Spov3_chr2.01267 (RPT2a)

Aliases : RPT2a

Description : regulatory component *(RPT2) of 26S proteasome

Gene families : OG0001628 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001628_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr2.01267
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_156

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003729	mRNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005685	U1 snRNP	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006376	mRNA splice site recognition	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006479	protein methylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006480	N-terminal protein amino acid methylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0008213	protein alkylation	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019899	enzyme binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0022618	protein-RNA complex assembly	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0031365	N-terminal protein amino acid modification	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0032259	methylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0032324	molybdopterin cofactor biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043414	macromolecule methylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043545	molybdopterin cofactor metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051189	prosthetic group metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0071826	protein-RNA complex organization	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0097525	spliceosomal snRNP complex	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0120114	Sm-like protein family complex	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:1990904	ribonucleoprotein complex	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR032501	Prot_ATP_ID_OB_2nd	113	166
IPR003959	ATPase_AAA_core	226	359
IPR041569	AAA_lid_3	381	425

External Links

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Spov3_chr2.01267 (RPT2a)

Expression Profile

Co-expression Networks

Functional Annotation