- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : LSU processome maturation factor *(Sdo1)
Gene families : OG0000710 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000710_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Spinacia oleracea (Sol) PCC: Spov3_chr2.04167 | |
| Cluster | Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_32 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Spov3_C0006.00083 | No alias | LSU processome maturation factor *(Sdo1) | 0.1 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_C0047.00006 | No alias | LSU processome maturation factor *(Sdo1) | 0.1 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_C0059.00012 | No alias | LSU processome maturation factor *(Sdo1) | 0.11 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_S01.00137 | No alias | LSU processome maturation factor *(Sdo1) | 0.1 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr1.01055 | No alias | LSU processome maturation factor *(Sdo1) | 0.08 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr4.02504 | No alias | LSU processome maturation factor *(Sdo1) | 0.07 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0042254 | ribosome biogenesis | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004857 | enzyme inhibitor activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0004866 | endopeptidase inhibitor activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0004867 | serine-type endopeptidase inhibitor activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0006508 | proteolysis | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0008233 | peptidase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0008234 | cysteine-type peptidase activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0009611 | response to wounding | IEP | Spinacia oleracea GO terms from Neighborhoods |
| BP | GO:0015074 | DNA integration | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0030234 | enzyme regulator activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0030414 | peptidase inhibitor activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0061134 | peptidase regulator activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0061135 | endopeptidase regulator activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0098772 | molecular function regulator activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| MF | GO:0140678 | molecular function inhibitor activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR018978 | SDO1/SBDS_central | 49 | 109 |
| No external refs found! |