 0.0
GO:0006412 translation 26.83% (11/41) 4.85 0.0 0.0
GO:0006518 peptide metabolic process 26.83% (11/41) 4.72 0.0 0.0
GO:0043603 amide metabolic process 26.83% (11/41) 4.68 0.0 0.0
GO:0005198 structural molecule activity 26.83% (11/41) 4.64 0.0 0.0
GO:0009059 macromolecule biosynthetic process 29.27% (12/41) 4.25 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 29.27% (12/41) 4.25 0.0 0.0
GO:0043229 intracellular organelle 29.27% (12/41) 4.05 0.0 0.0
GO:0043226 organelle 29.27% (12/41) 4.05 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 34.15% (14/41) 3.47 0.0 0.0
GO:0044249 cellular biosynthetic process 31.71% (13/41) 3.69 0.0 0.0
GO:1901576 organic substance biosynthetic process 31.71% (13/41) 3.55 0.0 0.0
GO:0009058 biosynthetic process 31.71% (13/41) 3.39 0.0 0.0
GO:0005575 cellular_component 41.46% (17/41) 2.39 0.0 0.0
GO:0110165 cellular anatomical entity 36.59% (15/41) 2.49 0.0 0.0
GO:0044237 cellular metabolic process 39.02% (16/41) 2.12 0.0 1e-06
GO:0009987 cellular process 41.46% (17/41) 1.58 1.4e-05 9.1e-05
GO:0006807 nitrogen compound metabolic process 34.15% (14/41) 1.81 1.9e-05 0.000116
GO:0008152 metabolic process 39.02% (16/41) 1.56 3.3e-05 0.000197
GO:0043170 macromolecule metabolic process 31.71% (13/41) 1.82 3.7e-05 0.000211
GO:1901564 organonitrogen compound metabolic process 29.27% (12/41) 1.81 8.8e-05 0.000482
GO:0019538 protein metabolic process 26.83% (11/41) 1.89 0.000113 0.000596
GO:0044238 primary metabolic process 34.15% (14/41) 1.53 0.000154 0.000785
GO:0071704 organic substance metabolic process 34.15% (14/41) 1.48 0.000232 0.001145
GO:0098796 membrane protein complex 9.76% (4/41) 3.64 0.000295 0.001406
GO:0006413 translational initiation 4.88% (2/41) 5.89 0.000527 0.002436
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain 4.88% (2/41) 5.4 0.001042 0.004674
GO:0008150 biological_process 43.9% (18/41) 1.01 0.001275 0.005552
GO:0003743 translation initiation factor activity 4.88% (2/41) 5.22 0.001337 0.005652
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 4.88% (2/41) 5.08 0.001609 0.006615
GO:0042301 phosphate ion binding 2.44% (1/41) 8.89 0.002106 0.007603
GO:0031647 regulation of protein stability 2.44% (1/41) 8.89 0.002106 0.007603
GO:0050821 protein stabilization 2.44% (1/41) 8.89 0.002106 0.007603
GO:0097747 RNA polymerase activity 4.88% (2/41) 4.91 0.002031 0.007911
GO:0034062 5'-3' RNA polymerase activity 4.88% (2/41) 4.91 0.002031 0.007911
GO:0009521 photosystem 4.88% (2/41) 4.78 0.00243 0.008564
GO:0034654 nucleobase-containing compound biosynthetic process 7.32% (3/41) 3.43 0.00275 0.009466
GO:0090079 translation regulator activity, nucleic acid binding 4.88% (2/41) 4.57 0.00325 0.010233
GO:0008135 translation factor activity, RNA binding 4.88% (2/41) 4.57 0.00325 0.010233
GO:0045182 translation regulator activity 4.88% (2/41) 4.57 0.00325 0.010233
GO:0015979 photosynthesis 4.88% (2/41) 4.6 0.003092 0.010401
GO:0015078 proton transmembrane transporter activity 4.88% (2/41) 4.4 0.004091 0.012615
GO:0019438 aromatic compound biosynthetic process 7.32% (3/41) 3.18 0.004462 0.013478
GO:0018130 heterocycle biosynthetic process 7.32% (3/41) 3.14 0.004743 0.01404
GO:0032991 protein-containing complex 9.76% (4/41) 2.53 0.004973 0.014431
GO:0006351 DNA-templated transcription 4.88% (2/41) 4.11 0.006043 0.0172
GO:1901362 organic cyclic compound biosynthetic process 7.32% (3/41) 2.98 0.006455 0.018024
GO:0009055 electron transfer activity 4.88% (2/41) 3.94 0.007616 0.020875
GO:0016779 nucleotidyltransferase activity 4.88% (2/41) 3.86 0.008465 0.022372
GO:0006139 nucleobase-containing compound metabolic process 9.76% (4/41) 2.31 0.008361 0.022499
GO:0046483 heterocycle metabolic process 9.76% (4/41) 2.18 0.011368 0.029007
GO:0006725 cellular aromatic compound metabolic process 9.76% (4/41) 2.19 0.011185 0.029041
GO:0016070 RNA metabolic process 7.32% (3/41) 2.66 0.011832 0.029679
GO:1901360 organic cyclic compound metabolic process 9.76% (4/41) 2.13 0.012902 0.031826
GO:0032774 RNA biosynthetic process 4.88% (2/41) 3.52 0.013151 0.031907
GO:0065008 regulation of biological quality 2.44% (1/41) 5.8 0.017767 0.041737
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) 2.44% (1/41) 5.8 0.017767 0.041737
GO:0022890 inorganic cation transmembrane transporter activity 4.88% (2/41) 3.25 0.018724 0.043299
GO:0009522 photosystem I 2.44% (1/41) 5.64 0.019836 0.045166
GO:0008324 monoatomic cation transmembrane transporter activity 4.88% (2/41) 3.2 0.020157 0.0452
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_197 0.021 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_15 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_17 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_34 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_38 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_39 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_45 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_49 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_67 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_73 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_83 0.019 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_86 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_87 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_90 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_141 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_145 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_153 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_157 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_198 0.056 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_242 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_254 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_21 0.018 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_27 0.046 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Marchantia polymorpha Marchantia polymorpha (Mpo) Coexpression Clusters (HCCA Algorithm) Cluster_153 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (41) (download table)

InterPro Domains

GO Terms

Family Terms