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  5. Spov3_chr3.03205

Spov3_chr3.03205


Description : not classified


Gene families : OG0000442 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000442_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr3.03205
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_813

Target Alias Description ECC score Gene Family Method Actions
Spov3_C0068.00012 RH27 not classified 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S01.00019 ABCG43 not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.02428 ATRAD4, RAD4 not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.02431 No alias not classified 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004649 poly(ADP-ribose) glycohydrolase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006282 regulation of DNA repair IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0016043 cellular component organization IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0030599 pectinesterase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0035673 oligopeptide transmembrane transporter activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0042545 cell wall modification IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0042887 amide transmembrane transporter activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0045229 external encapsulating structure organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0048583 regulation of response to stimulus IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051052 regulation of DNA metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0052689 carboxylic ester hydrolase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0071554 cell wall organization or biogenesis IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0071555 cell wall organization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0071840 cellular component organization or biogenesis IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0080134 regulation of response to stress IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0080135 regulation of cellular response to stress IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:1904680 peptide transmembrane transporter activity IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR041577 RT_RNaseH_2 610 697
IPR000477 RT_dom 421 579
IPR041588 Integrase_H2C2 813 870
No external refs found!