Spov3_chr1.03637 (ATMSH5, MSH5)

Aliases : ATMSH5, MSH5

Description : component *(MSH5) of MSH4-MSH5 Holliday junction stabilizing heterodimer

Gene families : OG0009101 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr1.03637
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_112

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006298	mismatch repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0030983	mismatched DNA binding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0002161	aminoacyl-tRNA editing activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003916	DNA topoisomerase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003993	acid phosphatase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005215	transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005575	cellular_component	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005576	extracellular region	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005618	cell wall	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005694	chromosome	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006073	obsolete cellular glucan metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006265	DNA topological change	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0015276	ligand-gated monoatomic ion channel activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0015399	primary active transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0016020	membrane	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0022804	active transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0022834	ligand-gated channel activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0022836	gated channel activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0022839	monoatomic ion gated channel activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0022857	transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0030312	external encapsulating structure	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0048046	apoplast	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0071103	DNA conformation change	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0110165	cellular anatomical entity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140359	ABC-type transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR007696	DNA_mismatch_repair_MutS_core	201	538
IPR000432	DNA_mismatch_repair_MutS_C	589	780

External Links

No external refs found!

Spov3_chr1.03637 (ATMSH5, MSH5)

Expression Profile

Co-expression Networks

Functional Annotation