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  5. Spov3_chr2.00586

Spov3_chr2.00586 (AtGCN20, AtABCF3,...)


Aliases : AtGCN20, AtABCF3, ABCF3, SCORD5, GCN20

Description : regulatory protein *(GCN20) of eIF2-alpha kinase activity


Gene families : OG0005010 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0005010_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr2.00586
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_2

Target Alias Description ECC score Gene Family Method Actions
Bra027727 DUO3 regulatory protein *(DUO3) of male germ cell division 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0000178 exosome (RNase complex) IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003676 nucleic acid binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003729 mRNA binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004386 helicase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004506 squalene monooxygenase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004527 exonuclease activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006606 protein import into nucleus IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006913 nucleocytoplasmic transport IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008408 3'-5' exonuclease activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0016579 protein deubiquitination IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016887 ATP hydrolysis activity IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0032991 protein-containing complex IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0033365 protein localization to organelle IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0034504 protein localization to nucleus IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0035145 exon-exon junction complex IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051169 nuclear transport IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051170 import into nucleus IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0061608 nuclear import signal receptor activity IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0070646 protein modification by small protein removal IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0072594 establishment of protein localization to organelle IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0090730 Las1 complex IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140104 molecular carrier activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140142 nucleocytoplasmic carrier activity IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0140513 nuclear protein-containing complex IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1901360 organic cyclic compound metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:1902494 catalytic complex IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:1902555 endoribonuclease complex IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:1902911 protein kinase complex IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:1905348 endonuclease complex IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:1905354 exoribonuclease complex IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 523 653
IPR003439 ABC_transporter-like_ATP-bd 195 370
IPR032781 ABC_tran_Xtn 411 490
No external refs found!