Spov3_chr1.01386


Description : not classified


Gene families : OG0000274 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000274_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr1.01386
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_3

Target Alias Description ECC score Gene Family Method Actions
Spov3_C0033.00032 No alias not classified 0.11 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.00763 VPS3, MTV10 not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.03978 No alias not classified 0.1 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.02369 VPS3, MTV10 not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0005634 nucleus IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0007034 vacuolar transport IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0043227 membrane-bounded organelle IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0043231 intracellular membrane-bounded organelle IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140110 transcription regulator activity IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR041588 Integrase_H2C2 61 118
IPR001584 Integrase_cat-core 139 232
IPR006502 PDDEXK-like 541 610
No external refs found!