Heatmap: Cluster_34 (Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	Light: 260 uE m-2 s-1	Light: 195 uE m-2 s-1	Light: 130 uE m-2 s-1 (Control)	Light: 65 uE m-2 s-1	Photoperiod: L24	Photoperiod: L18D6	Photoperiod: L13D11 (Control)	Photoperiod: L8D16	RBW: 4:1:1 (Control)	RBW: 4:1:0	RBW: 3:1:1	RBW: 3:1:0	Nitrogen: 0%	Nitrogen: 25%	Nitrogen: 50%	Nitrogen: 100% (Control)	Nitrogen: 150%	Phosphorous: 0%	Phosphorous: 25%	Phosphorous: 50%	Phosphorous: 100% (Control)	Phosphorous: 150%	Potassium: 0%	Potassium: 25%	Potassium: 50%	Potassium: 100% (Control)	Potassium: 150%	Temperature: 20°C (Control)	Temperature: 25°C	Temperature: 30°C
Spov3_C0001.00097	-	-	-	-	0.67	-	1.42	-	-	0.52	-	-	2.15	1.57	2.47	-	-	-	1.05	-	-	-	-	1.74	-	-	-	2.57	-	-
Spov3_C0002.00087	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.71	-	-	-	-	-	-	-	-	-	4.08	-	-
Spov3_C0005.00091	-	-	-	-	-	-	-	3.24	-	-	-	3.27	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.45	-
Spov3_C0006.00064 (FZR1)	1.16	-0.46	-0.42	-0.13	-0.91	-0.64	-0.64	0.24	-0.32	-0.8	0.13	0.02	0.57	0.31	-0.47	-0.61	0.61	0.14	0.04	-1.45	0.19	-0.3	0.37	-0.95	0.12	-0.97	0.08	-0.2	0.99	0.58
Spov3_C0006.00083	-	-	-	-	-	-	1.31	3.38	-	2.55	-	-	-	-	-	-	-	-	1.62	-	-	-	-	-	-	-	-	-	-	3.03
Spov3_C0012.00084	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_C0018.00045	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_C0022.00028	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_C0038.00031 (HDG5)	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_C0044.00018 (PBRP)	-	2.79	1.56	-	-	-	-	2.94	-	1.75	0.39	-	-	0.69	-	-	-	-	-	-	2.63	-	-	-	-	-	-	-	-	-
Spov3_C0048.00006 (YDA)	1.39	-1.12	-	-	-1.24	-1.31	0.24	1.18	-0.22	-	-1.13	-1.16	-0.08	-	1.75	1.23	-1.22	-1.33	-0.22	0.74	0.19	0.95	-0.02	0.74	0.3	-0.11	-0.52	-0.95	-0.13	-0.25
Spov3_C0052.00015 (TPPH)	-	-	-	-	-	-	-	3.33	-	-	-	3.76	-	-	-	-	-	2.67	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_C0065.00007 (UGT76D1)	1.5	-	-	-	-	-	-	-	2.6	2.01	0.47	-	-	0.24	-	-	-	-	1.07	1.8	-	-	-	2.11	-	-	-	2.21	-	-
Spov3_C0066.00007 (MAGL15)	-	-	-	-	-	-	3.04	3.77	-	-	3.02	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_C0068.00006 (NANMT)	-0.72	0.32	-0.41	-0.52	0.24	0.08	-0.31	-0.02	0.5	0.21	0.24	-0.0	0.21	0.6	0.22	0.23	-0.63	0.06	0.09	-0.21	0.22	0.14	-1.15	0.54	0.11	0.01	0.24	-1.21	-0.51	-0.47
Spov3_C0077.00012 (HISN7)	-	-	-	-	-	-	2.56	4.07	-	-	-	-	-	-	-	2.87	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_C0099.00006 (ATM2)	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_C0130.00002 (MTK)	-0.45	0.88	0.92	-	0.76	-	1.96	-0.24	-0.68	-	1.24	-2.13	0.31	-0.31	2.01	-3.14	-0.91	-1.8	-7.88	0.72	-1.47	-25.78	-	2.29	-	-	0.51	-	-0.86	-
Spov3_C0167.00003	0.63	-4.62	1.07	0.38	-0.21	0.52	-	0.01	-2.06	-1.25	0.21	-0.27	0.9	-	1.74	0.73	0.17	0.06	0.79	0.9	-0.45	-	0.66	1.09	0.38	-1.14	-	-	-	-2.1
Spov3_C1749.00001 (AO1)	-	-	-	-	-	-	-	-	3.38	-	-	-	-	-	-	-	-	2.92	-	-	-	-	-	-	-	-	-	3.58	-	-
Spov3_chr1.01393 (BCAT2)	0.66	0.31	-1.06	-0.7	-0.22	0.52	-0.16	0.18	-0.06	-0.02	0.64	-0.4	-0.4	0.28	0.36	0.05	-0.53	-0.26	0.43	-0.12	-0.44	-0.39	0.62	0.1	-0.68	0.59	-0.39	-0.2	-0.3	-0.47
Spov3_chr1.01401	0.19	0.08	0.08	-0.56	0.43	0.32	0.27	0.22	-0.27	0.49	-0.35	0.36	-0.0	0.74	0.03	-0.37	0.07	-0.23	-0.52	-0.43	-0.09	-0.42	-0.27	0.43	-0.38	0.49	-0.27	-0.42	-0.49	-0.59
Spov3_chr1.01497 (RVR1)	-	0.57	1.28	1.31	-	-	-1.7	-1.99	-	-0.16	-1.87	1.05	-0.23	-1.76	1.94	-1.87	-0.21	-0.48	0.17	0.76	-0.43	-2.1	1.05	1.4	-0.92	-0.84	0.47	-0.04	-1.89	-0.37
Spov3_chr1.01646 (SPL1)	0.17	0.39	0.47	-0.22	0.96	-0.61	0.79	-0.48	0.9	-1.09	-0.71	-1.31	-	-0.8	-0.89	-0.12	0.23	0.36	-1.32	-0.92	-1.22	-0.71	-0.08	-1.29	-2.82	-1.89	0.33	1.77	1.05	0.96
Spov3_chr1.01955 (AtOR-like)	1.13	-0.92	-	0.65	1.82	-0.24	0.51	0.97	1.77	-	-0.09	-0.17	-1.22	-1.75	-	-0.53	-	-2.28	0.04	-0.31	-2.13	-	-	-	-	0.87	-	2.44	-	0.83
Spov3_chr1.03376 (LIS)	-	0.6	0.6	-	-	0.21	0.62	0.33	-	0.6	0.46	-	-	0.52	1.9	0.57	1.52	-	-	-	0.15	-	-	1.66	-	-	1.68	-	1.66	-
Spov3_chr1.04799 (ACO2)	3.01	-	-	-	-	-	2.73	-	-	-	-	-	-	-	2.81	3.06	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr1.04982	-	-	-	-	-	-	-	3.19	-	-	-	3.25	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.5	-	-
Spov3_chr2.00816 (ROH1D)	-	-	0.99	-	0.86	-	-0.13	-	-	-	-1.55	-	0.58	-0.67	2.07	2.12	-0.66	-	-	-	2.0	0.65	-0.15	-	1.25	-0.13	-	1.75	-0.9	-
Spov3_chr2.00928 (KINbeta2)	0.64	0.46	0.71	0.61	1.36	-0.86	-1.99	-0.96	-0.23	-1.12	-0.84	-1.59	-0.72	-1.49	0.82	-1.2	-1.1	1.35	-1.62	-2.28	-1.52	-1.7	0.6	-1.44	-1.17	-0.91	-0.95	2.05	0.09	0.92
Spov3_chr2.01107	2.63	-	-	-	-	-15.11	1.56	-	-6.88	-	2.51	-	0.97	-	2.55	-	-	-	-	-	-	-	1.8	-2.88	1.91	-	-	-	-	-
Spov3_chr2.01369 (ALF5)	-	-	-	-	-	-	-	3.74	-	-	-	-	4.06	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr2.01684 (JMJ27)	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr2.01895	2.39	-	-	-	-	-	-	3.13	-	-	2.4	-	-	-	-	-	-	-	-	-	-	-	-	2.4	-	-	-	-	2.46	-
Spov3_chr2.02697	-	-	-	-	-	-	-	3.81	-	-	-	-	3.99	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr2.03850 (TOPII)	-	-	-	-	-	3.32	-	4.32	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr2.03882	1.64	-	-	-	1.35	-	-	2.86	1.64	-	-	-	-	-	-	-	-19.7	1.18	-	-	-	-	-	-	-	1.12	-	3.25	-	-
Spov3_chr2.04769	-	-	-	3.45	-	-	-	3.75	-	-	-	0.29	-	-	-	2.13	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr2.04779 (CRK18)	-	-	-	-	-	-	3.23	3.32	-	-	-	-	2.48	-	-	-	-	-	-	-	-	2.35	-	-	-	-	-	-	-	-
Spov3_chr2.04793 (GLT1)	1.13	0.98	-	-	2.01	-0.15	-0.05	2.68	1.62	-	-	1.98	-	1.53	-	0.15	-	-	-	-	-	0.45	-1.55	-	-	-	-0.34	-	-	-
Spov3_chr2.04807 (PEG9)	0.6	-	-1.43	-0.23	-0.32	-0.16	-2.64	0.69	0.47	-5.67	0.68	-0.81	-0.91	-2.61	-0.5	-0.19	0.37	1.35	0.94	0.42	0.3	0.44	0.6	-	-2.66	0.29	-	-1.2	1.43	1.16
Spov3_chr2.04835 (ZCW7)	-0.13	0.83	0.3	-2.54	1.33	-0.47	0.11	-0.22	-0.46	-0.8	0.12	1.2	0.28	0.31	-0.14	-0.25	0.19	0.64	-	-0.16	-0.18	-2.57	0.53	0.57	0.18	-0.44	-0.24	-0.04	-	-0.79
Spov3_chr3.00283	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr3.01310	-	-	-	-	-	2.86	-	4.51	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr3.01873 (ML1)	-0.07	0.53	-2.09	-1.15	-2.51	-0.08	-0.76	0.49	0.63	0.15	0.51	-0.7	0.16	0.07	-0.01	0.54	0.66	0.41	1.07	-2.36	0.17	-1.28	-	-2.05	-0.26	-2.18	-0.45	0.22	1.21	1.17
Spov3_chr3.02001	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr3.02400	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr3.03142	-	-	-	-	3.21	-	-	4.38	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr3.03337 (CRK33)	-3.62	-	-	-4.04	-	-	0.95	1.19	-7.73	-1.0	-0.57	1.39	1.68	-0.19	1.48	-	1.34	-0.03	1.74	-16.41	-0.03	-	-	1.74	-	0.48	-	-	-	1.26
Spov3_chr3.03366	0.53	-0.32	-	-	-1.74	-	0.05	1.05	-0.02	-1.49	0.18	0.79	0.56	-1.53	1.14	1.5	0.22	0.03	0.68	-1.47	-0.39	-0.42	-1.24	0.8	-0.6	-	0.21	1.19	-1.49	0.02
Spov3_chr4.00390 (DICE1)	-	-	-	-	-	-	-	4.5	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2.87	-	-	-
Spov3_chr4.00744 (RRT1)	-	-	-	-	-	-	-	4.26	-	-	-	-	-	-	-	-	-	-	-	-	3.32	-	-	-	-	-	-	-	-	-0.29
Spov3_chr4.01059 (LSM4)	-	-	-	-	-	-	-	3.86	-	-	-	-	-	-	-	-	-	-	-	2.95	-	-	-	-	-	-	-	1.12	2.46	-
Spov3_chr4.01298 (NOC2)	-	-	-	-	-	-	-	3.63	-	-	-	-	2.63	-	-	-	-	-	-	-	2.72	-	-	-	-	1.46	1.04	-	-	-
Spov3_chr4.01439	4.23	-	-	-	-	-	3.49	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr4.01807	-	-	-	-	-	-	-	4.34	-	-	-	-	-	-	-	-	-	3.28	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr4.01931 (CROLIN1)	0.07	0.12	-0.09	0.25	-0.09	-0.25	0.79	0.35	-0.5	0.13	-0.12	-0.3	-0.26	0.01	0.11	0.87	-0.7	0.02	-0.9	0.03	-1.14	0.4	-0.31	0.07	-0.54	-0.02	-0.31	0.45	0.16	-0.16
Spov3_chr4.03552 (SK2)	-0.18	-0.12	0.03	-0.06	0.2	0.01	-0.1	0.16	0.19	0.02	0.17	0.17	0.22	0.31	0.05	-0.17	-0.04	-0.42	0.1	-0.2	-0.04	-0.06	-0.29	-0.27	0.05	0.29	0.23	-0.52	-0.11	-0.03
Spov3_chr4.03965	-	-	-	-	-	-	-	3.37	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.3
Spov3_chr5.00886 (BRD13)	0.33	-	-	0.4	1.23	-	0.11	-	-	-	0.43	-	1.47	-	1.81	-	-	0.12	-	0.02	-	-	-	-	1.7	0.19	-	2.88	1.35	-
Spov3_chr5.01808 (LecRK-VII.1)	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr5.01988	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr5.02048 (VAMP714)	-	-	-	1.99	2.95	-	-	4.19	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr5.02111 (EFOP1)	0.21	-0.29	0.07	-0.07	-0.36	-0.03	-0.64	-0.37	0.82	0.99	0.08	-0.36	-0.23	-0.01	0.46	0.35	0.8	-1.9	0.46	0.51	0.01	-0.03	-1.77	-0.2	-0.79	0.05	-0.31	-0.29	-0.34	-0.36
Spov3_chr5.02120 (MOL1)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.8	-	-	-	-	-	-	-	-	-	4.01	-	-
Spov3_chr5.02220 (SIZ1)	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr5.03017 (ATPA)	-0.7	0.06	-0.0	0.32	1.01	0.09	0.33	0.52	-0.41	0.03	-0.91	-0.12	0.35	0.53	0.31	-0.19	0.22	-0.74	-0.67	-0.96	-0.32	-0.43	-0.66	0.9	-0.36	-0.3	0.71	-0.89	-0.06	-0.74
Spov3_chr5.03501	-	-	-	-	-	-	-	3.68	-	-	-	1.04	-	-	-	0.71	-	-	-	-	2.13	-	-	-	2.28	-	-	2.07	-	-
Spov3_chr5.03956 (NG1)	-1.91	-1.08	0.72	0.77	-1.23	-0.01	-2.61	-0.19	0.59	0.48	-2.03	0.08	-0.86	0.27	0.28	0.17	1.37	-1.04	1.13	0.46	0.17	-0.97	0.18	-0.85	-0.32	0.81	-0.07	-2.98	-0.39	-0.35
Spov3_chr5.04114 (PHYLLO)	-0.07	0.22	0.04	-0.08	-0.12	-0.52	0.7	-0.87	-0.01	-0.16	-0.6	-0.79	0.37	1.08	1.13	0.37	0.58	0.0	-0.52	-1.08	-2.19	-1.43	-1.61	0.43	-2.01	0.05	0.43	0.36	0.75	-0.76
Spov3_chr5.04429	3.12	-	-	-	-	-	-	4.41	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr6.00257 (BTI1)	-	-	-	-	-	-	-	3.81	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.09	-	-	-	-	2.91	-
Spov3_chr6.00507	-0.28	0.08	-0.65	-0.23	0.24	0.28	0.25	0.2	0.34	-0.25	0.1	0.24	0.75	0.24	-0.12	-0.06	-0.05	-0.05	0.28	-0.41	-0.07	-0.19	-0.34	-0.01	-0.86	0.27	0.07	-0.4	-0.34	-0.12
Spov3_chr6.00723	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr6.02080 (FAR1)	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr6.02519 (PBRP)	-	2.79	1.56	-	-	-	-	2.94	-	1.75	0.39	-	-	0.69	-	-	-	-	-	-	2.63	-	-	-	-	-	-	-	-	-
Spov3_chr6.02578 (CPK34)	-	-	-	-	-	-	-	4.91	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_chr6.02824 (GGL20)	0.76	-	2.58	1.78	0.62	-	-	2.16	0.57	-	0.81	-	2.76	-	-	-	-	-	-	1.54	-	-	-	-	-	-	-	-	-	-
Spov3_chr6.03003 (ERDL6)	-	-	-	-	-	-	-	-	3.4	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.28	-	-
Spov3_S06.00034 (BP)	0.03	-0.14	-0.43	-0.2	0.16	0.06	0.08	0.25	0.08	-0.14	-0.11	0.03	0.2	0.11	-0.04	-0.01	-0.21	0.12	-0.08	-0.11	0.0	0.28	0.01	0.02	-0.09	-0.05	-0.08	0.02	-0.11	0.13
Spov3_S07.00091 (CYP71A25)	-1.68	-0.49	-1.6	-0.33	0.56	1.06	-1.93	-0.13	1.22	0.71	1.05	-1.73	0.99	-1.71	1.03	-	-	-1.68	1.88	-0.6	-1.51	-1.54	-1.66	1.2	0.02	-1.52	-1.82	0.05	0.14	-0.56
Spov3_S08.00077 (DMS5)	-22.9	-20.05	-	-	-19.53	-21.08	-21.09	4.3	-	-	-	-	-17.52	-	-20.56	-	-	-	-	-	3.37	-21.44	-18.12	-18.32	-17.74	-17.51	-	-	-21.63	-21.09
Spov3_S13.00023	-	-	3.29	-	-	-	-	2.09	-	-	-	-	4.0	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Spov3_S14.00034 (TGH)	2.78	-	-	-	-	-	-	3.46	-	-	-	-	-	-	-	-	2.58	-	-	-	-	-	-	-	2.62	-	-	-	-	-

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.