Spov3_chr2.04184 (CHR25, ATRAD54, RAD54)

Aliases : CHR25, ATRAD54, RAD54

Description : not classified

Gene families : OG0000151 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000151_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr2.04184
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_141

Target	Alias	Description	ECC score	Gene Family Method
Spov3_C0004.00020	AtGH9B18, CEL6, GH9B18	not classified	0.04	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.02472	No alias	not classified	0.04	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.05023	ATMSRB6, MSRB6	not classified	0.06	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.02505	No alias	not classified	0.07	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.02588	No alias	not classified	0.04	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.02866	No alias	not classified	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.03540	No alias	not classified	0.04	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006508	proteolysis	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008234	cysteine-type peptidase activity	IEA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000154	rRNA modification	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0001510	RNA methylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006835	dicarboxylic acid transport	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008170	N-methyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008649	rRNA methyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0015711	organic anion transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0015740	C4-dicarboxylate transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0015743	malate transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0015849	organic acid transport	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016436	rRNA (uridine) methyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0031167	rRNA methylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0046942	carboxylic acid transport	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0070042	rRNA (uridine-N3-)-methyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0070475	rRNA base methylation	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR003653	Peptidase_C48_C	539	636

External Links

No external refs found!