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  5. Bra009695

Bra009695 (ATSGS3, SGS3)


Aliases : ATSGS3, SGS3

Description : stabilization factor *(SGS3) of transacting siRNA pathway


Gene families : OG0023906 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra009695
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_274


Type GO Term Name Evidence Source
BP GO:0031047 regulatory ncRNA-mediated gene silencing IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0000152 nuclear ubiquitin ligase complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0000375 RNA splicing, via transesterification reactions IEP Brassica rapa GO terms from Neighborhoods
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Brassica rapa GO terms from Neighborhoods
BP GO:0000398 mRNA splicing, via spliceosome IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003872 6-phosphofructokinase activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005680 anaphase-promoting complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006397 mRNA processing IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006479 protein methylation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0007346 regulation of mitotic cell cycle IEP Brassica rapa GO terms from Neighborhoods
BP GO:0008213 protein alkylation IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008270 zinc ion binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008443 phosphofructokinase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP Brassica rapa GO terms from Neighborhoods
BP GO:0010564 regulation of cell cycle process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016071 mRNA metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016570 histone modification IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016571 histone methylation IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Brassica rapa GO terms from Neighborhoods
MF GO:0017069 snRNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0017070 U6 snRNA binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0018022 peptidyl-lysine methylation IEP Brassica rapa GO terms from Neighborhoods
MF GO:0018024 obsolete histone lysine N-methyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0018193 peptidyl-amino acid modification IEP Brassica rapa GO terms from Neighborhoods
BP GO:0018205 peptidyl-lysine modification IEP Brassica rapa GO terms from Neighborhoods
MF GO:0019200 carbohydrate kinase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0019207 kinase regulator activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0019887 protein kinase regulator activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP Brassica rapa GO terms from Neighborhoods
MF GO:0030623 U5 snRNA binding IEP Brassica rapa GO terms from Neighborhoods
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0032787 monocarboxylic acid metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0033043 regulation of organelle organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0033044 regulation of chromosome organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0033045 regulation of sister chromatid segregation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0034968 histone lysine methylation IEP Brassica rapa GO terms from Neighborhoods
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051128 regulation of cellular component organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051726 regulation of cell cycle IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051983 regulation of chromosome segregation IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901987 regulation of cell cycle phase transition IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Brassica rapa GO terms from Neighborhoods
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR005381 Znf-XS_domain 218 255
IPR005380 XS_domain 288 400
No external refs found!