Spov3_chr2.04381

Description : not classified

Gene families : OG0017196 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr2.04381
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_41

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006298	mismatch repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0030983	mismatched DNA binding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003747	translation release factor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003824	catalytic activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004325	ferrochelatase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004813	alanine-tRNA ligase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005525	GTP binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006082	organic acid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006399	tRNA metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006415	translational termination	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006419	alanyl-tRNA aminoacylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006520	amino acid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006783	heme biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008079	translation termination factor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0009523	photosystem II	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0015979	photosynthesis	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016730	oxidoreductase activity, acting on iron-sulfur proteins as donors	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016853	isomerase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016859	cis-trans isomerase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016874	ligase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0017038	protein import	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019001	guanyl nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0019752	carboxylic acid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0019898	extrinsic component of membrane	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0022411	cellular component disassembly	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0032984	protein-containing complex disassembly	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0033013	tetrapyrrole metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0034061	DNA polymerase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034660	ncRNA metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0042168	heme metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0042440	pigment metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043038	amino acid activation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043039	tRNA aminoacylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043436	oxoacid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0044281	small molecule metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0046148	pigment biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:1990204	oxidoreductase complex	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002625	Smr_dom	840	904
IPR000432	DNA_mismatch_repair_MutS_C	433	617
IPR046893	MSSS	750	790

External Links

No external refs found!

Spov3_chr2.04381

Expression Profile

Co-expression Networks

Functional Annotation