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  5. Spov3_S10.00007

Spov3_S10.00007


Description : not classified


Gene families : OG0000020 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000020_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_S10.00007
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Spov3_C0002.00041 No alias not classified 0.11 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0002.00055 PYD2 not classified 0.12 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0008.00091 TMAC2, AFP4 not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0009.00067 TMAC2, AFP4 not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0010.00044 No alias not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0010.00045 No alias not classified 0.1 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0010.00046 No alias not classified 0.11 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0033.00004 No alias not classified 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S08.00045 No alias not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_S10.00008 No alias not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.00386 NPF2.3 not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.02485 LST8-2 not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.02486 No alias not classified 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.02666 ATING1, ING1 not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.03200 ATING1, ING1 not classified 0.11 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.03226 No alias not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.03289 SES1 not classified 0.1 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.03755 No alias not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.03939 TMAC2, AFP4 not classified 0.13 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.02520 TMAC2, AFP4 not classified 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.05583 PYD2 not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.00322 No alias not classified 0.11 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.02737 No alias not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr3.03292 No alias not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.00416 ATSMC4, SMC2,... not classified 0.1 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.01180 No alias not classified 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.01752 G7, CER4, FAR3 not classified 0.1 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.01947 ATCSLB3, ATCSLB03, CSLB03 not classified 0.12 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.02171 TMAC2, AFP4 not classified 0.1 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.02380 No alias not classified 0.12 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.02386 No alias not classified 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.03424 No alias not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.03760 No alias not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.03761 No alias not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.03762 No alias not classified 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.04288 No alias not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.04379 TMAC2, AFP4 not classified 0.14 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.01929 ATING1, ING1 not classified 0.1 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.02737 No alias not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.02847 LST8-2 not classified 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.02848 ATING1, ING1 not classified 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.02939 No alias not classified 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0001932 regulation of protein phosphorylation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0019220 regulation of phosphate metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0019900 kinase binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0019901 protein kinase binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0031399 regulation of protein modification process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0042325 regulation of phosphorylation IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0043549 regulation of kinase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0045859 regulation of protein kinase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0050790 regulation of catalytic activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051174 regulation of phosphorus metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051338 regulation of transferase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051726 regulation of cell cycle IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0065009 regulation of molecular function IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 80 97
IPR041577 RT_RNaseH_2 325 399
No external refs found!