Spov3_chr3.01280 (ATDCL3, DCL3)

Aliases : ATDCL3, DCL3

Description : endoribonuclease *(DCL3)

Gene families : OG0019933 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr3.01280
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_54

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	RNA endonuclease activity	None	Extended
MF	GO:0004525	ribonuclease III activity	IEA	Interproscan
MF	GO:0004540	RNA nuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	RNA endonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0000166	nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003682	chromatin binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004652	obsolete polynucleotide adenylyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004672	protein kinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004673	protein histidine kinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004860	protein kinase inhibitor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004861	cyclin-dependent protein serine/threonine kinase inhibitor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006468	protein phosphorylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006793	phosphorus metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006813	potassium ion transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006835	dicarboxylic acid transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0007165	signal transduction	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0015276	ligand-gated monoatomic ion channel activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0015711	organic anion transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0015740	C4-dicarboxylate transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0015743	malate transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0015849	organic acid transport	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016301	kinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016310	phosphorylation	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0016459	myosin complex	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016740	transferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016779	nucleotidyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019207	kinase regulator activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019210	kinase inhibitor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019887	protein kinase regulator activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0022834	ligand-gated channel activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0022836	gated channel activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0022839	monoatomic ion gated channel activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0030291	protein serine/threonine kinase inhibitor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0030554	adenyl nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0036094	small molecule binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0036211	protein modification process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0043167	ion binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043412	macromolecule modification	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0043531	ADP binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043631	obsolete RNA polyadenylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0046942	carboxylic acid transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051726	regulation of cell cycle	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0071805	potassium ion transmembrane transport	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140299	small molecule sensor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:1901265	nucleoside phosphate binding	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR003100	PAZ_dom	238	367
IPR000999	RNase_III_dom	625	732
IPR000999	RNase_III_dom	411	545

External Links

No external refs found!

Spov3_chr6.02516 (PDS5A, PDS5, AtPDS5A)

Spov3_chr3.01280 (ATDCL3, DCL3)

Expression Profile

Co-expression Networks

Functional Annotation