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  5. Spov3_chr1.03376

Spov3_chr1.03376 (AtSAP60, EMB2776,...)


Aliases : AtSAP60, EMB2776, PRP4, LIS, AtPRP4

Description : component *(PRPF4) of spliceosomal U4/U6 snRNP


Gene families : OG0000244 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000244_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr1.03376
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_34

Target Alias Description ECC score Gene Family Method Actions
Spov3_C0017.00046 AtSAP60,... not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0064.00004 ATKUP1, KUP1,... not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.02388 AtSAP60,... component *(PRPF4) of spliceosomal U4/U6 snRNP 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.02612 AtSAP60,... component *(PRPF4) of spliceosomal U4/U6 snRNP 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.03472 No alias not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001680 WD40_rpt 146 177
IPR001680 WD40_rpt 98 135
IPR001680 WD40_rpt 185 219
IPR001680 WD40_rpt 72 94
No external refs found!