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  5. Spov3_chr1.03251

Spov3_chr1.03251


Description : not classified


Gene families : OG0000129 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000129_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr1.03251
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_12

Target Alias Description ECC score Gene Family Method Actions
Spov3_C0002.00218 MED17 not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.04915 ATRGTA2, RGTA2 not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.05582 GS1, GPP2 component *(DDA) of CDDD substrate adaptor module of... 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.05621 ATRGTA2, RGTA2 not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.03976 ATRGTA2, RGTA2 not classified 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.02920 PP2CA, ATPP2CA, AHG3 not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006508 proteolysis IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008233 peptidase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008234 cysteine-type peptidase activity IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001932 PPM-type_phosphatase-like_dom 83 132
No external refs found!