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  5. Spov3_chr2.01306

Spov3_chr2.01306 (PUB2)


Aliases : PUB2

Description : not classified


Gene families : OG0000061 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000061_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr2.01306
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_355

Target Alias Description ECC score Gene Family Method Actions
Spov3_C0090.00009 No alias not classified 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.03910 No alias not classified 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.04702 No alias not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.01075 PP1R3 not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.00438 GER3, GLP3A,... not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.03077 RAD7a not classified 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.04125 RAD7a not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0000398 mRNA splicing, via spliceosome IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006397 mRNA processing IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0008380 RNA splicing IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0016071 mRNA metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0097525 spliceosomal snRNP complex IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0097526 spliceosomal tri-snRNP complex IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0120114 Sm-like protein family complex IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0140513 nuclear protein-containing complex IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:1990904 ribonucleoprotein complex IEP Spinacia oleracea GO terms from Neighborhoods

No InterPro domains available for this sequence

No external refs found!