Aliases : SEC31A
Description : not classified
Gene families : OG0000005 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000005_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Spinacia oleracea (Sol) PCC: Spov3_chr1.01140 | |
Cluster | Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_36 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Spov3_C0007.00032 | No alias | not classified | 0.05 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_C0016.00037 | RPB5D | not classified | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_C0026.00025 | EXO70H5, ATEXO70H5 | not classified | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_C0051.00014 | RPB5D | not classified | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_C0068.00005 | GT2L, AtGT2L | not classified | 0.04 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_C0074.00003 | No alias | not classified | 0.04 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr1.01605 | EXO70H5, ATEXO70H5 | not classified | 0.04 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr1.01669 | GT2L, AtGT2L | not classified | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr1.01671 | No alias | not classified | 0.04 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr1.01700 | No alias | not classified | 0.04 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr1.02166 | RPB5D | not classified | 0.04 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr1.02192 | AtABCB4, MDR4,... | not classified | 0.05 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr1.02316 | RPB5D | not classified | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr1.02597 | No alias | not classified | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr2.02686 | RPB5D | not classified | 0.05 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr2.04158 | RPB5D | not classified | 0.04 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr2.04180 | RPB5D | not classified | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr2.04768 | No alias | not classified | 0.04 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr2.04924 | CUL4, ATCUL4 | not classified | 0.06 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr2.04954 | RPB5D | not classified | 0.04 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr2.05038 | RPB5D | not classified | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr2.05717 | MUS81, ATMUS81 | not classified | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr3.00381 | MUS81, ATMUS81 | not classified | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr3.01025 | No alias | not classified | 0.05 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr3.01067 | RPB5D | not classified | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr3.01868 | No alias | not classified | 0.04 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr3.02252 | PQT3 | not classified | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr3.02282 | ATWRNEXO, WEX,... | not classified | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr3.02790 | No alias | not classified | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr3.03007 | GGL20 | not classified | 0.04 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr4.00757 | No alias | not classified | 0.06 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr4.01149 | RPB5D | not classified | 0.06 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr4.01201 | GT2L, AtGT2L | not classified | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr4.01548 | No alias | not classified | 0.04 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr4.01609 | No alias | not classified | 0.05 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr5.02814 | No alias | not classified | 0.04 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr5.02925 | RPB5D | not classified | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr5.03084 | GGL20 | not classified | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr5.03537 | RPB5D | not classified | 0.06 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr5.03971 | RPB5D | not classified | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr5.04381 | OXS3, ATOXS3 | not classified | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr6.02138 | GT2L, AtGT2L | not classified | 0.04 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr6.02140 | RPB5D | not classified | 0.04 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr6.02758 | No alias | not classified | 0.06 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEP | Spinacia oleracea GO terms from Neighborhoods |
MF | GO:0005198 | structural molecule activity | IEP | Spinacia oleracea GO terms from Neighborhoods |
CC | GO:0005840 | ribosome | IEP | Spinacia oleracea GO terms from Neighborhoods |
BP | GO:0006412 | translation | IEP | Spinacia oleracea GO terms from Neighborhoods |
BP | GO:0006518 | peptide metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
MF | GO:0008134 | transcription factor binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
MF | GO:0008270 | zinc ion binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
MF | GO:0017025 | TBP-class protein binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
BP | GO:0043043 | peptide biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
MF | GO:0043169 | cation binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | Spinacia oleracea GO terms from Neighborhoods |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Spinacia oleracea GO terms from Neighborhoods |
BP | GO:0043603 | amide metabolic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
BP | GO:0043604 | amide biosynthetic process | IEP | Spinacia oleracea GO terms from Neighborhoods |
MF | GO:0046872 | metal ion binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
MF | GO:0046914 | transition metal ion binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
MF | GO:0140296 | general transcription initiation factor binding | IEP | Spinacia oleracea GO terms from Neighborhoods |
No InterPro domains available for this sequence
No external refs found! |