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Aliases : AtSF1, SOT4, SF1
Description : pre-mRNA splicing factor *(SF1)
Gene families : OG0067056 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Spinacia oleracea (Sol) PCC: Spov3_chr3.01286 | |
| Cluster | Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_162 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000151 | ubiquitin ligase complex | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0000166 | nucleotide binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0003712 | transcription coregulator activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0003729 | mRNA binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0004674 | protein serine/threonine kinase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0005515 | protein binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0005524 | ATP binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0005685 | U1 snRNP | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0006325 | chromatin organization | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0006338 | chromatin remodeling | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0006366 | transcription by RNA polymerase II | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0006376 | mRNA splice site recognition | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0006401 | RNA catabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0006402 | mRNA catabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0009056 | catabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0009057 | macromolecule catabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0009890 | negative regulation of biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0010468 | regulation of gene expression | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0010558 | negative regulation of macromolecule biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0010629 | negative regulation of gene expression | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0016070 | RNA metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0016071 | mRNA metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0016592 | mediator complex | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0016746 | acyltransferase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0016755 | aminoacyltransferase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0017076 | purine nucleotide binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0019222 | regulation of metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0019439 | aromatic compound catabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0022618 | protein-RNA complex assembly | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0031324 | negative regulation of cellular metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0031327 | negative regulation of cellular biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0032553 | ribonucleotide binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0032991 | protein-containing complex | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0034450 | ubiquitin-ubiquitin ligase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0036094 | small molecule binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0043168 | anion binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0043933 | protein-containing complex organization | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0044248 | cellular catabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0046700 | heterocycle catabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0048519 | negative regulation of biological process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0048523 | negative regulation of cellular process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0050789 | regulation of biological process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0050794 | regulation of cellular process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0061630 | ubiquitin protein ligase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0061659 | ubiquitin-like protein ligase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0065007 | biological regulation | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0071824 | protein-DNA complex organization | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0071826 | protein-RNA complex organization | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0097525 | spliceosomal snRNP complex | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0120114 | Sm-like protein family complex | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Spinacia oleracea GO terms from Neighborhoods |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0140657 | ATP-dependent activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:1901361 | organic cyclic compound catabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:1901575 | organic substance catabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:2001070 | starch binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| No external refs found! |