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Aliases : ATSAP18, SAP18
Description : associated component *(SAP18) of histone deacetylase machineries
Gene families : OG0000077 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000077_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Spinacia oleracea (Sol) PCC: Spov3_chr3.01593 | |
| Cluster | Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_3 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Spov3_C0021.00031 | BAL, SNC1 | associated component *(SAP18) of histone deacetylase machineries | 0.01 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_C0447.00001 | ATSAP18, SAP18 | associated component *(SAP18) of histone deacetylase machineries | 0.07 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_C0801.00001 | ATSAP18, SAP18 | associated component *(SAP18) of histone deacetylase machineries | 0.07 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_S16.00009 | CHA18, CHR18 | not classified | 0.06 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr1.02927 | CHA18, CHR18 | not classified | 0.04 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr2.03416 | ATSAP18, SAP18 | associated component *(SAP18) of histone deacetylase machineries | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr3.01836 | ATTOC64-V,... | not classified | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr3.02126 | ATSAP18, SAP18 | associated component *(SAP18) of histone deacetylase machineries | 0.09 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr3.03469 | ATSAP18, SAP18 | associated component *(SAP18) of histone deacetylase machineries | 0.07 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr4.00102 | ATSAP18, SAP18 | associated component *(SAP18) of histone deacetylase machineries | 0.04 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr5.01237 | No alias | not classified | 0.01 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr5.04097 | ATU2AF65B, U2AF65b | not classified | 0.01 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0005634 | nucleus | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0007034 | vacuolar transport | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0008234 | cysteine-type peptidase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0140110 | transcription regulator activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR010516 | SAP18 | 56 | 116 |
| No external refs found! |