Spov3_chr2.02484

Description : not classified

Gene families : OG0000246 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000246_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr2.02484
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_14

Target	Alias	Description	ECC score	Gene Family Method
Spov3_S12.00044	NFA2, NFA02, NAP1;2	not classified	0.1	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.02016	No alias	not classified	0.09	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.04502	ISTL5	not classified	0.09	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.01131	No alias	not classified	0.11	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.01132	SnRK3.2, CIPK2	not classified	0.05	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.03798	No alias	not classified	0.09	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.03861	ZRK13	not classified	0.07	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.03866	No alias	not classified	0.1	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.03867	TRM3, AtTRM3	not classified	0.06	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.04862	No alias	not classified	0.09	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0015297	antiporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0022804	active transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0030246	carbohydrate binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0030247	polysaccharide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0042910	xenobiotic transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0055085	transmembrane transport	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001584	Integrase_cat-core	14	88
IPR025312	DUF4216	345	409

External Links

No external refs found!