Spov3_chr1.02514

Description : organellar phenylalanine-tRNA ligase

Gene families : OG0009556 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr1.02514
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_12

Target	Alias	Description	ECC score	Gene Family Method	Actions
Lsat_1_v5_gn_8_118000.1	No alias	organellar phenylalanine-tRNA ligase	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEA	Interproscan
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0001932	regulation of protein phosphorylation	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003854	3-beta-hydroxy-delta5-steroid dehydrogenase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003873	6-phosphofructo-2-kinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003924	GTPase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004332	fructose-bisphosphate aldolase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004427	inorganic diphosphate phosphatase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004455	ketol-acid reductoisomerase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005244	voltage-gated monoatomic ion channel activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005247	voltage-gated chloride channel activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005253	monoatomic anion channel activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005254	chloride channel activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005315	inorganic phosphate transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005509	calcium ion binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0005975	carbohydrate metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006000	fructose metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006413	translational initiation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006536	glutamate metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006537	glutamate biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006629	lipid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006694	steroid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006720	isoprenoid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006721	terpenoid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006817	phosphate ion transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006820	monoatomic anion transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006821	chloride transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0008202	steroid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0008299	isoprenoid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008308	voltage-gated monoatomic anion channel activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008443	phosphofructokinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008509	monoatomic anion transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0008610	lipid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008661	1-deoxy-D-xylulose-5-phosphate synthase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008942	nitrite reductase [NAD(P)H] activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009058	biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009081	branched-chain amino acid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009082	branched-chain amino acid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0009678	diphosphate hydrolysis-driven proton transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0010277	chlorophyllide a oxygenase [overall] activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0015108	chloride transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0015698	inorganic anion transport	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0015930	glutamate synthase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016053	organic acid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016114	terpenoid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016229	steroid dehydrogenase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016462	pyrophosphatase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016491	oxidoreductase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016661	oxidoreductase activity, acting on other nitrogenous compounds as donors	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016703	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016744	transketolase or transaldolase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016832	aldehyde-lyase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016853	isomerase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0017038	protein import	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019200	carbohydrate kinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0019220	regulation of phosphate metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019842	vitamin binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0019898	extrinsic component of membrane	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019900	kinase binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019901	protein kinase binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0022832	voltage-gated channel activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0022836	gated channel activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0022839	monoatomic ion gated channel activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0022853	active monoatomic ion transmembrane transporter activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0030170	pyridoxal phosphate binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0030246	carbohydrate binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0030247	polysaccharide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0031399	regulation of protein modification process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0033764	steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0042325	regulation of phosphorylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043549	regulation of kinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043650	dicarboxylic acid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0044255	cellular lipid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0044283	small molecule biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0045859	regulation of protein kinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0046422	violaxanthin de-epoxidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0046857	oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0050790	regulation of catalytic activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051338	regulation of transferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0051537	2 iron, 2 sulfur cluster binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051726	regulation of cell cycle	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0065009	regulation of molecular function	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0070279	vitamin B6 binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0071900	regulation of protein serine/threonine kinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0098809	nitrite reductase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901576	organic substance biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1904029	regulation of cyclin-dependent protein kinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:2001070	starch binding	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR005121	Fdx_antiC-bd	362	447
IPR002319	Phenylalanyl-tRNA_Synthase	115	349

External Links

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Spov3_chr1.02514

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation