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  5. Spov3_chr1.01101

Spov3_chr1.01101


Description : not classified


Gene families : OG0000119 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000119_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr1.01101
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_66

Target Alias Description ECC score Gene Family Method Actions
Spov3_C0007.00034 BBX14 not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0008.00101 No alias not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0023.00018 BBX14 not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S08.00046 EMB1989, NRPB2, RPB2 not classified 0.1 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.02969 PUCHI not classified 0.1 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.03113 No alias not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.00031 BBX14 not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.03203 PAIPP2, PHD2 not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.03345 BBX14 not classified 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.03346 No alias not classified 0.1 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003839 gamma-glutamylcyclotransferase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006749 glutathione metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006751 glutathione catabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0007275 multicellular organism development IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0015936 coenzyme A metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016840 carbon-nitrogen lyase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016842 amidine-lyase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0032501 multicellular organismal process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 125 219
No external refs found!